Wall clock time and date at job start Fri Apr 10 2020 14:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34693 * 117.00286 * 2 1 4 4 O 1.21439 * 119.99672 * 0.02562 * 3 2 1 5 5 C 1.47926 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.39596 * 120.00155 * 180.02562 * 5 3 2 7 7 C 1.37822 * 119.99184 * 180.02562 * 6 5 3 8 8 C 1.39553 * 120.00352 * 359.97438 * 7 6 5 9 9 C 1.48047 * 119.99323 * 180.02562 * 8 7 6 10 10 O 1.21525 * 119.99790 * 171.43806 * 9 8 7 11 11 N 1.34773 * 119.99909 * 351.43826 * 9 8 7 12 12 C 1.47580 * 134.49279 * 181.72691 * 11 9 8 13 13 C 1.53939 * 86.11851 * 155.36578 * 12 11 9 14 14 O 1.42905 * 113.74107 * 269.15737 * 13 12 11 15 15 C 1.50699 * 113.74483 * 137.95838 * 13 12 11 16 16 H 1.07996 * 119.99886 * 17.14058 * 15 13 12 17 17 C 1.37883 * 120.00064 * 197.14515 * 15 13 12 18 18 N 1.31506 * 119.99776 * 191.76456 * 17 15 13 19 19 Si 1.86803 * 119.99636 * 11.76863 * 17 15 13 20 20 H 1.48506 * 109.46738 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47082 * 299.99840 * 19 17 15 22 22 H 1.48499 * 109.47356 * 59.99971 * 19 17 15 23 23 C 1.47812 * 134.45967 * 1.60705 * 11 9 8 24 24 C 1.39553 * 120.01187 * 0.29469 * 8 7 6 25 25 C 1.37820 * 120.00463 * 359.44847 * 24 8 7 26 26 H 1.09006 * 109.46763 * 299.99969 * 1 2 3 27 27 H 1.09006 * 109.47459 * 59.99247 * 1 2 3 28 28 H 1.08999 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00554 * 0.02562 * 6 5 3 30 30 H 1.07998 * 119.99729 * 180.02562 * 7 6 5 31 31 H 1.09007 * 113.76922 * 41.06280 * 12 11 9 32 32 H 1.09001 * 113.77342 * 269.67102 * 12 11 9 33 33 H 0.96700 * 113.99952 * 177.01424 * 14 13 12 34 34 H 0.96994 * 120.00464 * 354.87568 * 18 17 15 35 35 H 1.08996 * 113.77263 * 90.37067 * 23 11 9 36 36 H 1.09001 * 113.83083 * 318.91371 * 23 11 9 37 37 H 1.08000 * 119.99781 * 179.70829 * 24 8 7 38 38 H 1.07995 * 120.00221 * 180.27624 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4021 2.2186 0.0005 5 6 3.5408 1.2775 -0.0006 6 6 4.1746 2.5212 0.0000 7 6 5.5510 2.5931 -0.0011 8 6 6.3108 1.4226 -0.0022 9 6 7.7893 1.5000 -0.0028 10 8 8.4505 0.4924 0.1530 11 7 8.4018 2.6879 -0.1760 12 6 9.8093 3.1230 -0.2627 13 6 9.2787 4.3270 -1.0618 14 8 9.2387 4.1080 -2.4735 15 6 9.9258 5.6358 -0.6885 16 1 10.8571 5.6411 -0.1418 17 6 9.3288 6.8264 -1.0449 18 7 9.9932 7.9554 -0.9298 19 14 7.5761 6.8356 -1.6912 20 1 7.1698 8.2302 -2.0001 21 1 7.4990 6.0123 -2.9246 22 1 6.6660 6.2719 -0.6620 23 6 7.9327 4.0778 -0.3576 24 6 5.6774 0.1791 -0.0084 25 6 4.3011 0.1067 -0.0020 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5866 3.4271 0.0012 30 1 6.0414 3.5553 -0.0003 31 1 10.4412 2.4528 -0.8456 32 1 10.2461 3.3920 0.6990 33 1 8.8636 4.8446 -2.9752 34 1 10.8747 7.9604 -0.5254 35 1 7.8169 4.6281 0.5761 36 1 7.0688 4.1686 -1.0161 37 1 6.2657 -0.7266 -0.0140 38 1 3.8109 -0.8556 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352196783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:26 Heat of formation + Delta-G solvation = -85.511547 kcal Electronic energy + Delta-G solvation = -24512.161491 eV Core-core repulsion = 20708.093663 eV Total energy + Delta-G solvation = -3804.067828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88400 -40.20253 -38.72711 -37.45274 -36.66431 -34.40306 -32.70369 -32.06644 -31.22478 -29.05620 -28.01047 -26.12268 -25.46237 -24.17556 -22.70650 -21.45179 -20.17206 -19.28242 -18.26154 -18.05668 -17.44484 -16.99964 -16.64560 -16.18985 -15.65885 -15.20895 -14.86896 -14.60080 -14.34306 -14.02592 -13.76204 -13.72105 -13.58222 -13.09899 -12.90460 -12.77694 -12.53874 -12.42912 -12.16129 -12.03272 -11.47785 -11.13760 -11.13088 -10.87717 -10.78913 -10.52267 -10.13066 -9.66755 -9.50151 -9.26553 -9.23930 -9.07925 -8.58775 -8.16545 -6.79951 -4.55367 0.20008 1.14640 2.09153 2.34921 3.01427 3.04365 3.07727 3.09473 3.32105 3.77855 4.10679 4.33116 4.52901 4.62814 4.71984 4.77277 4.78565 4.85518 5.07452 5.10373 5.13654 5.19526 5.36557 5.44532 5.73785 5.77328 5.84726 5.91540 5.97794 6.06677 6.11979 6.14154 6.20189 6.34279 6.56283 6.60828 7.42617 7.43566 8.00709 8.06827 8.38905 8.49397 8.61917 9.20920 10.56650 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.003977 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.788414 B = 7038.467856 C = 8277.594828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.510 3.490 4 O -0.503 6.503 5 C -0.114 4.114 6 C -0.061 4.061 7 C -0.115 4.115 8 C -0.081 4.081 9 C 0.567 3.433 10 O -0.550 6.550 11 N -0.623 5.623 12 C 0.131 3.869 13 C 0.200 3.800 14 O -0.566 6.566 15 C -0.617 4.617 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.886 5.886 19 Si 1.037 2.963 20 H -0.276 1.276 21 H -0.278 1.278 22 H -0.273 1.273 23 C 0.046 3.954 24 C -0.079 4.079 25 C -0.071 4.071 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.368 0.632 34 H 0.275 0.725 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.741 -12.256 1.914 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.355 3.645 4 O -0.391 6.391 5 C -0.115 4.115 6 C -0.079 4.079 7 C -0.133 4.133 8 C -0.084 4.084 9 C 0.357 3.643 10 O -0.430 6.430 11 N -0.355 5.355 12 C 0.009 3.991 13 C 0.159 3.841 14 O -0.374 6.374 15 C -0.655 4.655 16 H 0.090 0.910 17 C -0.173 4.173 18 N -0.518 5.518 19 Si 0.864 3.136 20 H -0.201 1.201 21 H -0.205 1.205 22 H -0.199 1.199 23 C -0.076 4.076 24 C -0.098 4.098 25 C -0.090 4.090 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.162 0.838 30 H 0.171 0.829 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.218 0.782 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.163 0.837 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.605 -12.233 1.584 20.685 hybrid contribution 0.624 -0.332 0.565 0.905 sum -15.980 -12.566 2.149 20.442 Atomic orbital electron populations 1.23303 0.75812 1.03845 1.02751 1.86540 1.23681 1.32581 1.84298 1.21280 0.89103 0.81481 0.72671 1.90837 1.66723 1.36016 1.45542 1.19231 0.88872 0.95201 1.08206 1.21257 0.94321 0.96919 0.95393 1.22132 0.93542 0.99760 0.97838 1.20358 0.93672 0.94302 1.00080 1.17896 0.86708 0.82513 0.77208 1.90729 1.66341 1.34451 1.51462 1.50066 1.10701 1.05809 1.68946 1.23294 0.82664 0.93569 0.99543 1.20409 0.89581 0.94321 0.79763 1.86382 1.85971 1.46324 1.18741 1.22201 1.11105 0.89749 1.42412 0.91017 1.25827 1.04458 0.92161 0.94819 1.70792 1.14635 1.28402 1.37970 0.84198 0.75291 0.77229 0.76854 1.20122 1.20456 1.19850 1.24973 1.01536 0.79362 1.01767 1.21277 0.93926 0.97634 0.96929 1.21395 0.93388 0.98031 0.96142 0.91732 0.91718 0.87875 0.83839 0.82862 0.90482 0.88697 0.78160 0.91449 0.88026 0.90737 0.83730 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.57 9.81 -40.48 -0.40 -3.97 16 3 C 0.51 6.24 7.90 34.70 0.27 6.52 16 4 O -0.50 -7.23 16.12 -19.22 -0.31 -7.54 16 5 C -0.11 -1.40 5.88 -104.92 -0.62 -2.01 16 6 C -0.06 -0.78 9.58 -39.23 -0.38 -1.16 16 7 C -0.11 -1.64 9.07 -39.24 -0.36 -2.00 16 8 C -0.08 -1.27 5.88 -104.89 -0.62 -1.88 16 9 C 0.57 10.77 7.99 -12.24 -0.10 10.67 16 10 O -0.55 -11.72 17.10 5.34 0.09 -11.62 16 11 N -0.62 -12.05 3.61 -179.16 -0.65 -12.70 16 12 C 0.13 2.64 8.23 -2.97 -0.02 2.61 16 13 C 0.20 4.34 1.07 -90.85 -0.10 4.25 16 14 O -0.57 -12.54 13.46 -35.23 -0.47 -13.02 16 15 C -0.62 -15.25 9.04 -34.44 -0.31 -15.57 16 16 H 0.07 1.91 8.05 -52.49 -0.42 1.49 16 17 C 0.04 0.90 5.44 -17.82 -0.10 0.80 16 18 N -0.89 -24.35 13.70 55.43 0.76 -23.60 16 19 Si 1.04 21.15 24.65 -169.99 -4.19 16.96 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.13 5.75 56.52 0.32 -4.80 16 22 H -0.27 -4.92 6.39 56.52 0.36 -4.56 16 23 C 0.05 0.87 3.25 -2.84 -0.01 0.86 16 24 C -0.08 -1.04 9.58 -39.24 -0.38 -1.41 16 25 C -0.07 -0.80 9.60 -39.23 -0.38 -1.18 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.14 1.71 7.64 -52.49 -0.40 1.31 16 30 H 0.15 2.23 3.88 -52.49 -0.20 2.02 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.10 1.80 8.09 -51.93 -0.42 1.38 16 33 H 0.37 7.58 5.85 45.56 0.27 7.84 16 34 H 0.27 7.56 8.72 -40.82 -0.36 7.20 16 35 H 0.10 1.83 8.08 -51.93 -0.42 1.41 16 36 H 0.07 1.30 5.08 -51.93 -0.26 1.04 16 37 H 0.14 1.81 7.66 -52.49 -0.40 1.40 16 38 H 0.14 1.24 7.60 -52.49 -0.40 0.84 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -30.56 323.98 -5.92 -36.49 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -3.62 Total: 12.30 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.01 Total: 1.81 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.11 Total: -36.30 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.09 Total: -36.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.19 Total: 16.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.56 -5.92 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352196783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.025 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds