Wall clock time and date at job start Fri Apr 10 2020 14:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00312 * 2 1 4 4 O 1.20830 * 119.99889 * 4.39787 * 3 2 1 5 5 C 1.50700 * 120.00319 * 184.11569 * 3 2 1 6 6 N 1.46496 * 112.84690 * 36.55018 * 5 3 2 7 7 S 1.65609 * 119.99922 * 57.79588 * 6 5 3 8 8 O 1.42096 * 104.27926 * 182.45975 * 7 6 5 9 9 O 1.42094 * 104.27629 * 310.32017 * 7 6 5 10 10 C 1.81404 * 104.44757 * 66.38854 * 7 6 5 11 11 C 1.52994 * 109.47224 * 172.73237 * 10 7 6 12 12 C 1.52995 * 109.47355 * 184.58444 * 11 10 7 13 13 C 1.50703 * 109.47218 * 184.56861 * 12 11 10 14 14 H 1.07997 * 120.00004 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99919 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99795 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46980 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47051 * 120.00058 * 17 15 13 20 20 H 1.48498 * 109.47477 * 240.00190 * 17 15 13 21 21 C 1.53781 * 113.61542 * 265.36180 * 5 3 2 22 22 C 1.53955 * 87.01914 * 220.04710 * 21 5 3 23 23 C 1.53779 * 113.61612 * 167.74996 * 5 3 2 24 24 H 1.08995 * 109.47961 * 184.16945 * 1 2 3 25 25 H 1.09008 * 109.47008 * 304.17058 * 1 2 3 26 26 H 1.09004 * 109.47235 * 64.16396 * 1 2 3 27 27 H 0.96994 * 120.00480 * 237.79344 * 6 5 3 28 28 H 1.09001 * 109.46905 * 292.73411 * 10 7 6 29 29 H 1.08996 * 109.46946 * 52.73160 * 10 7 6 30 30 H 1.09000 * 109.46998 * 304.58679 * 11 10 7 31 31 H 1.08999 * 109.46907 * 64.58427 * 11 10 7 32 32 H 1.09007 * 109.47147 * 304.56549 * 12 11 10 33 33 H 1.08998 * 109.47203 * 64.56458 * 12 11 10 34 34 H 0.97002 * 119.99733 * 179.97438 * 16 15 13 35 35 H 1.09008 * 113.61296 * 334.56191 * 21 5 3 36 36 H 1.08997 * 113.61670 * 105.46397 * 21 5 3 37 37 H 1.09006 * 113.53443 * 270.81433 * 22 21 5 38 38 H 1.08997 * 113.74653 * 139.94218 * 22 21 5 39 39 H 1.08996 * 113.61181 * 254.52809 * 23 5 3 40 40 H 1.08998 * 113.61063 * 25.34777 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4061 2.2079 0.0802 5 6 3.5634 1.2763 -0.0937 6 7 4.1344 0.2505 -0.9698 7 16 3.6566 0.1540 -2.5526 8 8 4.3606 -0.9698 -3.0632 9 8 2.2370 0.1633 -2.4913 10 6 4.2713 1.6858 -3.3051 11 6 4.0496 1.6355 -4.8181 12 6 4.6699 2.8749 -5.4659 13 6 4.3551 2.8823 -6.9397 14 1 3.7706 2.0831 -7.3710 15 6 4.8123 3.9099 -7.7372 16 7 5.5236 4.8834 -7.2118 17 14 4.4226 3.9187 -9.5641 18 1 3.6141 2.7202 -9.9035 19 1 3.6550 5.1445 -9.9006 20 1 5.6884 3.8985 -10.3404 21 6 4.2613 1.3772 1.2729 22 6 5.2160 2.3934 0.6203 23 6 4.0877 2.6932 -0.3807 24 1 -0.3635 -1.0248 0.0747 25 1 -0.3633 0.5772 0.8503 26 1 -0.3634 0.4479 -0.9250 27 1 4.7922 -0.3722 -0.6230 28 1 3.7338 2.5370 -2.8872 29 1 5.3361 1.7909 -3.0972 30 1 4.5191 0.7396 -5.2244 31 1 2.9803 1.6125 -5.0280 32 1 4.2588 3.7717 -5.0021 33 1 5.7506 2.8561 -5.3254 34 1 5.8456 5.6061 -7.7730 35 1 3.6332 1.8070 2.0533 36 1 4.7504 0.4536 1.5826 37 1 6.0938 1.9353 0.1643 38 1 5.4649 3.2375 1.2633 39 1 4.4370 2.8304 -1.4041 40 1 3.4115 3.4834 -0.0546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119262918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:14 Heat of formation + Delta-G solvation = -140.010854 kcal Electronic energy + Delta-G solvation = -24220.556964 eV Core-core repulsion = 20549.569820 eV Total energy + Delta-G solvation = -3670.987144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11434 -38.86944 -36.94671 -36.34807 -35.81855 -34.74129 -32.99825 -32.22866 -28.33118 -27.98207 -26.22374 -25.96340 -23.70896 -21.79995 -20.80311 -19.95011 -19.29609 -18.01253 -17.65635 -17.03749 -16.55665 -16.35711 -16.05821 -15.74101 -15.34167 -14.92694 -14.48454 -14.25055 -13.90990 -13.39317 -13.04843 -12.79399 -12.57209 -12.33013 -12.14582 -12.04581 -11.96824 -11.89537 -11.83376 -11.60860 -11.32432 -11.18374 -11.15552 -10.93747 -10.84685 -10.69293 -10.55747 -10.39806 -9.96924 -9.77513 -9.37203 -9.11490 -8.41920 -6.06757 -4.09677 0.33745 1.98320 2.61101 2.68699 3.29007 3.36616 3.41454 3.80410 3.94414 4.03224 4.29290 4.35263 4.41843 4.52233 4.60081 5.07031 5.10061 5.11271 5.24502 5.26404 5.29953 5.35292 5.36974 5.50769 5.57645 5.59109 5.60625 5.88523 6.01320 6.22943 6.37610 6.40270 6.69742 6.84461 7.55433 7.65004 7.67974 7.91202 8.31526 8.96578 9.55183 11.04494 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.003841 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.011772 B = 7287.814032 C = 7603.477601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.337 6.337 3 C 0.468 3.532 4 O -0.500 6.500 5 C 0.152 3.848 6 N -1.093 6.093 7 S 2.593 3.407 8 O -0.954 6.954 9 O -0.950 6.950 10 C -0.615 4.615 11 C -0.105 4.105 12 C 0.030 3.970 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.118 4.118 22 C -0.132 4.132 23 C -0.154 4.154 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.422 0.578 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.261 0.739 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 -7.767 20.248 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.251 6.251 3 C 0.309 3.691 4 O -0.387 6.387 5 C 0.060 3.940 6 N -0.850 5.850 7 S 2.689 3.311 8 O -0.945 6.945 9 O -0.940 6.940 10 C -0.747 4.747 11 C -0.144 4.144 12 C -0.008 4.008 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.157 4.157 22 C -0.169 4.169 23 C -0.193 4.193 24 H 0.115 0.885 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.257 0.743 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.275 -7.961 19.818 21.607 hybrid contribution 0.209 0.460 -0.817 0.960 sum -3.066 -7.501 19.001 20.657 Atomic orbital electron populations 1.23240 0.76388 1.03348 1.02547 1.86476 1.23339 1.32476 1.82850 1.23549 0.91046 0.82025 0.72482 1.90659 1.66184 1.36505 1.45377 1.21075 0.85639 0.90973 0.96291 1.55533 1.57957 1.43349 1.28198 1.05636 0.75146 0.77496 0.72802 1.93595 1.75015 1.47929 1.77931 1.93582 1.28630 1.87191 1.84581 1.30824 1.12948 1.20226 1.10684 1.21513 1.02232 1.03734 0.86923 1.19073 0.96046 0.90623 0.95053 1.21284 1.33796 1.08037 0.93292 0.92326 1.25014 0.95011 0.95449 0.98866 1.69967 1.36260 1.11412 1.35739 0.86504 0.78158 0.78064 0.85125 1.19606 1.20942 1.20922 1.23183 0.97903 1.01397 0.93167 1.22839 0.96883 0.99297 0.97928 1.23841 0.98640 0.93736 1.03053 0.88459 0.92360 0.91264 0.74259 0.84966 0.84910 0.91478 0.91560 0.96036 0.96041 0.92945 0.88118 0.89203 0.88934 0.89801 0.88487 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.63 101.05 1.07 1.51 16 2 O -0.34 -4.67 9.12 -45.89 -0.42 -5.09 16 3 C 0.47 6.53 5.62 36.01 0.20 6.73 16 4 O -0.50 -7.91 15.58 -18.75 -0.29 -8.20 16 5 C 0.15 1.64 1.28 -132.16 -0.17 1.47 16 6 N -1.09 -11.80 5.43 0.26 0.00 -11.80 16 7 S 2.59 38.55 5.46 -107.50 -0.59 37.97 16 8 O -0.95 -16.64 18.08 -57.54 -1.04 -17.68 16 9 O -0.95 -16.64 14.96 -65.58 -0.98 -17.62 16 10 C -0.62 -9.44 4.48 37.15 0.17 -9.27 16 11 C -0.10 -2.11 5.16 -26.74 -0.14 -2.25 16 12 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 13 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 C -0.12 -0.85 7.35 -25.83 -0.19 -1.04 16 22 C -0.13 -0.92 8.00 -25.83 -0.21 -1.13 16 23 C -0.15 -1.54 6.89 -25.92 -0.18 -1.71 16 24 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.58 8.00 -51.92 -0.42 0.17 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.42 3.38 8.72 -34.47 -0.30 3.08 16 28 H 0.13 1.89 6.30 -51.92 -0.33 1.56 16 29 H 0.13 1.73 8.07 -51.93 -0.42 1.31 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.10 0.67 8.09 -51.92 -0.42 0.25 16 36 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 1.00 4.43 -51.93 -0.23 0.77 16 40 H 0.12 1.19 7.34 -51.93 -0.38 0.81 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -36.20 341.97 -8.27 -44.48 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.84 Total: 0.53 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 0.01 Total: -18.58 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.74 Total: -37.49 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -2.73 Total: -48.58 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 38.55 SS G_CDS: -0.59 Total: 37.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.20 -8.27 -44.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119262918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.534 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds