Wall clock time and date at job start Fri Apr 10 2020 14:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46512 * 109.46981 * 336.92288 * 3 2 1 5 5 C 1.36117 * 119.99956 * 97.15662 * 4 3 2 6 6 H 1.07991 * 120.00127 * 170.92846 * 5 4 3 7 7 C 1.39588 * 120.00106 * 350.93220 * 5 4 3 8 8 N 1.31019 * 119.99959 * 326.69083 * 7 5 4 9 9 Si 1.86800 * 120.00475 * 146.69542 * 7 5 4 10 10 H 1.48501 * 109.47312 * 94.99125 * 9 7 5 11 11 H 1.48497 * 109.47228 * 214.99233 * 9 7 5 12 12 H 1.48499 * 109.46834 * 334.99362 * 9 7 5 13 13 C 1.34776 * 120.00090 * 277.15888 * 4 3 2 14 14 O 1.21497 * 120.00264 * 185.25173 * 13 4 3 15 15 C 1.48828 * 119.99549 * 5.24656 * 13 4 3 16 16 O 1.21437 * 120.00869 * 5.74973 * 15 13 4 17 17 N 1.34783 * 119.99708 * 185.74211 * 15 13 4 18 18 C 1.46508 * 120.00210 * 180.02562 * 17 15 13 19 19 C 1.50694 * 109.46948 * 180.02562 * 18 17 15 20 20 C 1.38248 * 119.97274 * 269.71931 * 19 18 17 21 21 C 1.38195 * 120.02716 * 179.72845 * 20 19 18 22 22 C 1.38461 * 119.97423 * 0.57388 * 21 20 19 23 23 F 1.35093 * 120.02724 * 179.68320 * 22 21 20 24 24 C 1.38468 * 119.94531 * 359.70248 * 22 21 20 25 25 C 1.38192 * 119.97327 * 359.97438 * 24 22 21 26 26 H 1.08995 * 109.47433 * 216.92377 * 3 2 1 27 27 H 1.08999 * 109.47011 * 96.91737 * 3 2 1 28 28 H 0.96999 * 120.00381 * 180.02562 * 8 7 5 29 29 H 0.97004 * 119.99942 * 0.02562 * 17 15 13 30 30 H 1.08992 * 109.46942 * 59.99957 * 18 17 15 31 31 H 1.09003 * 109.46508 * 300.00412 * 18 17 15 32 32 H 1.08005 * 119.98747 * 359.97438 * 20 19 18 33 33 H 1.07998 * 120.01676 * 180.26005 * 21 20 19 34 34 H 1.07992 * 120.01027 * 179.97438 * 24 22 21 35 35 H 1.08005 * 119.98587 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2699 0.5414 5 6 3.4627 -2.2735 -0.3023 6 1 3.9583 -3.1512 0.0854 7 6 3.1973 -2.1682 -1.6686 8 7 2.1215 -1.5442 -2.0808 9 14 4.3757 -2.9170 -2.9096 10 1 3.9043 -4.2746 -3.2833 11 1 4.4286 -2.0603 -4.1214 12 1 5.7312 -3.0112 -2.3105 13 6 3.1845 -1.4451 1.8749 14 8 3.6785 -2.4606 2.3231 15 6 2.6762 -0.3944 2.7983 16 8 2.0892 0.5717 2.3548 17 7 2.8672 -0.5153 4.1270 18 6 2.3663 0.5187 5.0362 19 6 2.7081 0.1474 6.4561 20 6 1.8233 -0.6058 7.2051 21 6 2.1381 -0.9517 8.5056 22 6 3.3349 -0.5335 9.0622 23 9 3.6409 -0.8656 10.3355 24 6 4.2178 0.2257 8.3129 25 6 3.9038 0.5647 7.0105 26 1 2.9711 0.8223 0.6173 27 1 2.9713 0.1246 -1.0202 28 1 1.9368 -1.4713 -3.0302 29 1 3.3363 -1.2868 4.4814 30 1 1.2845 0.6009 4.9321 31 1 2.8288 1.4744 4.7894 32 1 0.8874 -0.9274 6.7725 33 1 1.4486 -1.5436 9.0892 34 1 5.1514 0.5528 8.7461 35 1 4.5921 1.1572 6.4260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359185303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:15 Heat of formation + Delta-G solvation = -56.623452 kcal Electronic energy + Delta-G solvation = -23646.276939 eV Core-core repulsion = 19752.294239 eV Total energy + Delta-G solvation = -3893.982700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.93231 -41.59330 -40.25752 -39.14943 -37.77592 -36.37440 -35.80890 -33.88274 -32.13400 -32.05857 -29.35694 -28.12618 -26.81810 -24.19499 -24.05062 -22.40323 -21.32859 -19.96631 -19.02835 -18.61399 -18.15805 -17.69972 -17.45886 -16.93087 -16.59905 -16.52685 -16.29644 -16.00159 -15.62754 -15.07703 -15.01191 -14.81182 -14.50460 -14.46275 -14.37265 -13.90386 -13.49806 -13.39160 -13.30818 -13.29038 -12.97656 -12.63174 -12.36251 -12.34640 -12.04807 -11.98502 -11.88653 -11.18933 -10.25412 -10.20435 -10.11011 -10.06826 -9.66209 -8.63197 -5.97579 -0.01495 0.25198 0.60265 1.44408 1.52275 1.62877 1.77397 2.05019 2.22665 2.35069 2.41180 2.64883 2.89129 3.24395 3.27368 3.56511 3.59693 3.73132 3.81013 3.95503 4.18446 4.29385 4.56465 4.61602 4.66745 4.74000 4.95279 4.96771 5.12605 5.19734 5.31110 5.37076 5.49257 5.69690 5.86451 6.15298 6.34569 6.84897 6.96631 7.03287 7.18220 7.73358 8.39986 Molecular weight = 305.10amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.003061 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.466658 B = 9144.887887 C = 9769.127709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.270 3.730 3 C 0.216 3.784 4 N -0.393 5.393 5 C -0.366 4.366 6 H 0.100 0.900 7 C 0.023 3.977 8 N -0.851 5.851 9 Si 0.990 3.010 10 H -0.279 1.279 11 H -0.263 1.263 12 H -0.261 1.261 13 C 0.390 3.610 14 O -0.604 6.604 15 C 0.516 3.484 16 O -0.549 6.549 17 N -0.692 5.692 18 C 0.164 3.836 19 C -0.121 4.121 20 C -0.075 4.075 21 C -0.159 4.159 22 C 0.089 3.911 23 F -0.147 7.147 24 C -0.156 4.156 25 C -0.067 4.067 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.288 0.712 29 H 0.414 0.586 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 6.280 14.760 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.047 4.047 3 C 0.090 3.910 4 N -0.110 5.110 5 C -0.493 4.493 6 H 0.118 0.882 7 C -0.186 4.186 8 N -0.485 5.485 9 Si 0.811 3.189 10 H -0.205 1.205 11 H -0.188 1.188 12 H -0.185 1.185 13 C 0.178 3.822 14 O -0.492 6.492 15 C 0.299 3.701 16 O -0.428 6.428 17 N -0.345 5.345 18 C 0.042 3.958 19 C -0.122 4.122 20 C -0.093 4.093 21 C -0.177 4.177 22 C 0.069 3.931 23 F -0.126 7.126 24 C -0.174 4.174 25 C -0.086 4.086 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.099 0.901 29 H 0.250 0.750 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.525 6.565 14.549 16.346 hybrid contribution 0.661 -1.022 -0.234 1.239 sum 4.186 5.543 14.315 15.912 Atomic orbital electron populations 1.80838 1.14539 1.10298 1.13094 1.29348 0.95469 0.90817 0.89104 1.19336 0.80844 0.87242 1.03533 1.43557 1.50445 1.12700 1.04274 1.19802 1.39014 1.02145 0.88330 0.88222 1.26212 0.96050 0.97169 0.99171 1.70028 1.20356 1.39609 1.18501 0.85018 0.78984 0.78009 0.76870 1.20458 1.18756 1.18495 1.19799 0.89936 0.89087 0.83388 1.90571 1.51034 1.31777 1.75862 1.20041 0.80236 0.85714 0.84113 1.90687 1.42554 1.32750 1.76834 1.45742 1.57869 1.26306 1.04588 1.20316 1.00154 0.91160 0.84208 1.19886 0.96146 1.00999 0.95133 1.21164 0.99875 0.95293 0.92970 1.21332 0.96696 1.02957 0.96751 1.18036 0.95942 0.99493 0.79605 1.91486 1.93322 1.90946 1.36822 1.21382 1.00900 1.00114 0.95023 1.21205 0.95579 0.97649 0.94142 0.84852 0.85648 0.90125 0.74973 0.90622 0.89003 0.83927 0.83171 0.82666 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.65 18.54 20.01 0.37 -25.28 16 2 C 0.27 12.80 12.32 89.44 1.10 13.90 16 3 C 0.22 9.17 4.76 84.57 0.40 9.58 16 4 N -0.39 -18.73 2.59 -647.77 -1.67 -20.41 16 5 C -0.37 -18.49 9.35 84.35 0.79 -17.70 16 6 H 0.10 5.35 7.35 -2.92 -0.02 5.33 16 7 C 0.02 1.07 4.63 85.14 0.39 1.46 16 8 N -0.85 -40.65 10.11 21.77 0.22 -40.43 16 9 Si 0.99 36.51 29.66 68.60 2.03 38.55 16 10 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 11 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 12 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 13 C 0.39 18.05 7.59 87.08 0.66 18.71 16 14 O -0.60 -30.56 16.07 -3.70 -0.06 -30.62 16 15 C 0.52 19.75 7.66 87.08 0.67 20.42 16 16 O -0.55 -21.93 12.04 -3.52 -0.04 -21.97 16 17 N -0.69 -20.39 5.54 -468.74 -2.60 -22.99 16 18 C 0.16 3.64 5.80 85.63 0.50 4.14 16 19 C -0.12 -2.23 5.25 -19.86 -0.10 -2.33 16 20 C -0.07 -1.32 9.70 22.26 0.22 -1.11 16 21 C -0.16 -2.72 10.03 22.31 0.22 -2.49 16 22 C 0.09 1.62 7.30 22.38 0.16 1.78 16 23 F -0.15 -2.94 17.27 44.97 0.78 -2.16 16 24 C -0.16 -2.45 10.03 22.31 0.22 -2.23 16 25 C -0.07 -1.07 9.70 22.26 0.22 -0.85 16 26 H 0.13 4.93 6.08 -2.39 -0.01 4.92 16 27 H 0.13 5.18 6.10 -2.39 -0.01 5.17 16 28 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 29 H 0.41 11.94 7.94 -92.71 -0.74 11.21 16 30 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 31 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16 32 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -63.76 321.40 4.91 -58.85 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.43 Total: 23.16 kcal Atomic # 6 Polarization: 37.84 SS G_CDS: 5.45 Total: 43.29 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -3.68 Total: -109.10 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.10 Total: -52.59 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.55 kcal Total: -63.76 4.91 -58.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359185303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.227 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds