Wall clock time and date at job start Fri Apr 10 2020 14:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99579 * 2 1 4 4 H 1.48495 * 109.46920 * 269.99926 * 3 2 1 5 5 H 1.48506 * 109.47157 * 29.99589 * 3 2 1 6 6 H 1.48494 * 109.47261 * 149.99786 * 3 2 1 7 7 C 1.38810 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99808 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00341 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47088 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47552 * 304.99835 * 11 10 9 13 13 O 1.42898 * 109.47379 * 65.00085 * 11 10 9 14 14 C 1.53002 * 109.46969 * 184.99743 * 11 10 9 15 15 N 1.46506 * 109.47035 * 179.97438 * 14 11 10 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 11 17 17 O 1.21690 * 120.00222 * 0.02562 * 16 15 14 18 18 C 1.46716 * 119.99984 * 180.02562 * 16 15 14 19 19 O 1.35347 * 126.64402 * 359.68901 * 18 16 15 20 20 C 1.33662 * 107.68395 * 179.87470 * 19 18 16 21 21 N 1.30625 * 109.15702 * 0.39575 * 20 19 18 22 22 C 1.33691 * 108.99183 * 359.75509 * 21 20 19 23 23 C 1.50700 * 126.27552 * 179.97438 * 22 21 20 24 24 F 1.39897 * 109.47339 * 120.02394 * 23 22 21 25 25 F 1.39899 * 109.47168 * 240.02679 * 23 22 21 26 26 H 0.96992 * 120.00449 * 0.02562 * 1 2 3 27 27 H 0.97005 * 120.00170 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46951 * 59.99789 * 10 9 7 29 29 H 1.09003 * 109.46470 * 299.99580 * 10 9 7 30 30 H 0.96698 * 114.00171 * 59.99966 * 13 11 10 31 31 H 1.09004 * 109.46930 * 59.99996 * 14 11 10 32 32 H 1.09000 * 109.47312 * 299.99939 * 14 11 10 33 33 H 0.96999 * 120.00080 * 0.02562 * 15 14 11 34 34 H 1.07996 * 125.42642 * 180.15186 * 20 19 18 35 35 H 1.09004 * 109.46563 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2019 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0005 11 6 1.0642 -4.8196 0.0012 12 1 0.3804 -4.7127 0.8433 13 8 0.3215 -4.8121 -1.2196 14 6 1.8252 -6.1410 0.1268 15 7 0.8732 -7.2546 0.1281 16 6 1.3193 -8.5224 0.2295 17 8 2.5127 -8.7421 0.3204 18 6 0.3660 -9.6376 0.2301 19 8 -0.9817 -9.5484 0.1423 20 6 -1.4739 -10.7906 0.1754 21 7 -0.4876 -11.6396 0.2882 22 6 0.6656 -10.9643 0.3253 23 6 2.0442 -11.5602 0.4499 24 9 2.8086 -11.2048 -0.6666 25 9 2.6588 -11.0753 1.6094 26 1 -0.4850 0.8399 -0.0004 27 1 0.3558 -2.3881 0.0005 28 1 2.6851 -3.7144 0.8905 29 1 2.6850 -3.7143 -0.8895 30 1 0.8671 -4.9036 -2.0126 31 1 2.3919 -6.1468 1.0580 32 1 2.5090 -6.2481 -0.7152 33 1 -0.0780 -7.0795 0.0552 34 1 -2.5206 -11.0509 0.1217 35 1 1.9668 -12.6460 0.5066 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699067468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:08 Heat of formation + Delta-G solvation = -176.083340 kcal Electronic energy + Delta-G solvation = -24524.563365 eV Core-core repulsion = 20194.631271 eV Total energy + Delta-G solvation = -4329.932094 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.03199 -48.05977 -44.73370 -40.90448 -38.99883 -36.60099 -36.09223 -35.40270 -33.24337 -32.47853 -30.70485 -28.42426 -27.02220 -25.14978 -24.27928 -23.10069 -22.81356 -21.84639 -19.91025 -19.21055 -18.60616 -18.58622 -18.30381 -17.82351 -17.81984 -17.20150 -16.86923 -16.51061 -16.39335 -15.86226 -15.61772 -15.22767 -15.09268 -14.93158 -14.76501 -14.40795 -14.24378 -13.91073 -13.88789 -13.31330 -12.97114 -12.84330 -12.75867 -12.54001 -12.22040 -12.16544 -12.00678 -11.82959 -11.67600 -11.02518 -10.95963 -10.62792 -10.26526 -9.02028 -7.95676 -5.25188 -0.59729 1.09553 1.10688 1.47863 1.49353 1.57838 1.70166 1.86254 2.24837 2.55453 3.08611 3.11963 3.32678 3.38487 3.47517 3.54289 3.87794 3.88504 3.97563 4.02975 4.17585 4.21906 4.37159 4.57586 4.65365 4.88879 4.93166 5.04609 5.19284 5.47961 6.02509 6.25311 6.26433 6.72624 6.80242 7.32851 8.07750 8.30587 9.27565 Molecular weight = 305.10amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.002575 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.551102 B =10872.488418 C =11485.835776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.108 3.892 12 H 0.102 0.898 13 O -0.563 6.563 14 C 0.100 3.900 15 N -0.694 5.694 16 C 0.594 3.406 17 O -0.529 6.529 18 C -0.074 4.074 19 O -0.180 6.180 20 C 0.241 3.759 21 N -0.495 5.495 22 C -0.020 4.020 23 C 0.351 3.649 24 F -0.197 7.197 25 F -0.198 7.198 26 H 0.252 0.748 27 H 0.377 0.623 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.386 0.614 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.418 0.582 34 H 0.321 0.679 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -27.052 -0.028 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.384 5.384 10 C -0.005 4.005 11 C 0.048 3.952 12 H 0.120 0.880 13 O -0.370 6.370 14 C -0.024 4.024 15 N -0.345 5.345 16 C 0.378 3.622 17 O -0.407 6.407 18 C -0.131 4.131 19 O -0.065 6.065 20 C 0.017 3.983 21 N -0.222 5.222 22 C -0.144 4.144 23 C 0.297 3.703 24 F -0.178 7.178 25 F -0.179 7.179 26 H 0.060 0.940 27 H 0.209 0.791 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.235 0.765 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.255 0.745 34 H 0.335 0.665 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.702 -27.593 0.483 27.729 hybrid contribution 0.123 1.920 -0.400 1.965 sum -2.579 -25.673 0.083 25.802 Atomic orbital electron populations 1.69825 1.06641 1.26126 1.59248 1.25592 0.96401 1.01190 1.03579 0.85132 0.77708 0.79406 0.77450 1.21380 1.22186 1.19384 1.19641 0.91543 0.85314 1.41507 0.90523 1.42421 1.05756 1.00778 1.89409 1.21408 0.94162 0.85566 0.99368 1.22099 0.93599 0.91150 0.88331 0.88030 1.86562 1.38189 1.96194 1.16039 1.22040 0.91722 0.84406 1.04204 1.45664 1.12153 1.04413 1.72268 1.16521 0.86080 0.81751 0.77830 1.90969 1.14913 1.84044 1.50807 1.22854 0.81997 0.96527 1.11772 1.84599 1.18426 1.35483 1.68031 1.29817 1.02460 0.73901 0.92138 1.70225 0.97189 1.34897 1.19868 1.22563 0.97048 0.90086 1.04711 1.19743 0.79495 0.99547 0.71501 1.93032 1.77040 1.94363 1.53414 1.93034 1.84022 1.91011 1.49805 0.93970 0.79120 0.94625 0.94873 0.76470 0.89607 0.89813 0.74512 0.66507 0.81286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.97 45.87 29.55 68.60 2.03 47.89 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.25 -13.73 9.99 84.03 0.84 -12.89 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -36.78 5.55 -343.45 -1.91 -38.68 16 10 C 0.12 4.48 5.90 86.38 0.51 4.99 16 11 C 0.11 3.06 3.09 30.59 0.09 3.16 16 12 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 13 O -0.56 -16.34 13.03 -148.98 -1.94 -18.28 16 14 C 0.10 2.38 5.34 86.38 0.46 2.84 16 15 N -0.69 -15.42 5.44 -467.02 -2.54 -17.96 16 16 C 0.59 15.17 7.79 86.46 0.67 15.84 16 17 O -0.53 -16.77 13.93 -4.32 -0.06 -16.83 16 18 C -0.07 -1.58 7.18 24.05 0.17 -1.41 16 19 O -0.18 -2.66 10.57 -7.09 -0.07 -2.74 16 20 C 0.24 2.07 13.21 130.42 1.72 3.79 16 21 N -0.49 -7.63 11.26 -303.12 -3.41 -11.05 16 22 C -0.02 -0.40 6.60 41.83 0.28 -0.12 16 23 C 0.35 7.11 5.10 71.24 0.36 7.47 16 24 F -0.20 -4.96 16.20 44.97 0.73 -4.23 16 25 F -0.20 -4.99 16.20 44.97 0.73 -4.26 16 26 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.38 20.25 7.67 -92.70 -0.71 19.54 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.39 9.04 9.05 -74.06 -0.67 8.37 16 31 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.42 8.17 8.14 -92.71 -0.75 7.42 16 34 H 0.32 -1.59 8.06 -2.91 -0.02 -1.61 16 35 H 0.17 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -77.58 323.69 -1.54 -79.12 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.95 Total: 26.13 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 5.58 Total: 19.83 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -7.58 Total: -126.64 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -2.08 Total: -37.85 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 1.46 Total: -8.49 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -77.58 -1.54 -79.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699067468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.963 kcal (2) G-P(sol) polarization free energy of solvation -77.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds