Wall clock time and date at job start Fri Apr 10 2020 14:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46512 * 109.46981 * 336.92288 * 3 2 1 5 5 C 1.36117 * 119.99956 * 97.15662 * 4 3 2 6 6 H 1.07991 * 120.00127 * 170.92846 * 5 4 3 7 7 C 1.39588 * 120.00106 * 350.93220 * 5 4 3 8 8 N 1.31019 * 119.99959 * 326.69083 * 7 5 4 9 9 Si 1.86800 * 120.00475 * 146.69542 * 7 5 4 10 10 H 1.48501 * 109.47312 * 94.99125 * 9 7 5 11 11 H 1.48497 * 109.47228 * 214.99233 * 9 7 5 12 12 H 1.48499 * 109.46834 * 334.99362 * 9 7 5 13 13 C 1.34776 * 120.00090 * 277.15888 * 4 3 2 14 14 O 1.21497 * 120.00264 * 185.25173 * 13 4 3 15 15 C 1.48828 * 119.99549 * 5.24656 * 13 4 3 16 16 O 1.21437 * 120.00869 * 5.74973 * 15 13 4 17 17 N 1.34783 * 119.99708 * 185.74211 * 15 13 4 18 18 C 1.46508 * 120.00210 * 180.02562 * 17 15 13 19 19 C 1.50694 * 109.46948 * 180.02562 * 18 17 15 20 20 C 1.38248 * 119.97274 * 269.71931 * 19 18 17 21 21 C 1.38195 * 120.02716 * 179.72845 * 20 19 18 22 22 C 1.38461 * 119.97423 * 0.57388 * 21 20 19 23 23 F 1.35093 * 120.02724 * 179.68320 * 22 21 20 24 24 C 1.38468 * 119.94531 * 359.70248 * 22 21 20 25 25 C 1.38192 * 119.97327 * 359.97438 * 24 22 21 26 26 H 1.08995 * 109.47433 * 216.92377 * 3 2 1 27 27 H 1.08999 * 109.47011 * 96.91737 * 3 2 1 28 28 H 0.96999 * 120.00381 * 180.02562 * 8 7 5 29 29 H 0.97004 * 119.99942 * 0.02562 * 17 15 13 30 30 H 1.08992 * 109.46942 * 59.99957 * 18 17 15 31 31 H 1.09003 * 109.46508 * 300.00412 * 18 17 15 32 32 H 1.08005 * 119.98747 * 359.97438 * 20 19 18 33 33 H 1.07998 * 120.01676 * 180.26005 * 21 20 19 34 34 H 1.07992 * 120.01027 * 179.97438 * 24 22 21 35 35 H 1.08005 * 119.98587 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2699 0.5414 5 6 3.4627 -2.2735 -0.3023 6 1 3.9583 -3.1512 0.0854 7 6 3.1973 -2.1682 -1.6686 8 7 2.1215 -1.5442 -2.0808 9 14 4.3757 -2.9170 -2.9096 10 1 3.9043 -4.2746 -3.2833 11 1 4.4286 -2.0603 -4.1214 12 1 5.7312 -3.0112 -2.3105 13 6 3.1845 -1.4451 1.8749 14 8 3.6785 -2.4606 2.3231 15 6 2.6762 -0.3944 2.7983 16 8 2.0892 0.5717 2.3548 17 7 2.8672 -0.5153 4.1270 18 6 2.3663 0.5187 5.0362 19 6 2.7081 0.1474 6.4561 20 6 1.8233 -0.6058 7.2051 21 6 2.1381 -0.9517 8.5056 22 6 3.3349 -0.5335 9.0622 23 9 3.6409 -0.8656 10.3355 24 6 4.2178 0.2257 8.3129 25 6 3.9038 0.5647 7.0105 26 1 2.9711 0.8223 0.6173 27 1 2.9713 0.1246 -1.0202 28 1 1.9368 -1.4713 -3.0302 29 1 3.3363 -1.2868 4.4814 30 1 1.2845 0.6009 4.9321 31 1 2.8288 1.4744 4.7894 32 1 0.8874 -0.9274 6.7725 33 1 1.4486 -1.5436 9.0892 34 1 5.1514 0.5528 8.7461 35 1 4.5921 1.1572 6.4260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359185303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:15 Heat of formation + Delta-G solvation = -38.054910 kcal Electronic energy + Delta-G solvation = -23645.471747 eV Core-core repulsion = 19752.294239 eV Total energy + Delta-G solvation = -3893.177507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.096 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.14601 -40.06743 -39.30371 -37.57122 -35.95104 -34.68645 -34.31087 -32.08077 -31.42437 -31.04891 -27.57292 -26.73879 -25.37412 -23.33489 -22.71738 -21.48320 -19.79048 -18.12733 -17.96517 -17.36937 -16.68453 -16.40165 -16.06204 -15.82404 -15.61756 -15.19328 -14.85938 -14.45314 -14.35519 -13.92343 -13.86872 -13.69790 -13.27887 -13.06895 -12.76785 -12.47710 -12.33346 -12.02394 -11.79320 -11.63596 -11.43868 -11.28461 -11.26406 -10.65664 -10.59611 -10.47638 -10.13288 -9.39230 -9.38204 -8.99215 -8.87645 -8.35200 -8.31444 -6.84392 -4.08233 0.77197 0.95673 2.25791 3.00058 3.06194 3.13387 3.21178 3.50620 3.83245 3.97857 3.98198 4.04504 4.20475 4.43610 4.44498 4.62413 4.69274 4.88425 4.97705 4.99545 5.31235 5.42887 5.48375 5.62133 5.66015 5.76973 5.83511 5.93250 6.22123 6.25992 6.43657 6.58322 6.65815 7.18542 7.47078 7.74377 8.04999 8.44934 8.79864 8.84632 8.96484 9.54623 10.18615 Molecular weight = 305.10amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.003061 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.466658 B = 9144.887887 C = 9769.127709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.261 3.739 3 C 0.211 3.789 4 N -0.381 5.381 5 C -0.329 4.329 6 H 0.121 0.879 7 C 0.046 3.954 8 N -0.827 5.827 9 Si 0.921 3.079 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.261 1.261 13 C 0.400 3.600 14 O -0.578 6.578 15 C 0.510 3.490 16 O -0.538 6.538 17 N -0.711 5.711 18 C 0.162 3.838 19 C -0.114 4.114 20 C -0.070 4.070 21 C -0.156 4.156 22 C 0.101 3.899 23 F -0.141 7.141 24 C -0.156 4.156 25 C -0.069 4.069 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.281 0.719 29 H 0.411 0.589 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 5.568 14.391 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.057 4.057 3 C 0.084 3.916 4 N -0.099 5.099 5 C -0.456 4.456 6 H 0.139 0.861 7 C -0.165 4.165 8 N -0.462 5.462 9 Si 0.746 3.254 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.185 1.185 13 C 0.187 3.813 14 O -0.464 6.464 15 C 0.295 3.705 16 O -0.415 6.415 17 N -0.365 5.365 18 C 0.039 3.961 19 C -0.114 4.114 20 C -0.088 4.088 21 C -0.174 4.174 22 C 0.082 3.918 23 F -0.120 7.120 24 C -0.175 4.175 25 C -0.088 4.088 26 H 0.126 0.874 27 H 0.139 0.861 28 H 0.092 0.908 29 H 0.247 0.753 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.661 5.838 14.151 15.538 hybrid contribution 0.950 -0.781 -0.249 1.255 sum 3.612 5.057 13.902 15.228 Atomic orbital electron populations 1.80851 1.13558 1.09239 1.11907 1.28871 0.94961 0.91784 0.90101 1.19152 0.82281 0.87364 1.02759 1.43405 1.50326 1.12251 1.03914 1.19831 1.37078 1.01592 0.87143 0.86145 1.25493 0.95421 0.97108 0.98450 1.70000 1.19564 1.38872 1.17751 0.86012 0.81367 0.79038 0.79021 1.19996 1.20237 1.18531 1.19094 0.90780 0.88463 0.82962 1.90605 1.50169 1.30411 1.75248 1.20685 0.80063 0.86615 0.83156 1.90696 1.41778 1.32678 1.76357 1.45753 1.59317 1.25745 1.05678 1.20160 1.00286 0.91792 0.83891 1.20011 0.95280 0.99966 0.96173 1.21039 0.99577 0.95410 0.92788 1.21163 0.96525 1.02995 0.96753 1.17791 0.95375 0.99003 0.79651 1.91500 1.93249 1.90823 1.36388 1.21156 1.00376 1.00757 0.95191 1.21012 0.95844 0.97967 0.93981 0.87400 0.86124 0.90764 0.75310 0.90430 0.90261 0.84583 0.84559 0.84547 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.05 18.54 42.16 0.78 -11.27 16 2 C 0.26 6.22 12.32 -20.76 -0.26 5.97 16 3 C 0.21 4.53 4.76 -6.82 -0.03 4.49 16 4 N -0.38 -9.06 2.59 -118.70 -0.31 -9.37 16 5 C -0.33 -8.22 9.35 -15.15 -0.14 -8.36 16 6 H 0.12 3.14 7.35 -52.49 -0.39 2.75 16 7 C 0.05 1.07 4.63 -17.40 -0.08 0.99 16 8 N -0.83 -19.97 10.11 55.53 0.56 -19.41 16 9 Si 0.92 18.04 29.66 -169.99 -5.04 13.00 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 12 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 13 C 0.40 9.22 7.59 -11.88 -0.09 9.13 16 14 O -0.58 -14.43 16.07 5.37 0.09 -14.34 16 15 C 0.51 9.98 7.66 -11.87 -0.09 9.89 16 16 O -0.54 -11.05 12.04 5.42 0.07 -10.98 16 17 N -0.71 -10.93 5.54 -62.11 -0.34 -11.27 16 18 C 0.16 1.95 5.80 -5.19 -0.03 1.92 16 19 C -0.11 -1.15 5.25 -104.62 -0.55 -1.70 16 20 C -0.07 -0.67 9.70 -39.59 -0.38 -1.06 16 21 C -0.16 -1.45 10.03 -39.51 -0.40 -1.85 16 22 C 0.10 1.01 7.30 -39.41 -0.29 0.72 16 23 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 24 C -0.16 -1.40 10.03 -39.51 -0.40 -1.80 16 25 C -0.07 -0.63 9.70 -39.60 -0.38 -1.02 16 26 H 0.11 2.06 6.08 -51.93 -0.32 1.74 16 27 H 0.12 2.53 6.10 -51.93 -0.32 2.21 16 28 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 29 H 0.41 6.16 7.94 -40.82 -0.32 5.84 16 30 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -30.02 321.40 -5.44 -35.46 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.01 Total: 7.47 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: -3.12 Total: 17.33 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.69 Total: -51.32 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.15 Total: -25.32 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.04 Total: 13.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.02 -5.44 -35.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359185303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.593 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds