Wall clock time and date at job start Fri Apr 10 2020 14:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36718 * 119.65022 * 2 1 4 4 C 1.39355 * 119.66077 * 179.97438 * 3 2 1 5 5 C 1.41353 * 120.08836 * 0.02562 * 4 3 2 6 6 C 1.39501 * 119.28365 * 359.97438 * 5 4 3 7 7 C 1.38030 * 119.52595 * 359.73358 * 6 5 4 8 8 F 1.35094 * 119.62639 * 180.28946 * 7 6 5 9 9 N 1.35664 * 119.03263 * 179.97438 * 5 4 3 10 10 C 1.29842 * 121.58669 * 0.03964 * 9 5 4 11 11 N 1.35862 * 123.35567 * 359.95743 * 10 9 5 12 12 C 1.46501 * 119.68128 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46710 * 269.97324 * 12 11 10 14 14 O 1.21299 * 120.00100 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00034 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00048 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99617 * 0.02562 * 16 15 13 18 18 C 1.38953 * 119.99621 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99401 * 180.02562 * 18 16 15 20 20 Si 1.86789 * 120.00347 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47525 * 89.99975 * 20 18 16 22 22 H 1.48503 * 109.47083 * 210.00194 * 20 18 16 23 23 H 1.48502 * 109.47202 * 329.99842 * 20 18 16 24 24 C 1.35339 * 120.63577 * 0.02562 * 11 10 9 25 25 O 1.21741 * 121.28550 * 179.97438 * 24 11 10 26 26 H 1.08999 * 109.47015 * 90.00150 * 1 2 3 27 27 H 1.09000 * 109.46646 * 209.99302 * 1 2 3 28 28 H 1.09000 * 109.47248 * 330.00020 * 1 2 3 29 29 H 1.07997 * 120.17672 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.24012 * 180.02562 * 6 5 4 31 31 H 1.07998 * 118.32187 * 179.97438 * 10 9 5 32 32 H 1.08996 * 109.47147 * 29.97354 * 12 11 10 33 33 H 1.09002 * 109.47452 * 149.97711 * 12 11 10 34 34 H 0.96994 * 120.00047 * 0.02562 * 15 13 12 35 35 H 0.97000 * 120.00117 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1834 1.1882 0.0000 4 6 3.5770 1.1884 0.0005 5 6 4.2858 -0.0345 0.0005 6 6 3.5753 -1.2350 0.0005 7 6 2.1953 -1.2088 0.0061 8 9 1.5053 -2.3701 0.0121 9 7 5.6422 -0.0093 0.0005 10 6 6.3016 1.1093 0.0013 11 7 5.7034 2.3291 0.0013 12 6 6.5268 3.5409 0.0017 13 6 6.8082 3.9565 1.4226 14 8 6.3650 3.3043 2.3444 15 7 7.5531 5.0522 1.6693 16 6 7.8096 5.4300 2.9620 17 1 7.4149 4.8493 3.7827 18 6 8.5781 6.5594 3.2163 19 7 8.8243 6.9212 4.4554 20 14 9.2612 7.5633 1.7969 21 1 8.2847 8.6170 1.4206 22 1 10.5393 8.1972 2.2089 23 1 9.5027 6.6737 0.6325 24 6 4.3542 2.4356 0.0010 25 8 3.8058 3.5225 0.0015 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8901 0.5137 28 1 -0.3634 0.8900 0.5138 29 1 1.6406 2.1218 0.0004 30 1 4.1013 -2.1783 0.0010 31 1 7.3808 1.0678 0.0017 32 1 7.4674 3.3411 -0.5116 33 1 5.9952 4.3416 -0.5126 34 1 7.9078 5.5735 0.9323 35 1 9.3610 7.7094 4.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182286567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:22 Heat of formation + Delta-G solvation = -59.006545 kcal Electronic energy + Delta-G solvation = -23959.574403 eV Core-core repulsion = 20065.488365 eV Total energy + Delta-G solvation = -3894.086038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.096 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.21196 -41.65482 -39.05941 -38.05880 -37.48344 -34.69993 -34.04383 -32.02833 -31.81854 -31.15444 -28.45562 -27.43983 -24.99895 -24.09223 -23.37589 -22.27647 -19.86851 -19.29079 -18.80801 -18.37896 -17.35221 -16.71154 -16.42969 -16.07632 -15.97015 -15.34335 -15.15122 -14.82600 -14.33978 -14.25518 -14.10411 -13.64540 -13.49041 -13.42969 -13.22161 -13.13839 -12.88638 -12.37126 -12.30336 -12.05722 -11.75688 -11.71910 -11.28529 -10.72093 -10.28280 -10.17971 -10.07864 -10.04262 -9.75718 -9.13484 -8.78738 -8.36612 -8.10225 -6.45557 -3.98572 0.33434 0.57214 2.11528 2.33275 2.58861 2.90839 2.97865 3.06959 3.42913 3.67774 3.78162 3.97529 4.06295 4.22207 4.36581 4.46505 4.51043 4.74477 4.92483 4.97369 5.15270 5.19533 5.28219 5.35736 5.38033 5.54471 5.59696 5.67902 5.78285 5.87196 5.99893 6.21395 6.48376 6.59654 7.37482 7.70201 7.78391 7.94295 8.38666 8.76828 9.22755 9.56159 10.66682 Molecular weight = 305.10amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.003175 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.338167 B = 8817.927812 C = 9029.618687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.147 4.147 3 C -0.010 4.010 4 C -0.202 4.202 5 C 0.186 3.814 6 C -0.150 4.150 7 C 0.144 3.856 8 F -0.131 7.131 9 N -0.536 5.536 10 C 0.407 3.593 11 N -0.521 5.521 12 C 0.078 3.922 13 C 0.428 3.572 14 O -0.568 6.568 15 N -0.574 5.574 16 C -0.310 4.310 17 H 0.121 0.879 18 C 0.045 3.955 19 N -0.872 5.872 20 Si 0.881 3.119 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.268 1.268 24 C 0.556 3.444 25 O -0.502 6.502 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.203 0.797 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.373 0.627 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -12.060 -14.595 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.149 4.149 3 C -0.029 4.029 4 C -0.208 4.208 5 C 0.076 3.924 6 C -0.170 4.170 7 C 0.123 3.877 8 F -0.110 7.110 9 N -0.258 5.258 10 C 0.120 3.880 11 N -0.241 5.241 12 C -0.048 4.048 13 C 0.212 3.788 14 O -0.451 6.451 15 N -0.212 5.212 16 C -0.438 4.438 17 H 0.138 0.862 18 C -0.159 4.159 19 N -0.511 5.511 20 Si 0.707 3.293 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.193 1.193 24 C 0.349 3.651 25 O -0.376 6.376 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.219 0.781 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.206 0.794 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.648 -12.486 -13.802 20.523 hybrid contribution 0.329 1.472 -0.781 1.698 sum -8.320 -11.014 -14.584 20.080 Atomic orbital electron populations 1.20716 0.89505 1.03611 1.02881 1.19598 0.97518 0.91287 1.06483 1.20485 0.91771 0.98109 0.92537 1.20586 0.95421 0.92598 1.12226 1.18436 0.89283 0.91498 0.93221 1.20626 0.91356 0.98631 1.06373 1.17510 0.89306 0.81118 0.99771 1.91500 1.79438 1.46607 1.93406 1.68687 1.06964 1.24600 1.25501 1.24801 0.99980 0.78732 0.84475 1.46160 1.07942 1.08403 1.61603 1.21801 0.96426 0.87560 0.99042 1.19729 0.85023 0.84418 0.89590 1.90628 1.54509 1.54884 1.45059 1.42104 1.46456 1.24144 1.08523 1.19432 1.30999 1.10559 0.82826 0.86169 1.25075 0.97098 0.96972 0.96759 1.69618 1.37658 1.25632 1.18209 0.86652 0.79862 0.81025 0.81749 1.19388 1.19953 1.19322 1.18193 0.81074 0.89557 0.76325 1.90871 1.69938 1.28653 1.48121 0.90771 0.91050 0.90677 0.83569 0.83105 0.78072 0.86724 0.86498 0.79378 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.81 36.01 0.35 -0.59 16 2 C -0.15 -1.68 5.86 -104.85 -0.61 -2.30 16 3 C -0.01 -0.13 9.24 -39.72 -0.37 -0.49 16 4 C -0.20 -3.09 5.89 -104.77 -0.62 -3.71 16 5 C 0.19 2.67 6.63 -84.52 -0.56 2.11 16 6 C -0.15 -1.85 10.01 -39.19 -0.39 -2.24 16 7 C 0.14 1.69 7.23 -39.34 -0.28 1.41 16 8 F -0.13 -1.47 16.41 2.25 0.04 -1.43 16 9 N -0.54 -7.48 10.38 -12.02 -0.12 -7.60 16 10 C 0.41 5.24 11.40 -90.17 -1.03 4.21 16 11 N -0.52 -7.93 2.09 -120.18 -0.25 -8.18 16 12 C 0.08 1.13 5.84 -5.19 -0.03 1.10 16 13 C 0.43 9.05 7.85 -10.99 -0.09 8.96 16 14 O -0.57 -14.76 16.01 5.54 0.09 -14.67 16 15 N -0.57 -12.75 5.09 -10.96 -0.06 -12.81 16 16 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 17 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 18 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 19 N -0.87 -24.66 13.96 55.50 0.77 -23.89 16 20 Si 0.88 18.28 27.74 -169.99 -4.71 13.57 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -4.88 6.52 56.52 0.37 -4.51 16 24 C 0.56 9.61 7.66 -12.48 -0.10 9.52 16 25 O -0.50 -9.93 16.32 5.15 0.08 -9.84 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.57 7.59 -51.93 -0.39 0.18 16 28 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 29 H 0.15 1.80 7.82 -52.49 -0.41 1.39 16 30 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.20 1.74 7.99 -52.49 -0.42 1.32 16 32 H 0.11 1.07 7.99 -51.93 -0.41 0.66 16 33 H 0.12 1.60 7.46 -51.93 -0.39 1.22 16 34 H 0.37 7.04 5.76 -40.82 -0.24 6.81 16 35 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -34.84 316.38 -6.45 -41.28 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -3.08 Total: 8.29 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -3.97 Total: 10.52 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.34 Total: -52.48 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.17 Total: -24.51 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.71 Total: 13.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.84 -6.45 -41.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182286567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.724 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds