Wall clock time and date at job start Fri Apr 10 2020 14:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34233 * 116.99771 * 2 1 4 4 O 1.20826 * 120.00119 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99774 * 179.97438 * 3 2 1 6 6 C 1.53000 * 110.01834 * 303.31644 * 5 3 2 7 7 S 1.81403 * 109.47291 * 305.84494 * 6 5 3 8 8 O 1.42098 * 110.54435 * 71.77139 * 7 6 5 9 9 O 1.42108 * 110.54026 * 295.02547 * 7 6 5 10 10 N 1.65598 * 104.44871 * 183.39959 * 7 6 5 11 11 C 1.46497 * 119.99898 * 65.00031 * 10 7 6 12 12 C 1.50699 * 109.47114 * 164.99479 * 11 10 7 13 13 H 1.08000 * 120.00214 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00148 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99922 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99835 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47573 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46879 * 120.00232 * 16 14 12 19 19 H 1.48501 * 109.46975 * 239.99745 * 16 14 12 20 20 C 1.54259 * 110.03381 * 64.71031 * 5 3 2 21 21 C 1.54968 * 104.16010 * 95.75275 * 20 5 3 22 22 C 1.54886 * 102.77517 * 37.88993 * 21 20 5 23 23 C 1.53875 * 110.03031 * 181.93002 * 5 3 2 24 24 H 1.08995 * 109.47043 * 60.00132 * 1 2 3 25 25 H 1.08996 * 109.46681 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47085 * 299.99732 * 1 2 3 27 27 H 1.08994 * 109.47177 * 185.84301 * 6 5 3 28 28 H 1.09005 * 109.46847 * 65.84097 * 6 5 3 29 29 H 0.97000 * 119.99650 * 244.99205 * 10 7 6 30 30 H 1.08999 * 109.47092 * 284.99516 * 11 10 7 31 31 H 1.09005 * 109.47662 * 44.99840 * 11 10 7 32 32 H 0.96997 * 119.99653 * 180.02562 * 15 14 12 33 33 H 1.09002 * 110.49032 * 214.40213 * 20 5 3 34 34 H 1.09005 * 110.48532 * 337.04511 * 20 5 3 35 35 H 1.09000 * 110.71981 * 279.57113 * 21 20 5 36 36 H 1.09000 * 110.76500 * 156.22435 * 21 20 5 37 37 H 1.09002 * 110.48551 * 203.40712 * 22 21 20 38 38 H 1.08999 * 110.49168 * 80.76357 * 22 21 20 39 39 H 1.09007 * 110.03444 * 359.94657 * 23 5 3 40 40 H 1.09002 * 110.03662 * 121.38087 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1302 0.5141 1.2023 7 16 3.3622 1.1332 2.7246 8 8 2.0073 0.7127 2.8062 9 8 3.7233 2.4890 2.9495 10 7 4.1218 0.3014 3.9385 11 6 5.5531 0.5007 4.1786 12 6 5.9194 -0.0624 5.5276 13 1 5.1618 -0.5232 6.1442 14 6 7.2218 0.0095 5.9742 15 7 8.1445 0.5701 5.2232 16 14 7.6758 -0.6892 7.6461 17 1 6.4656 -1.2616 8.2887 18 1 8.6966 -1.7544 7.4767 19 1 8.2265 0.3925 8.5017 20 6 4.1270 0.6840 -1.3094 21 6 4.3344 1.9180 -2.2236 22 6 4.8369 2.9975 -1.2331 23 6 4.0171 2.7454 0.0492 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 5.2088 0.6628 1.2530 28 1 3.9148 -0.5489 1.0929 29 1 3.6189 -0.3177 4.4905 30 1 6.1260 -0.0095 3.4042 31 1 5.7805 1.5665 4.1560 32 1 9.0608 0.6204 5.5373 33 1 5.0767 0.1817 -1.1257 34 1 3.4096 -0.0053 -1.7547 35 1 3.3929 2.2217 -2.6811 36 1 5.0866 1.7126 -2.9853 37 1 4.6375 3.9956 -1.6232 38 1 5.9013 2.8694 -1.0367 39 1 3.1472 3.4020 0.0713 40 1 4.6375 2.9170 0.9288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349500044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:18 Heat of formation + Delta-G solvation = -169.820165 kcal Electronic energy + Delta-G solvation = -24625.361361 eV Core-core repulsion = 20953.081588 eV Total energy + Delta-G solvation = -3672.279772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03406 -38.21544 -36.62566 -36.38017 -35.47878 -34.67268 -32.19613 -32.08710 -29.00501 -27.77050 -26.78833 -25.89212 -22.92443 -22.55051 -21.01530 -19.62501 -18.87872 -17.58108 -17.36264 -17.11521 -16.61519 -16.01784 -15.62462 -15.55820 -15.24727 -14.69443 -14.65508 -13.73375 -13.58643 -13.43575 -13.20792 -13.00382 -12.64066 -12.16474 -12.09546 -12.05662 -11.84559 -11.79582 -11.67850 -11.50818 -11.29062 -11.11990 -11.07618 -10.98101 -10.77349 -10.75023 -10.64579 -10.35872 -10.24500 -10.11913 -9.45990 -8.92706 -8.25973 -6.22213 -4.26598 0.67692 2.01159 2.56867 3.22462 3.27266 3.31043 3.36472 4.02406 4.13938 4.26239 4.31874 4.50944 4.60702 4.74919 4.98836 5.09084 5.12664 5.15597 5.23899 5.27694 5.34099 5.45166 5.52431 5.56150 5.66329 5.68668 5.78243 5.96215 6.02156 6.15386 6.23918 6.36614 6.38248 7.18319 7.28311 7.60699 7.75638 7.77400 8.13286 8.77877 9.38850 10.88365 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.004452 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.227584 B = 6287.133827 C = 7012.384090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.344 6.344 3 C 0.452 3.548 4 O -0.490 6.490 5 C -0.036 4.036 6 C -0.631 4.631 7 S 2.597 3.403 8 O -0.970 6.970 9 O -0.949 6.949 10 N -1.104 6.104 11 C 0.241 3.759 12 C -0.529 4.529 13 H 0.067 0.933 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.104 4.104 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.146 4.146 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.152 0.848 28 H 0.143 0.857 29 H 0.410 0.590 30 H 0.021 0.979 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 -1.520 -15.070 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.259 6.259 3 C 0.293 3.707 4 O -0.377 6.377 5 C -0.039 4.039 6 C -0.758 4.758 7 S 2.688 3.312 8 O -0.961 6.961 9 O -0.939 6.939 10 N -0.866 5.866 11 C 0.118 3.882 12 C -0.569 4.569 13 H 0.085 0.915 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.142 4.142 21 C -0.167 4.167 22 C -0.156 4.156 23 C -0.183 4.183 24 H 0.078 0.922 25 H 0.120 0.880 26 H 0.091 0.909 27 H 0.170 0.830 28 H 0.161 0.839 29 H 0.244 0.756 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.754 -0.408 -15.079 17.441 hybrid contribution 0.455 -1.139 0.845 1.490 sum -8.299 -1.547 -14.234 16.549 Atomic orbital electron populations 1.23324 0.75921 1.03843 1.02752 1.86447 1.23812 1.32360 1.83321 1.23664 0.91815 0.82084 0.73121 1.90649 1.66581 1.36186 1.44261 1.20864 0.86818 0.98743 0.97480 1.30915 1.15337 1.12045 1.17516 1.05177 0.74280 0.75528 0.76224 1.93548 1.33210 1.83355 1.85938 1.93589 1.84112 1.32976 1.83192 1.55497 1.22235 1.61658 1.47196 1.19140 0.73257 0.97847 0.97976 1.21228 0.94504 1.39324 1.01823 0.91522 1.24975 0.96140 0.95090 0.97988 1.69935 1.02262 1.43396 1.37317 0.86351 0.78548 0.78743 0.83262 1.19563 1.20811 1.20729 1.22498 1.02150 0.98026 0.91543 1.22596 1.01501 0.94891 0.97665 1.22324 0.99981 0.99155 0.94114 1.22778 1.02738 0.91824 1.00959 0.92192 0.88009 0.90939 0.83037 0.83875 0.75575 0.96100 0.94219 0.92457 0.89015 0.90362 0.91402 0.90602 0.90870 0.90692 0.88392 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.34 -4.93 10.08 -40.27 -0.41 -5.33 16 3 C 0.45 7.12 4.55 36.01 0.16 7.28 16 4 O -0.49 -8.70 14.96 -18.75 -0.28 -8.98 16 5 C -0.04 -0.51 0.63 -154.55 -0.10 -0.61 16 6 C -0.63 -9.13 4.66 37.16 0.17 -8.96 16 7 S 2.60 49.17 4.79 -107.50 -0.52 48.66 16 8 O -0.97 -19.49 16.63 -58.80 -0.98 -20.47 16 9 O -0.95 -20.79 15.44 -57.54 -0.89 -21.68 16 10 N -1.10 -22.50 5.88 -11.66 -0.07 -22.57 16 11 C 0.24 5.85 5.88 -5.20 -0.03 5.81 16 12 C -0.53 -14.07 9.27 -34.44 -0.32 -14.39 16 13 H 0.07 1.71 7.65 -52.49 -0.40 1.31 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 16 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.10 -1.10 5.90 -25.03 -0.15 -1.25 16 21 C -0.13 -1.23 6.91 -24.70 -0.17 -1.40 16 22 C -0.12 -1.28 6.83 -25.07 -0.17 -1.45 16 23 C -0.15 -2.08 5.34 -25.61 -0.14 -2.22 16 24 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 27 H 0.15 2.00 8.14 -51.93 -0.42 1.58 16 28 H 0.14 1.75 8.14 -51.92 -0.42 1.32 16 29 H 0.41 7.80 8.50 -34.47 -0.29 7.51 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 1.05 7.69 -51.93 -0.40 0.65 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 33 H 0.09 0.85 7.85 -51.93 -0.41 0.45 16 34 H 0.08 0.76 7.71 -51.93 -0.40 0.36 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.51 6.40 -51.92 -0.33 1.18 16 40 H 0.10 1.54 6.10 -51.93 -0.32 1.22 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -33.24 339.52 -7.98 -41.22 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.91 Total: 6.84 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 0.23 Total: -14.15 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.67 Total: -46.78 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -2.55 Total: -56.46 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 49.17 SS G_CDS: -0.52 Total: 48.66 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.24 -7.98 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349500044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.600 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds