Wall clock time and date at job start Fri Apr 10 2020 14:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99563 * 2 1 4 4 O 1.20825 * 120.00678 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99994 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47403 * 174.26439 * 5 3 2 7 7 C 1.53003 * 115.54432 * 294.44822 * 6 5 3 8 8 S 1.81396 * 109.47205 * 278.81143 * 7 6 5 9 9 O 1.42105 * 110.54376 * 62.86995 * 8 7 6 10 10 O 1.42099 * 110.54593 * 286.11899 * 8 7 6 11 11 N 1.65598 * 104.44875 * 174.49358 * 8 7 6 12 12 C 1.46498 * 120.00112 * 64.72457 * 11 8 7 13 13 C 1.52998 * 109.47551 * 165.27406 * 12 11 8 14 14 C 1.50698 * 109.47293 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00199 * 359.97438 * 14 13 12 16 16 C 1.37887 * 119.99781 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99667 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47225 * 60.00291 * 18 16 14 20 20 H 1.48505 * 109.46830 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47674 * 300.00168 * 18 16 14 22 22 C 1.52998 * 117.51951 * 80.15094 * 6 5 3 23 23 C 1.52996 * 117.49978 * 148.78521 * 6 5 3 24 24 H 1.09001 * 109.46939 * 299.99861 * 1 2 3 25 25 H 1.08995 * 109.47544 * 60.00197 * 1 2 3 26 26 H 1.09005 * 109.46854 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47482 * 54.25786 * 5 3 2 28 28 H 1.09009 * 109.46920 * 294.26127 * 5 3 2 29 29 H 1.08998 * 109.46647 * 158.81225 * 7 6 5 30 30 H 1.08999 * 109.47182 * 38.81604 * 7 6 5 31 31 H 0.96998 * 120.00111 * 244.99856 * 11 8 7 32 32 H 1.09002 * 109.47279 * 285.28157 * 12 11 8 33 33 H 1.09003 * 109.46913 * 45.27636 * 12 11 8 34 34 H 1.09000 * 109.47138 * 300.00216 * 13 12 11 35 35 H 1.09003 * 109.46824 * 60.00176 * 13 12 11 36 36 H 0.97005 * 119.99476 * 179.97438 * 17 16 14 37 37 H 1.09000 * 117.49402 * 214.97242 * 22 6 5 38 38 H 1.08998 * 117.49754 * 359.97438 * 22 6 5 39 39 H 1.08995 * 117.50346 * 359.96544 * 23 6 5 40 40 H 1.08998 * 117.50252 * 144.99972 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0003 2.7351 -0.1446 7 6 3.6458 3.4005 -1.4759 8 16 4.8729 2.9376 -2.7291 9 8 4.8482 1.5352 -2.9571 10 8 6.0979 3.6217 -2.5042 11 7 4.2930 3.5903 -4.1362 12 6 4.1886 5.0444 -4.2807 13 6 3.9862 5.3972 -5.7556 14 6 3.8795 6.8930 -5.9043 15 1 3.9487 7.5285 -5.0339 16 6 3.6924 7.4502 -7.1517 17 7 3.6076 6.6763 -8.2116 18 14 3.5595 9.3044 -7.3359 19 1 4.8065 9.9416 -6.8416 20 1 3.3631 9.6467 -8.7675 21 1 2.4040 9.7989 -6.5451 22 6 3.9719 3.6082 1.1114 23 6 5.3103 3.1521 0.5268 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.9603 0.6948 -0.8349 28 1 3.9516 0.8721 0.9362 29 1 3.6441 4.4834 -1.3517 30 1 2.6575 3.0699 -1.7955 31 1 4.0186 3.0098 -4.8632 32 1 3.3402 5.4073 -3.7005 33 1 5.1038 5.5122 -3.9176 34 1 4.8346 5.0344 -6.3358 35 1 3.0710 4.9294 -6.1188 36 1 3.4757 7.0683 -9.0890 37 1 3.7005 4.6568 0.9892 38 1 3.6434 3.1427 2.0406 39 1 5.8626 2.3866 1.0717 40 1 5.9195 3.9007 0.0203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343978601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:26 Heat of formation + Delta-G solvation = -169.084498 kcal Electronic energy + Delta-G solvation = -23423.303358 eV Core-core repulsion = 19751.055487 eV Total energy + Delta-G solvation = -3672.247871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63932 -39.29894 -38.20532 -37.32752 -37.10752 -36.92654 -34.73585 -31.44724 -31.01842 -30.13339 -28.08686 -26.42299 -23.49110 -23.02692 -22.72208 -20.89349 -20.01926 -18.89954 -18.62263 -18.19334 -17.84509 -17.60014 -17.25356 -16.87422 -16.47043 -16.18326 -15.90193 -15.47992 -15.33421 -14.55606 -14.47876 -14.39355 -13.73852 -13.54579 -13.37164 -13.27796 -13.13918 -13.12116 -12.99196 -12.94845 -12.76024 -12.45870 -12.44492 -12.39116 -12.24425 -11.79583 -11.76070 -11.51683 -11.34274 -11.27692 -10.81947 -10.58087 -10.22789 -8.21311 -6.32603 -0.75570 1.14704 1.43101 1.46048 1.53556 1.67209 1.74914 2.42472 2.64736 2.77176 3.13430 3.14357 3.34714 3.44238 3.57352 3.82934 4.01067 4.17769 4.23435 4.30401 4.31989 4.42872 4.51691 4.55528 4.61406 4.72039 4.77662 4.83004 4.93547 4.97888 5.02145 5.20497 5.37458 5.48265 5.61399 5.79656 6.00455 6.21299 6.70534 6.83237 7.36889 8.90714 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.003400 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.917209 B = 8233.872212 C = 8622.955945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.459 3.541 4 O -0.523 6.523 5 C -0.093 4.093 6 C -0.142 4.142 7 C -0.573 4.573 8 S 2.615 3.385 9 O -0.984 6.984 10 O -0.984 6.984 11 N -1.122 6.122 12 C 0.127 3.873 13 C 0.019 3.981 14 C -0.546 4.546 15 H 0.070 0.930 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.264 1.264 22 C -0.131 4.131 23 C -0.177 4.177 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.417 0.583 32 H 0.074 0.926 33 H 0.067 0.933 34 H -0.003 1.003 35 H 0.007 0.993 36 H 0.264 0.736 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -12.355 21.682 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.412 6.412 5 C -0.130 4.130 6 C -0.144 4.144 7 C -0.704 4.704 8 S 2.711 3.289 9 O -0.974 6.974 10 O -0.974 6.974 11 N -0.881 5.881 12 C 0.002 3.998 13 C -0.020 4.020 14 C -0.585 4.585 15 H 0.088 0.912 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.169 4.169 23 C -0.214 4.214 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.015 0.985 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.154 0.846 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.487 -12.439 21.694 25.130 hybrid contribution -1.180 1.012 -1.055 1.879 sum -3.667 -11.427 20.639 23.874 Atomic orbital electron populations 1.23539 0.74940 1.05658 1.02491 1.86507 1.24899 1.33040 1.83817 1.24008 0.92628 0.81289 0.71747 1.90672 1.67712 1.36937 1.45903 1.21242 0.87272 0.95570 1.08957 1.20657 1.05884 0.94773 0.93099 1.30050 1.17530 1.12305 1.10530 1.04750 0.76050 0.73228 0.74839 1.93517 1.87855 1.31458 1.84588 1.93540 1.42469 1.75649 1.85752 1.55528 1.84502 1.15452 1.32653 1.21357 1.01049 0.77587 0.99846 1.19155 0.95861 0.95946 0.91027 1.21566 1.50069 0.92939 0.93889 0.91171 1.25972 0.94655 1.03489 0.95607 1.70090 1.50474 1.37352 0.99247 0.85471 0.79251 0.79095 0.77058 1.19189 1.21115 1.18856 1.23142 0.98679 1.00013 0.95047 1.23690 0.90076 1.04779 1.02823 0.91550 0.92469 0.85173 0.86161 0.82894 0.83051 0.84250 0.74918 0.90759 0.91490 0.98452 0.97471 0.92710 0.87918 0.86378 0.84627 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.37 -7.00 10.57 -51.39 -0.54 -7.54 16 3 C 0.46 9.69 7.59 71.24 0.54 10.23 16 4 O -0.52 -13.59 14.52 21.97 0.32 -13.27 16 5 C -0.09 -1.59 5.70 29.85 0.17 -1.42 16 6 C -0.14 -2.74 0.98 -52.18 -0.05 -2.79 16 7 C -0.57 -13.33 5.75 71.98 0.41 -12.91 16 8 S 2.61 78.35 5.24 -56.49 -0.30 78.06 16 9 O -0.98 -32.20 16.95 -127.65 -2.16 -34.37 16 10 O -0.98 -34.93 16.67 -127.65 -2.13 -37.05 16 11 N -1.12 -38.33 5.89 -187.49 -1.10 -39.43 16 12 C 0.13 5.01 6.06 86.38 0.52 5.54 16 13 C 0.02 0.95 5.11 29.85 0.15 1.11 16 14 C -0.55 -30.02 9.11 25.60 0.23 -29.79 16 15 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 18 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 C -0.13 -2.03 9.78 30.60 0.30 -1.73 16 23 C -0.18 -2.85 9.54 30.59 0.29 -2.55 16 24 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 25 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 26 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.12 2.19 6.99 -2.39 -0.02 2.17 16 28 H 0.15 1.42 8.09 -2.38 -0.02 1.40 16 29 H 0.15 3.14 7.94 -2.39 -0.02 3.12 16 30 H 0.14 3.30 6.71 -2.39 -0.02 3.28 16 31 H 0.42 13.84 8.62 -96.75 -0.83 13.01 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.65 7.71 -2.39 -0.02 2.64 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 37 H 0.10 1.63 8.08 -2.39 -0.02 1.61 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.11 2.02 7.44 -2.39 -0.02 2.00 16 Total: -1.00 -74.93 352.33 0.84 -74.08 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.21 Total: 21.95 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 4.23 Total: -32.21 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -0.82 Total: -94.96 kcal Atomic # 8 Polarization: -87.72 SS G_CDS: -4.52 Total: -92.23 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 78.35 SS G_CDS: -0.30 Total: 78.06 kcal Total: -74.93 0.84 -74.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343978601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.000 kcal (2) G-P(sol) polarization free energy of solvation -74.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds