Wall clock time and date at job start Fri Apr 10 2020 14:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34708 * 116.99901 * 2 1 4 4 O 1.21468 * 120.00029 * 359.97438 * 3 2 1 5 5 C 1.47742 * 120.00166 * 179.97438 * 3 2 1 6 6 C 1.39755 * 120.07791 * 359.97438 * 5 3 2 7 7 C 1.38041 * 120.13992 * 180.02562 * 6 5 3 8 8 C 1.38114 * 120.30324 * 359.71563 * 7 6 5 9 9 C 1.39671 * 120.14936 * 0.56380 * 8 7 6 10 10 C 1.47859 * 120.06606 * 179.71826 * 9 8 7 11 11 O 1.21559 * 119.99853 * 187.77746 * 10 9 8 12 12 N 1.34775 * 120.00378 * 7.77346 * 10 9 8 13 13 C 1.47586 * 134.49621 * 177.22624 * 12 10 9 14 14 C 1.53942 * 86.11664 * 204.65826 * 13 12 10 15 15 O 1.42901 * 113.74388 * 90.73972 * 14 13 12 16 16 C 1.50703 * 113.73719 * 221.93896 * 14 13 12 17 17 H 1.08001 * 120.00337 * 358.07723 * 16 14 13 18 18 C 1.37880 * 119.99691 * 178.07446 * 16 14 13 19 19 N 1.31514 * 120.00053 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99972 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46937 * 59.99794 * 20 18 16 22 22 H 1.48497 * 109.47153 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46796 * 300.00073 * 20 18 16 24 24 C 1.47930 * 134.49968 * 357.24913 * 12 10 9 25 25 C 1.39321 * 119.86066 * 359.44152 * 9 8 7 26 26 H 1.09004 * 109.47059 * 60.00343 * 1 2 3 27 27 H 1.09004 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47190 * 300.00010 * 1 2 3 29 29 H 1.07996 * 119.93102 * 0.04443 * 6 5 3 30 30 H 1.08001 * 119.85064 * 180.02562 * 7 6 5 31 31 H 1.07999 * 119.92154 * 180.29992 * 8 7 6 32 32 H 1.08999 * 113.76558 * 90.35230 * 13 12 10 33 33 H 1.09004 * 113.86866 * 318.97435 * 13 12 10 34 34 H 0.96703 * 113.99998 * 181.92283 * 15 14 13 35 35 H 0.96997 * 120.00152 * 179.97438 * 19 18 16 36 36 H 1.08999 * 113.86547 * 41.08464 * 24 12 10 37 37 H 1.09000 * 113.76937 * 269.58629 * 24 12 10 38 38 H 1.07998 * 120.14864 * 180.29852 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2777 0.0006 6 6 4.3017 0.1067 0.0017 7 6 5.6803 0.1775 0.0027 8 6 6.3151 1.4041 -0.0032 9 6 5.5649 2.5822 0.0016 10 6 6.2464 3.8944 0.0015 11 8 5.6014 4.9142 0.1481 12 7 7.5828 3.9597 -0.1609 13 6 8.5597 5.0612 -0.2629 14 6 9.4453 4.0648 -1.0328 15 8 9.2402 4.0861 -2.4469 16 6 10.9015 4.1255 -0.6494 17 1 11.2380 4.8463 0.0810 18 6 11.8041 3.2606 -1.2311 19 7 11.3942 2.3825 -2.1202 20 14 13.6090 3.3353 -0.7554 21 1 13.7485 3.0742 0.6998 22 1 14.3647 2.3092 -1.5177 23 1 14.1485 4.6825 -1.0705 24 6 8.6595 2.9562 -0.3091 25 6 4.1731 2.5184 0.0006 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8116 -0.8557 0.0013 30 1 6.2652 -0.7304 0.0031 31 1 7.3940 1.4523 -0.0072 32 1 8.9762 5.3692 0.6961 33 1 8.2160 5.9011 -0.8667 34 1 9.7734 3.4411 -2.9314 35 1 12.0292 1.7743 -2.5297 36 1 8.3939 2.1158 -0.9504 37 1 9.1053 2.6473 0.6364 38 1 3.5885 3.4265 -0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352191238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:24 Heat of formation + Delta-G solvation = -112.737920 kcal Electronic energy + Delta-G solvation = -24343.497285 eV Core-core repulsion = 20538.248834 eV Total energy + Delta-G solvation = -3805.248452 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88779 -41.35546 -39.80150 -38.75346 -37.57852 -35.87773 -34.13251 -33.12672 -32.27184 -30.29780 -28.74182 -27.29517 -27.24744 -25.20837 -24.32938 -22.38957 -21.67451 -20.54432 -19.43313 -18.86329 -18.29465 -17.95150 -17.47358 -17.22432 -16.89399 -16.68582 -16.43033 -15.98111 -15.63351 -15.14954 -14.94456 -14.71749 -14.56983 -14.39270 -14.13030 -13.85887 -13.48714 -13.39319 -13.25716 -13.10478 -12.75966 -12.66006 -12.45547 -12.21896 -12.16616 -11.87215 -11.76362 -11.43741 -11.04985 -10.63199 -10.29550 -10.26140 -10.16467 -9.61634 -8.24554 -6.40812 -0.56599 -0.17001 1.24078 1.48287 1.50464 1.53945 1.59855 1.82842 1.86448 2.43038 2.70060 2.97555 3.27779 3.53370 3.71460 3.77844 3.91866 4.03555 4.10485 4.22026 4.29654 4.32778 4.36001 4.50459 4.57053 4.70104 4.74996 4.76628 4.82124 4.93270 5.06880 5.09009 5.19947 5.22569 5.26682 5.63462 5.74834 5.94134 6.55108 6.64093 6.71255 7.00679 7.32105 7.46291 8.81399 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.003151 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.915505 B = 8884.227904 C = 9495.139078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.516 3.484 4 O -0.539 6.539 5 C -0.148 4.148 6 C -0.021 4.021 7 C -0.123 4.123 8 C -0.064 4.064 9 C -0.152 4.152 10 C 0.562 3.438 11 O -0.598 6.598 12 N -0.627 5.627 13 C 0.110 3.890 14 C 0.222 3.778 15 O -0.586 6.586 16 C -0.557 4.557 17 H 0.071 0.929 18 C 0.038 3.962 19 N -0.912 5.912 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.279 1.279 24 C 0.083 3.917 25 C -0.015 4.015 26 H 0.061 0.939 27 H 0.142 0.858 28 H 0.062 0.938 29 H 0.180 0.820 30 H 0.181 0.819 31 H 0.155 0.845 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.389 0.611 35 H 0.277 0.723 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.451 -13.081 4.517 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.362 3.638 4 O -0.430 6.430 5 C -0.149 4.149 6 C -0.039 4.039 7 C -0.140 4.140 8 C -0.083 4.083 9 C -0.155 4.155 10 C 0.354 3.646 11 O -0.482 6.482 12 N -0.358 5.358 13 C -0.012 4.012 14 C 0.180 3.820 15 O -0.398 6.398 16 C -0.595 4.595 17 H 0.089 0.911 18 C -0.164 4.164 19 N -0.552 5.552 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.205 1.205 24 C -0.038 4.038 25 C -0.035 4.035 26 H 0.080 0.920 27 H 0.160 0.840 28 H 0.081 0.919 29 H 0.197 0.803 30 H 0.199 0.801 31 H 0.172 0.828 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.243 0.757 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.565 -11.970 4.642 17.964 hybrid contribution 0.934 0.384 -0.124 1.017 sum -11.631 -11.586 4.518 17.027 Atomic orbital electron populations 1.23651 0.73974 1.06240 1.02620 1.86509 1.25403 1.30678 1.83716 1.21179 0.88991 0.81769 0.71873 1.90844 1.67417 1.37376 1.47370 1.19012 0.89456 0.94696 1.11741 1.22041 0.93908 0.98142 0.89775 1.21617 0.94455 0.98287 0.99673 1.22635 1.02476 0.91810 0.91335 1.19708 0.93645 0.93133 1.09009 1.18385 0.80888 0.89193 0.76158 1.90691 1.65580 1.37948 1.53983 1.50147 1.03897 1.12902 1.68878 1.23545 0.85542 0.92056 1.00038 1.20090 0.92096 0.90255 0.79521 1.86071 1.69675 1.64359 1.19707 1.21648 0.92530 1.19809 1.25466 0.91070 1.25670 1.03028 0.93688 0.93972 1.69436 1.36968 1.20825 1.27956 0.85491 0.79129 0.77623 0.78672 1.19216 1.20773 1.20477 1.24484 0.83307 0.94740 1.01269 1.21156 0.93005 0.97701 0.91610 0.92033 0.84040 0.91914 0.80281 0.80138 0.82783 0.87614 0.92307 0.75703 0.91357 0.89501 0.87824 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.35 -6.69 9.81 -56.18 -0.55 -7.24 16 3 C 0.52 13.64 7.90 70.34 0.56 14.20 16 4 O -0.54 -17.92 16.13 19.94 0.32 -17.60 16 5 C -0.15 -3.89 5.87 -20.13 -0.12 -4.00 16 6 C -0.02 -0.38 9.61 22.59 0.22 -0.17 16 7 C -0.12 -2.31 10.02 22.19 0.22 -2.09 16 8 C -0.06 -1.75 9.12 22.59 0.21 -1.55 16 9 C -0.15 -5.28 5.87 -20.12 -0.12 -5.40 16 10 C 0.56 24.13 7.99 86.79 0.69 24.82 16 11 O -0.60 -29.70 17.10 -3.90 -0.07 -29.76 16 12 N -0.63 -26.18 3.61 -842.70 -3.05 -29.23 16 13 C 0.11 4.75 8.23 86.48 0.71 5.46 16 14 C 0.22 10.13 1.40 -10.88 -0.02 10.12 16 15 O -0.59 -29.40 13.49 -148.98 -2.01 -31.41 16 16 C -0.56 -26.36 8.61 25.60 0.22 -26.14 16 17 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 18 C 0.04 1.75 5.39 84.66 0.46 2.21 16 19 N -0.91 -42.98 11.20 21.45 0.24 -42.74 16 20 Si 0.97 37.50 29.54 68.60 2.03 39.52 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 24 C 0.08 3.26 5.95 86.42 0.51 3.77 16 25 C -0.02 -0.51 9.14 22.80 0.21 -0.30 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.18 1.99 7.60 -2.91 -0.02 1.97 16 30 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.16 4.22 3.76 -2.91 -0.01 4.21 16 32 H 0.11 4.11 8.09 -2.39 -0.02 4.09 16 33 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.39 19.48 6.60 -74.06 -0.49 18.99 16 35 H 0.28 12.41 8.31 -92.71 -0.77 11.64 16 36 H 0.09 3.24 6.27 -2.39 -0.01 3.23 16 37 H 0.10 3.71 8.09 -2.39 -0.02 3.69 16 38 H 0.12 4.63 7.25 -2.91 -0.02 4.61 16 Total: -1.00 -65.53 332.25 2.50 -63.03 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.63 Total: 32.93 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 4.95 Total: 22.49 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -2.81 Total: -71.97 kcal Atomic # 8 Polarization: -83.70 SS G_CDS: -2.31 Total: -86.01 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.52 kcal Total: -65.53 2.50 -63.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352191238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.706 kcal (2) G-P(sol) polarization free energy of solvation -65.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds