Wall clock time and date at job start Fri Apr 10 2020 14:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34693 * 117.00286 * 2 1 4 4 O 1.21439 * 119.99672 * 0.02562 * 3 2 1 5 5 C 1.47926 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.39596 * 120.00155 * 180.02562 * 5 3 2 7 7 C 1.37822 * 119.99184 * 180.02562 * 6 5 3 8 8 C 1.39553 * 120.00352 * 359.97438 * 7 6 5 9 9 C 1.48047 * 119.99323 * 180.02562 * 8 7 6 10 10 O 1.21525 * 119.99790 * 171.43806 * 9 8 7 11 11 N 1.34773 * 119.99909 * 351.43826 * 9 8 7 12 12 C 1.47580 * 134.49279 * 181.72691 * 11 9 8 13 13 C 1.53939 * 86.11851 * 155.36578 * 12 11 9 14 14 O 1.42905 * 113.74107 * 269.15737 * 13 12 11 15 15 C 1.50699 * 113.74483 * 137.95838 * 13 12 11 16 16 H 1.07996 * 119.99886 * 17.14058 * 15 13 12 17 17 C 1.37883 * 120.00064 * 197.14515 * 15 13 12 18 18 N 1.31506 * 119.99776 * 191.76456 * 17 15 13 19 19 Si 1.86803 * 119.99636 * 11.76863 * 17 15 13 20 20 H 1.48506 * 109.46738 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47082 * 299.99840 * 19 17 15 22 22 H 1.48499 * 109.47356 * 59.99971 * 19 17 15 23 23 C 1.47812 * 134.45967 * 1.60705 * 11 9 8 24 24 C 1.39553 * 120.01187 * 0.29469 * 8 7 6 25 25 C 1.37820 * 120.00463 * 359.44847 * 24 8 7 26 26 H 1.09006 * 109.46763 * 299.99969 * 1 2 3 27 27 H 1.09006 * 109.47459 * 59.99247 * 1 2 3 28 28 H 1.08999 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00554 * 0.02562 * 6 5 3 30 30 H 1.07998 * 119.99729 * 180.02562 * 7 6 5 31 31 H 1.09007 * 113.76922 * 41.06280 * 12 11 9 32 32 H 1.09001 * 113.77342 * 269.67102 * 12 11 9 33 33 H 0.96700 * 113.99952 * 177.01424 * 14 13 12 34 34 H 0.96994 * 120.00464 * 354.87568 * 18 17 15 35 35 H 1.08996 * 113.77263 * 90.37067 * 23 11 9 36 36 H 1.09001 * 113.83083 * 318.91371 * 23 11 9 37 37 H 1.08000 * 119.99781 * 179.70829 * 24 8 7 38 38 H 1.07995 * 120.00221 * 180.27624 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4021 2.2186 0.0005 5 6 3.5408 1.2775 -0.0006 6 6 4.1746 2.5212 0.0000 7 6 5.5510 2.5931 -0.0011 8 6 6.3108 1.4226 -0.0022 9 6 7.7893 1.5000 -0.0028 10 8 8.4505 0.4924 0.1530 11 7 8.4018 2.6879 -0.1760 12 6 9.8093 3.1230 -0.2627 13 6 9.2787 4.3270 -1.0618 14 8 9.2387 4.1080 -2.4735 15 6 9.9258 5.6358 -0.6885 16 1 10.8571 5.6411 -0.1418 17 6 9.3288 6.8264 -1.0449 18 7 9.9932 7.9554 -0.9298 19 14 7.5761 6.8356 -1.6912 20 1 7.1698 8.2302 -2.0001 21 1 7.4990 6.0123 -2.9246 22 1 6.6660 6.2719 -0.6620 23 6 7.9327 4.0778 -0.3576 24 6 5.6774 0.1791 -0.0084 25 6 4.3011 0.1067 -0.0020 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5866 3.4271 0.0012 30 1 6.0414 3.5553 -0.0003 31 1 10.4412 2.4528 -0.8456 32 1 10.2461 3.3920 0.6990 33 1 8.8636 4.8446 -2.9752 34 1 10.8747 7.9604 -0.5254 35 1 7.8169 4.6281 0.5761 36 1 7.0688 4.1686 -1.0161 37 1 6.2657 -0.7266 -0.0140 38 1 3.8109 -0.8556 -0.0023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352196783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:26 Heat of formation + Delta-G solvation = -107.754946 kcal Electronic energy + Delta-G solvation = -24513.126037 eV Core-core repulsion = 20708.093663 eV Total energy + Delta-G solvation = -3805.032374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.94803 -41.47948 -39.97002 -38.86344 -37.54746 -36.09951 -34.65155 -33.17644 -32.22830 -30.56269 -28.79998 -27.60509 -27.05908 -25.41723 -23.70895 -22.55330 -21.63909 -20.71443 -19.94992 -19.20971 -18.63371 -18.05031 -17.72168 -17.44550 -17.16686 -16.74621 -15.95498 -15.88797 -15.63133 -15.23578 -15.07185 -14.84301 -14.63653 -14.45641 -14.30806 -14.17263 -13.90676 -13.55401 -13.49752 -13.07226 -12.92341 -12.43923 -12.22497 -12.17898 -11.84305 -11.81306 -11.76039 -11.33799 -11.15396 -10.88705 -10.37048 -10.32572 -10.19731 -9.76518 -8.82269 -6.59935 -0.84500 0.17645 1.05435 1.42032 1.48117 1.56436 1.58002 1.75215 1.83044 2.43041 2.66704 2.90833 3.09367 3.40647 3.57454 3.63697 3.73075 3.78510 4.08948 4.14329 4.23265 4.30932 4.31209 4.35428 4.45434 4.53063 4.58741 4.67578 4.73949 4.86684 4.94620 4.96828 5.05174 5.19822 5.24164 5.56164 5.58239 5.91932 6.40538 6.55808 6.57242 6.90602 6.93350 7.26786 8.53359 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.003977 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.788414 B = 7038.467856 C = 8277.594828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.514 3.486 4 O -0.527 6.527 5 C -0.112 4.112 6 C -0.060 4.060 7 C -0.115 4.115 8 C -0.102 4.102 9 C 0.565 3.435 10 O -0.581 6.581 11 N -0.625 5.625 12 C 0.126 3.874 13 C 0.191 3.809 14 O -0.572 6.572 15 C -0.619 4.619 16 H 0.035 0.965 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 1.062 2.938 20 H -0.289 1.289 21 H -0.245 1.245 22 H -0.229 1.229 23 C 0.059 3.941 24 C -0.077 4.077 25 C -0.053 4.053 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.375 0.625 34 H 0.258 0.742 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.293 -14.095 1.642 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.360 3.640 4 O -0.418 6.418 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.133 4.133 8 C -0.105 4.105 9 C 0.357 3.643 10 O -0.463 6.463 11 N -0.357 5.357 12 C 0.004 3.996 13 C 0.150 3.850 14 O -0.382 6.382 15 C -0.657 4.657 16 H 0.053 0.947 17 C -0.208 4.208 18 N -0.556 5.556 19 Si 0.881 3.119 20 H -0.215 1.215 21 H -0.170 1.170 22 H -0.153 1.153 23 C -0.063 4.063 24 C -0.096 4.096 25 C -0.071 4.071 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.226 0.774 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.167 0.833 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -20.154 -14.113 1.323 24.640 hybrid contribution 1.742 0.147 0.672 1.873 sum -18.412 -13.967 1.995 23.196 Atomic orbital electron populations 1.23640 0.73908 1.06094 1.02799 1.86527 1.25480 1.31213 1.83608 1.21226 0.88962 0.81758 0.72087 1.90833 1.67199 1.36966 1.46812 1.19391 0.89299 0.95379 1.07317 1.21351 0.93727 0.97790 0.94939 1.22019 0.93990 0.99068 0.98245 1.20181 0.91412 0.95931 1.02956 1.18444 0.88185 0.81618 0.76087 1.90703 1.67457 1.35258 1.52880 1.50010 1.10005 1.06351 1.69315 1.23263 0.83638 0.93131 0.99604 1.20377 0.91800 0.93011 0.79780 1.86367 1.86347 1.46579 1.18925 1.22287 1.09956 0.91822 1.41634 0.94702 1.27284 1.07854 0.91382 0.94286 1.70940 1.14409 1.29852 1.40379 0.83995 0.71271 0.77565 0.79062 1.21468 1.16991 1.15256 1.24843 1.00350 0.78962 1.02112 1.21381 0.94785 0.96900 0.96511 1.21623 0.92330 0.99047 0.94078 0.91701 0.91725 0.84581 0.82785 0.83103 0.91177 0.88162 0.77414 0.93229 0.87035 0.88390 0.83305 0.80827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.82 9.81 -56.03 -0.55 -6.37 16 3 C 0.51 10.93 7.90 70.39 0.56 11.49 16 4 O -0.53 -13.78 16.12 20.03 0.32 -13.45 16 5 C -0.11 -2.38 5.88 -20.06 -0.12 -2.49 16 6 C -0.06 -1.36 9.58 22.50 0.22 -1.14 16 7 C -0.12 -2.97 9.07 22.49 0.20 -2.76 16 8 C -0.10 -2.96 5.88 -20.04 -0.12 -3.08 16 9 C 0.56 20.81 7.99 86.85 0.69 21.50 16 10 O -0.58 -24.49 17.10 -3.80 -0.06 -24.56 16 11 N -0.62 -23.46 3.61 -842.87 -3.04 -26.50 16 12 C 0.13 5.09 8.23 86.48 0.71 5.80 16 13 C 0.19 8.17 1.07 -10.88 -0.01 8.16 16 14 O -0.57 -24.68 13.46 -148.98 -2.01 -26.68 16 15 C -0.62 -31.21 9.04 25.60 0.23 -30.98 16 16 H 0.03 1.96 8.05 -2.91 -0.02 1.93 16 17 C -0.01 -0.36 5.44 84.66 0.46 0.10 16 18 N -0.92 -52.25 13.70 21.45 0.29 -51.96 16 19 Si 1.06 40.42 24.65 68.60 1.69 42.11 16 20 H -0.29 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.25 -8.02 5.75 99.48 0.57 -7.45 16 22 H -0.23 -7.14 6.39 99.48 0.64 -6.50 16 23 C 0.06 2.10 3.25 86.44 0.28 2.38 16 24 C -0.08 -1.82 9.58 22.49 0.22 -1.60 16 25 C -0.05 -0.99 9.60 22.50 0.22 -0.77 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.15 3.15 7.64 -2.91 -0.02 3.13 16 30 H 0.15 3.88 3.88 -2.91 -0.01 3.87 16 31 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 32 H 0.10 3.88 8.09 -2.39 -0.02 3.86 16 33 H 0.37 14.66 5.85 -74.06 -0.43 14.23 16 34 H 0.26 14.98 8.72 -92.71 -0.81 14.17 16 35 H 0.11 3.75 8.08 -2.39 -0.02 3.73 16 36 H 0.10 3.04 5.08 -2.39 -0.01 3.03 16 37 H 0.15 3.38 7.66 -2.91 -0.02 3.36 16 38 H 0.17 2.18 7.60 -2.91 -0.02 2.16 16 Total: -1.00 -67.82 323.98 1.82 -66.00 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.44 Total: 33.31 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 4.74 Total: 8.10 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -2.75 Total: -78.46 kcal Atomic # 8 Polarization: -68.76 SS G_CDS: -2.30 Total: -71.06 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.69 Total: 42.11 kcal Total: -67.82 1.82 -66.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352196783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.757 kcal (2) G-P(sol) polarization free energy of solvation -67.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds