Wall clock time and date at job start Fri Apr 10 2020 14:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99579 * 2 1 4 4 H 1.48495 * 109.46920 * 269.99926 * 3 2 1 5 5 H 1.48506 * 109.47157 * 29.99589 * 3 2 1 6 6 H 1.48494 * 109.47261 * 149.99786 * 3 2 1 7 7 C 1.38810 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99808 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00341 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47088 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47552 * 304.99835 * 11 10 9 13 13 O 1.42898 * 109.47379 * 65.00085 * 11 10 9 14 14 C 1.53002 * 109.46969 * 184.99743 * 11 10 9 15 15 N 1.46506 * 109.47035 * 179.97438 * 14 11 10 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 11 17 17 O 1.21690 * 120.00222 * 0.02562 * 16 15 14 18 18 C 1.46716 * 119.99984 * 180.02562 * 16 15 14 19 19 O 1.35347 * 126.64402 * 359.68901 * 18 16 15 20 20 C 1.33662 * 107.68395 * 179.87470 * 19 18 16 21 21 N 1.30625 * 109.15702 * 0.39575 * 20 19 18 22 22 C 1.33691 * 108.99183 * 359.75509 * 21 20 19 23 23 C 1.50700 * 126.27552 * 179.97438 * 22 21 20 24 24 F 1.39897 * 109.47339 * 120.02394 * 23 22 21 25 25 F 1.39899 * 109.47168 * 240.02679 * 23 22 21 26 26 H 0.96992 * 120.00449 * 0.02562 * 1 2 3 27 27 H 0.97005 * 120.00170 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46951 * 59.99789 * 10 9 7 29 29 H 1.09003 * 109.46470 * 299.99580 * 10 9 7 30 30 H 0.96698 * 114.00171 * 59.99966 * 13 11 10 31 31 H 1.09004 * 109.46930 * 59.99996 * 14 11 10 32 32 H 1.09000 * 109.47312 * 299.99939 * 14 11 10 33 33 H 0.96999 * 120.00080 * 0.02562 * 15 14 11 34 34 H 1.07996 * 125.42642 * 180.15186 * 20 19 18 35 35 H 1.09004 * 109.46563 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2019 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0005 11 6 1.0642 -4.8196 0.0012 12 1 0.3804 -4.7127 0.8433 13 8 0.3215 -4.8121 -1.2196 14 6 1.8252 -6.1410 0.1268 15 7 0.8732 -7.2546 0.1281 16 6 1.3193 -8.5224 0.2295 17 8 2.5127 -8.7421 0.3204 18 6 0.3660 -9.6376 0.2301 19 8 -0.9817 -9.5484 0.1423 20 6 -1.4739 -10.7906 0.1754 21 7 -0.4876 -11.6396 0.2882 22 6 0.6656 -10.9643 0.3253 23 6 2.0442 -11.5602 0.4499 24 9 2.8086 -11.2048 -0.6666 25 9 2.6588 -11.0753 1.6094 26 1 -0.4850 0.8399 -0.0004 27 1 0.3558 -2.3881 0.0005 28 1 2.6851 -3.7144 0.8905 29 1 2.6850 -3.7143 -0.8895 30 1 0.8671 -4.9036 -2.0126 31 1 2.3919 -6.1468 1.0580 32 1 2.5090 -6.2481 -0.7152 33 1 -0.0780 -7.0795 0.0552 34 1 -2.5206 -11.0509 0.1217 35 1 1.9668 -12.6460 0.5066 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699067468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:09 Heat of formation + Delta-G solvation = -143.460950 kcal Electronic energy + Delta-G solvation = -24523.148752 eV Core-core repulsion = 20194.631271 eV Total energy + Delta-G solvation = -4328.517481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.102 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.16708 -47.17210 -44.07751 -39.89580 -37.74915 -35.88669 -34.55397 -34.08031 -31.81097 -31.30137 -29.34570 -27.46593 -25.59647 -24.16977 -22.92478 -22.14755 -21.56459 -20.89950 -19.04264 -17.84381 -17.80631 -17.52542 -17.20250 -17.02835 -16.60675 -16.11167 -16.03137 -15.50866 -14.79866 -14.65224 -14.49790 -14.09577 -14.02355 -13.72847 -13.50271 -13.05741 -13.04483 -12.80693 -12.42040 -12.17448 -11.95074 -11.79898 -11.46116 -11.00828 -10.84526 -10.77736 -10.64649 -10.21202 -9.86947 -9.82112 -9.61143 -9.35066 -8.94330 -6.98457 -5.79816 -3.09872 0.15613 1.70417 1.80096 2.63222 2.75444 2.88605 3.41652 3.46767 3.48504 3.69660 3.86879 4.08268 4.48533 4.53661 4.64585 4.70212 4.76684 4.78252 4.91505 5.11926 5.33365 5.50456 5.52696 5.63774 5.84624 6.01871 6.17432 6.44949 6.59864 6.74530 7.10691 7.64914 7.68676 7.85491 8.38101 9.49929 10.05530 10.41105 11.42509 Molecular weight = 305.10amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.002575 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.551102 B =10872.488418 C =11485.835776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.089 3.911 12 H 0.107 0.893 13 O -0.553 6.553 14 C 0.088 3.912 15 N -0.702 5.702 16 C 0.594 3.406 17 O -0.493 6.493 18 C -0.044 4.044 19 O -0.179 6.179 20 C 0.210 3.790 21 N -0.472 5.472 22 C -0.020 4.020 23 C 0.362 3.638 24 F -0.182 7.182 25 F -0.182 7.182 26 H 0.256 0.744 27 H 0.388 0.612 28 H 0.030 0.970 29 H 0.025 0.975 30 H 0.374 0.626 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.265 0.735 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -25.814 0.112 25.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.029 3.971 12 H 0.125 0.875 13 O -0.358 6.358 14 C -0.036 4.036 15 N -0.353 5.353 16 C 0.376 3.624 17 O -0.369 6.369 18 C -0.102 4.102 19 O -0.064 6.064 20 C -0.016 4.016 21 N -0.200 5.200 22 C -0.144 4.144 23 C 0.307 3.693 24 F -0.163 7.163 25 F -0.163 7.163 26 H 0.066 0.934 27 H 0.223 0.777 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.221 0.779 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.247 0.753 34 H 0.281 0.719 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.198 -26.317 0.631 26.417 hybrid contribution 0.037 1.672 -0.426 1.726 sum -2.161 -24.645 0.205 24.740 Atomic orbital electron populations 1.69671 1.05129 1.25747 1.57272 1.24766 0.95539 0.97768 1.02744 0.86172 0.78648 0.83689 0.77555 1.21653 1.21710 1.20709 1.19214 0.91022 0.84052 1.43294 0.91158 1.42232 1.06067 0.99380 1.89407 1.21194 0.93423 0.86474 0.99027 1.22422 0.94693 0.91598 0.88419 0.87543 1.86585 1.37536 1.96211 1.15422 1.22284 0.92004 0.85363 1.03938 1.45797 1.11995 1.04876 1.72671 1.16358 0.86114 0.81271 0.78613 1.90996 1.13375 1.83421 1.49074 1.23280 0.81041 0.97052 1.08835 1.84590 1.19719 1.34277 1.67803 1.28448 1.01063 0.75364 0.96712 1.70173 0.97311 1.34388 1.18093 1.22429 0.96389 0.89981 1.05630 1.19195 0.79858 0.97637 0.72622 1.93072 1.76542 1.94065 1.52600 1.93075 1.83665 1.90607 1.48922 0.93436 0.77717 0.95224 0.95769 0.77859 0.89635 0.90280 0.75307 0.71921 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.05 5.55 -59.91 -0.33 -18.39 16 10 C 0.13 2.39 5.90 -4.04 -0.02 2.36 16 11 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 12 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 13 O -0.55 -8.29 13.03 -35.23 -0.46 -8.75 16 14 C 0.09 1.08 5.34 -4.04 -0.02 1.06 16 15 N -0.70 -8.08 5.44 -61.60 -0.34 -8.42 16 16 C 0.59 7.68 7.79 -12.84 -0.10 7.58 16 17 O -0.49 -7.74 13.93 5.20 0.07 -7.67 16 18 C -0.04 -0.50 7.18 -36.84 -0.26 -0.76 16 19 O -0.18 -1.53 10.57 4.42 0.05 -1.48 16 20 C 0.21 1.26 13.21 52.25 0.69 1.95 16 21 N -0.47 -4.23 11.26 -10.88 -0.12 -4.35 16 22 C -0.02 -0.21 6.60 -82.46 -0.54 -0.76 16 23 C 0.36 3.77 5.10 36.01 0.18 3.96 16 24 F -0.18 -2.28 16.20 2.25 0.04 -2.24 16 25 F -0.18 -2.28 16.20 2.25 0.04 -2.25 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.39 10.34 7.67 -40.82 -0.31 10.02 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.37 4.61 9.05 45.56 0.41 5.02 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.41 4.25 8.14 -40.82 -0.33 3.92 16 34 H 0.27 0.05 8.06 -52.49 -0.42 -0.37 16 35 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -35.54 323.69 -3.63 -39.17 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -2.74 Total: 10.41 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.41 Total: 9.21 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.07 Total: -58.54 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.34 Total: -17.90 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.07 Total: -4.49 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.54 -3.63 -39.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699067468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.295 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds