Wall clock time and date at job start Fri Apr 10 2020 14:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99563 * 2 1 4 4 O 1.20825 * 120.00678 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99994 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47403 * 174.26439 * 5 3 2 7 7 C 1.53003 * 115.54432 * 294.44822 * 6 5 3 8 8 S 1.81396 * 109.47205 * 278.81143 * 7 6 5 9 9 O 1.42105 * 110.54376 * 62.86995 * 8 7 6 10 10 O 1.42099 * 110.54593 * 286.11899 * 8 7 6 11 11 N 1.65598 * 104.44875 * 174.49358 * 8 7 6 12 12 C 1.46498 * 120.00112 * 64.72457 * 11 8 7 13 13 C 1.52998 * 109.47551 * 165.27406 * 12 11 8 14 14 C 1.50698 * 109.47293 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00199 * 359.97438 * 14 13 12 16 16 C 1.37887 * 119.99781 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99667 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47225 * 60.00291 * 18 16 14 20 20 H 1.48505 * 109.46830 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47674 * 300.00168 * 18 16 14 22 22 C 1.52998 * 117.51951 * 80.15094 * 6 5 3 23 23 C 1.52996 * 117.49978 * 148.78521 * 6 5 3 24 24 H 1.09001 * 109.46939 * 299.99861 * 1 2 3 25 25 H 1.08995 * 109.47544 * 60.00197 * 1 2 3 26 26 H 1.09005 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47482 * 54.25786 * 5 3 2 28 28 H 1.09009 * 109.46920 * 294.26127 * 5 3 2 29 29 H 1.08998 * 109.46647 * 158.81225 * 7 6 5 30 30 H 1.08999 * 109.47182 * 38.81604 * 7 6 5 31 31 H 0.96998 * 120.00111 * 244.99856 * 11 8 7 32 32 H 1.09002 * 109.47279 * 285.28157 * 12 11 8 33 33 H 1.09003 * 109.46913 * 45.27636 * 12 11 8 34 34 H 1.09000 * 109.47138 * 300.00216 * 13 12 11 35 35 H 1.09003 * 109.46824 * 60.00176 * 13 12 11 36 36 H 0.97005 * 119.99476 * 179.97438 * 17 16 14 37 37 H 1.09000 * 117.49402 * 214.97242 * 22 6 5 38 38 H 1.08998 * 117.49754 * 359.97438 * 22 6 5 39 39 H 1.08995 * 117.50346 * 359.96544 * 23 6 5 40 40 H 1.08998 * 117.50252 * 144.99972 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0003 2.7351 -0.1446 7 6 3.6458 3.4005 -1.4759 8 16 4.8729 2.9376 -2.7291 9 8 4.8482 1.5352 -2.9571 10 8 6.0979 3.6217 -2.5042 11 7 4.2930 3.5903 -4.1362 12 6 4.1886 5.0444 -4.2807 13 6 3.9862 5.3972 -5.7556 14 6 3.8795 6.8930 -5.9043 15 1 3.9487 7.5285 -5.0339 16 6 3.6924 7.4502 -7.1517 17 7 3.6076 6.6763 -8.2116 18 14 3.5595 9.3044 -7.3359 19 1 4.8065 9.9416 -6.8416 20 1 3.3631 9.6467 -8.7675 21 1 2.4040 9.7989 -6.5451 22 6 3.9719 3.6082 1.1114 23 6 5.3103 3.1521 0.5268 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.9603 0.6948 -0.8349 28 1 3.9516 0.8721 0.9362 29 1 3.6441 4.4834 -1.3517 30 1 2.6575 3.0699 -1.7955 31 1 4.0186 3.0098 -4.8632 32 1 3.3402 5.4073 -3.7005 33 1 5.1038 5.5122 -3.9176 34 1 4.8346 5.0344 -6.3358 35 1 3.0710 4.9294 -6.1188 36 1 3.4757 7.0683 -9.0890 37 1 3.7005 4.6568 0.9892 38 1 3.6434 3.1427 2.0406 39 1 5.8626 2.3866 1.0717 40 1 5.9195 3.9007 0.0203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343978601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:27 Heat of formation + Delta-G solvation = -144.304719 kcal Electronic energy + Delta-G solvation = -23422.228827 eV Core-core repulsion = 19751.055487 eV Total energy + Delta-G solvation = -3671.173340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82430 -38.53481 -36.89756 -36.48731 -35.73404 -35.37108 -32.74495 -30.70546 -29.24916 -29.07706 -27.43053 -24.49193 -22.79651 -21.95874 -21.16652 -19.87195 -18.91831 -17.85970 -17.38549 -16.95879 -16.80362 -16.31183 -15.94281 -15.85298 -15.26520 -14.96339 -14.53271 -14.04167 -13.83170 -13.80778 -13.68008 -12.82342 -12.67860 -12.54861 -12.36075 -11.98798 -11.94407 -11.82900 -11.75161 -11.64107 -11.39103 -11.28660 -11.09311 -11.04133 -10.93123 -10.63322 -10.54200 -10.46066 -9.86544 -9.58055 -9.29290 -8.87305 -8.41128 -6.08364 -4.12103 0.45547 1.97534 2.38170 3.02570 3.30441 3.35002 3.37492 3.42859 3.86153 4.09420 4.22092 4.35108 4.40613 4.48197 4.55072 4.79722 4.84412 4.92159 5.04812 5.22182 5.25723 5.28262 5.29478 5.42200 5.43518 5.69234 5.74594 5.78773 5.88209 6.13833 6.15889 6.45196 6.71517 7.41468 7.51503 7.55212 7.64806 7.89957 8.27381 8.93517 9.52473 11.03023 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.003400 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.917209 B = 8233.872212 C = 8622.955945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.461 3.539 4 O -0.495 6.495 5 C -0.092 4.092 6 C -0.117 4.117 7 C -0.593 4.593 8 S 2.607 3.393 9 O -0.969 6.969 10 O -0.955 6.955 11 N -1.115 6.115 12 C 0.115 3.885 13 C 0.018 3.982 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.141 4.141 23 C -0.180 4.180 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.415 0.585 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -12.648 19.392 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.303 3.697 4 O -0.381 6.381 5 C -0.130 4.130 6 C -0.119 4.119 7 C -0.720 4.720 8 S 2.700 3.300 9 O -0.959 6.959 10 O -0.945 6.945 11 N -0.876 5.876 12 C -0.010 4.010 13 C -0.021 4.021 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.179 4.179 23 C -0.217 4.217 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.250 0.750 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.119 -12.708 19.429 23.312 hybrid contribution -1.265 1.192 -0.401 1.784 sum -3.384 -11.515 19.028 22.497 Atomic orbital electron populations 1.23284 0.76199 1.03746 1.02687 1.86509 1.23557 1.33469 1.84195 1.23643 0.91956 0.81466 0.72630 1.90690 1.66985 1.36096 1.44376 1.21123 0.88380 0.96202 1.07269 1.20495 1.04085 0.93794 0.93533 1.30276 1.19526 1.11266 1.10978 1.05005 0.76091 0.73941 0.75000 1.93542 1.87475 1.30755 1.84165 1.93581 1.40071 1.75347 1.85453 1.55567 1.84229 1.16618 1.31187 1.21675 1.00212 0.75946 1.03199 1.19272 0.97978 0.96886 0.87937 1.21056 1.50625 0.91500 0.93327 0.92297 1.25009 0.95053 0.98335 0.95887 1.69952 1.49303 1.35148 0.98714 0.86585 0.78718 0.85251 0.77024 1.20073 1.21243 1.20165 1.23034 0.99257 1.00281 0.95368 1.23567 0.90313 1.04515 1.03303 0.91932 0.91657 0.88049 0.85674 0.86453 0.84311 0.84393 0.75011 0.93070 0.91279 0.95532 0.95809 0.92751 0.87765 0.88291 0.87256 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.74 10.57 -39.25 -0.41 -4.15 16 3 C 0.46 5.25 7.59 36.01 0.27 5.52 16 4 O -0.49 -6.77 14.52 -18.75 -0.27 -7.04 16 5 C -0.09 -0.89 5.70 -27.88 -0.16 -1.05 16 6 C -0.12 -1.26 0.98 -154.51 -0.15 -1.41 16 7 C -0.59 -7.32 5.75 37.16 0.21 -7.10 16 8 S 2.61 39.56 5.24 -107.50 -0.56 39.00 16 9 O -0.97 -15.98 16.95 -57.54 -0.98 -16.96 16 10 O -0.95 -17.03 16.67 -57.54 -0.96 -17.99 16 11 N -1.12 -18.87 5.89 -10.61 -0.06 -18.93 16 12 C 0.11 2.26 6.06 -4.04 -0.02 2.23 16 13 C 0.02 0.45 5.11 -27.89 -0.14 0.30 16 14 C -0.53 -14.39 9.11 -34.44 -0.31 -14.70 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 18 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.14 -1.30 9.78 -26.73 -0.26 -1.56 16 23 C -0.18 -1.68 9.54 -26.73 -0.25 -1.93 16 24 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.13 1.24 6.99 -51.93 -0.36 0.88 16 28 H 0.12 0.76 8.09 -51.92 -0.42 0.34 16 29 H 0.14 1.57 7.94 -51.93 -0.41 1.15 16 30 H 0.14 1.71 6.71 -51.92 -0.35 1.36 16 31 H 0.42 6.69 8.62 -34.47 -0.30 6.40 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.37 7.71 -51.93 -0.40 0.97 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.12 1.23 7.44 -51.93 -0.39 0.84 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -34.71 352.33 -8.04 -42.75 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.97 Total: 4.13 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 0.15 Total: -16.81 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.67 Total: -44.41 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -2.62 Total: -46.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 39.56 SS G_CDS: -0.56 Total: 39.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.71 -8.04 -42.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343978601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.551 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds