Wall clock time and date at job start Fri Apr 10 2020 14:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34233 * 116.99771 * 2 1 4 4 O 1.20826 * 120.00119 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99774 * 179.97438 * 3 2 1 6 6 C 1.53000 * 110.01834 * 303.31644 * 5 3 2 7 7 S 1.81403 * 109.47291 * 305.84494 * 6 5 3 8 8 O 1.42098 * 110.54435 * 71.77139 * 7 6 5 9 9 O 1.42108 * 110.54026 * 295.02547 * 7 6 5 10 10 N 1.65598 * 104.44871 * 183.39959 * 7 6 5 11 11 C 1.46497 * 119.99898 * 65.00031 * 10 7 6 12 12 C 1.50699 * 109.47114 * 164.99479 * 11 10 7 13 13 H 1.08000 * 120.00214 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00148 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99922 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99835 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47573 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46879 * 120.00232 * 16 14 12 19 19 H 1.48501 * 109.46975 * 239.99745 * 16 14 12 20 20 C 1.54259 * 110.03381 * 64.71031 * 5 3 2 21 21 C 1.54968 * 104.16010 * 95.75275 * 20 5 3 22 22 C 1.54886 * 102.77517 * 37.88993 * 21 20 5 23 23 C 1.53875 * 110.03031 * 181.93002 * 5 3 2 24 24 H 1.08995 * 109.47043 * 60.00132 * 1 2 3 25 25 H 1.08996 * 109.46681 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47085 * 299.99732 * 1 2 3 27 27 H 1.08994 * 109.47177 * 185.84301 * 6 5 3 28 28 H 1.09005 * 109.46847 * 65.84097 * 6 5 3 29 29 H 0.97000 * 119.99650 * 244.99205 * 10 7 6 30 30 H 1.08999 * 109.47092 * 284.99516 * 11 10 7 31 31 H 1.09005 * 109.47662 * 44.99840 * 11 10 7 32 32 H 0.96997 * 119.99653 * 180.02562 * 15 14 12 33 33 H 1.09002 * 110.49032 * 214.40213 * 20 5 3 34 34 H 1.09005 * 110.48532 * 337.04511 * 20 5 3 35 35 H 1.09000 * 110.71981 * 279.57113 * 21 20 5 36 36 H 1.09000 * 110.76500 * 156.22435 * 21 20 5 37 37 H 1.09002 * 110.48551 * 203.40712 * 22 21 20 38 38 H 1.08999 * 110.49168 * 80.76357 * 22 21 20 39 39 H 1.09007 * 110.03444 * 359.94657 * 23 5 3 40 40 H 1.09002 * 110.03662 * 121.38087 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1302 0.5141 1.2023 7 16 3.3622 1.1332 2.7246 8 8 2.0073 0.7127 2.8062 9 8 3.7233 2.4890 2.9495 10 7 4.1218 0.3014 3.9385 11 6 5.5531 0.5007 4.1786 12 6 5.9194 -0.0624 5.5276 13 1 5.1618 -0.5232 6.1442 14 6 7.2218 0.0095 5.9742 15 7 8.1445 0.5701 5.2232 16 14 7.6758 -0.6892 7.6461 17 1 6.4656 -1.2616 8.2887 18 1 8.6966 -1.7544 7.4767 19 1 8.2265 0.3925 8.5017 20 6 4.1270 0.6840 -1.3094 21 6 4.3344 1.9180 -2.2236 22 6 4.8369 2.9975 -1.2331 23 6 4.0171 2.7454 0.0492 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 5.2088 0.6628 1.2530 28 1 3.9148 -0.5489 1.0929 29 1 3.6189 -0.3177 4.4905 30 1 6.1260 -0.0095 3.4042 31 1 5.7805 1.5665 4.1560 32 1 9.0608 0.6204 5.5373 33 1 5.0767 0.1817 -1.1257 34 1 3.4096 -0.0053 -1.7547 35 1 3.3929 2.2217 -2.6811 36 1 5.0866 1.7126 -2.9853 37 1 4.6375 3.9956 -1.6232 38 1 5.9013 2.8694 -1.0367 39 1 3.1472 3.4020 0.0713 40 1 4.6375 2.9170 0.9288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349500044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:18 Heat of formation + Delta-G solvation = -193.632675 kcal Electronic energy + Delta-G solvation = -24626.393949 eV Core-core repulsion = 20953.081588 eV Total energy + Delta-G solvation = -3673.312360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.17758 -39.23182 -38.21585 -37.56374 -37.08609 -36.49553 -34.14757 -33.12120 -29.93029 -28.81319 -28.69017 -26.99546 -24.50016 -23.97716 -21.88110 -20.84419 -20.34654 -19.26707 -18.55684 -18.26994 -18.10661 -17.40296 -17.34166 -16.93096 -16.52782 -16.16544 -15.72402 -15.30844 -14.68525 -14.64295 -14.44567 -14.21670 -14.11234 -14.04271 -13.61355 -13.35046 -13.16278 -13.12667 -13.04815 -12.79474 -12.75733 -12.51652 -12.14861 -12.11864 -12.05627 -11.98186 -11.83110 -11.71873 -11.55514 -11.40576 -11.32754 -10.83081 -10.09519 -8.26065 -6.37493 -0.81248 0.81430 1.44030 1.45875 1.49633 1.57576 1.75493 2.41146 2.64741 3.03416 3.09024 3.14303 3.24973 3.46331 3.72297 4.00969 4.16944 4.24707 4.32023 4.33218 4.34697 4.46741 4.53770 4.58188 4.67884 4.72431 4.86937 4.99457 5.10342 5.15405 5.18272 5.24085 5.25351 5.29209 5.42680 5.73483 5.97110 6.27176 6.44059 6.75777 7.32230 8.85230 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.004452 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.227584 B = 6287.133827 C = 7012.384090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.345 6.345 3 C 0.446 3.554 4 O -0.520 6.520 5 C -0.042 4.042 6 C -0.605 4.605 7 S 2.588 3.412 8 O -0.987 6.987 9 O -0.990 6.990 10 N -1.106 6.106 11 C 0.251 3.749 12 C -0.552 4.552 13 H 0.070 0.930 14 C 0.011 3.989 15 N -0.923 5.923 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.281 1.281 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.138 0.862 26 H 0.051 0.949 27 H 0.170 0.830 28 H 0.175 0.825 29 H 0.415 0.585 30 H 0.028 0.972 31 H 0.010 0.990 32 H 0.270 0.730 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 -3.439 -16.454 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.260 6.260 3 C 0.288 3.712 4 O -0.409 6.409 5 C -0.045 4.045 6 C -0.737 4.737 7 S 2.685 3.315 8 O -0.977 6.977 9 O -0.980 6.980 10 N -0.866 5.866 11 C 0.126 3.874 12 C -0.591 4.591 13 H 0.088 0.912 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.794 3.206 17 H -0.188 1.188 18 H -0.198 1.198 19 H -0.207 1.207 20 C -0.138 4.138 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.193 4.193 24 H 0.092 0.908 25 H 0.156 0.844 26 H 0.069 0.931 27 H 0.188 0.812 28 H 0.193 0.807 29 H 0.249 0.751 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.163 -2.329 -16.411 18.476 hybrid contribution 0.168 -0.521 1.206 1.324 sum -7.995 -2.850 -15.205 17.413 Atomic orbital electron populations 1.23642 0.74560 1.06187 1.02445 1.86437 1.25230 1.31502 1.82823 1.24090 0.92603 0.82090 0.72372 1.90635 1.67371 1.37199 1.45728 1.21074 0.85896 0.98637 0.98914 1.30683 1.15681 1.13655 1.13706 1.05206 0.74135 0.74686 0.77459 1.93524 1.34175 1.83269 1.86737 1.93540 1.84447 1.35514 1.84528 1.55319 1.20683 1.61700 1.48938 1.18813 0.75186 0.95838 0.97560 1.21633 0.94994 1.39523 1.02978 0.91207 1.25834 0.96097 0.95310 1.01643 1.70030 1.02713 1.44345 1.39100 0.85327 0.78475 0.78095 0.78678 1.18848 1.19799 1.20695 1.22622 1.03221 0.98632 0.89342 1.22614 1.02216 0.93621 0.97635 1.22371 1.00026 1.00326 0.92681 1.22821 1.02187 0.92067 1.02216 0.90792 0.84385 0.93054 0.81215 0.80686 0.75071 0.95409 0.97244 0.92128 0.86920 0.89012 0.91674 0.87756 0.90157 0.89527 0.90515 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.56 113.37 1.20 1.73 16 2 O -0.34 -9.32 10.08 -50.48 -0.51 -9.82 16 3 C 0.45 13.72 4.55 71.24 0.32 14.04 16 4 O -0.52 -18.81 14.96 21.96 0.33 -18.48 16 5 C -0.04 -1.12 0.63 -52.21 -0.03 -1.15 16 6 C -0.61 -16.50 4.66 71.98 0.34 -16.16 16 7 S 2.59 99.40 4.79 -56.49 -0.27 99.13 16 8 O -0.99 -40.19 16.63 -126.45 -2.10 -42.30 16 9 O -0.99 -45.43 15.44 -127.65 -1.97 -47.40 16 10 N -1.11 -45.52 5.88 -190.79 -1.12 -46.64 16 11 C 0.25 12.30 5.88 85.63 0.50 12.81 16 12 C -0.55 -29.42 9.27 25.60 0.24 -29.19 16 13 H 0.07 3.57 7.65 -2.91 -0.02 3.55 16 14 C 0.01 0.61 5.46 84.66 0.46 1.08 16 15 N -0.92 -51.75 13.29 21.45 0.28 -51.46 16 16 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 C -0.10 -1.76 5.90 31.69 0.19 -1.57 16 21 C -0.12 -1.97 6.91 31.91 0.22 -1.74 16 22 C -0.12 -2.33 6.83 31.67 0.22 -2.11 16 23 C -0.16 -4.43 5.34 31.32 0.17 -4.26 16 24 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 25 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.33 8.13 -2.39 -0.02 1.32 16 27 H 0.17 4.12 8.14 -2.39 -0.02 4.10 16 28 H 0.18 3.70 8.14 -2.39 -0.02 3.68 16 29 H 0.41 15.91 8.50 -96.75 -0.82 15.09 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.01 0.52 7.69 -2.38 -0.02 0.51 16 32 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.11 1.56 7.85 -2.39 -0.02 1.54 16 34 H 0.09 1.41 7.71 -2.38 -0.02 1.40 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 2.48 6.40 -2.38 -0.02 2.47 16 40 H 0.08 2.57 6.10 -2.39 -0.01 2.56 16 Total: -1.00 -73.28 339.52 0.71 -72.57 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.23 Total: 27.12 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 3.82 Total: -26.53 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -0.84 Total: -98.10 kcal Atomic # 8 Polarization: -113.74 SS G_CDS: -4.25 Total: -117.99 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 99.40 SS G_CDS: -0.27 Total: 99.13 kcal Total: -73.28 0.71 -72.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349500044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.065 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds