Wall clock time and date at job start Fri Apr 10 2020 14:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 116.99938 * 2 1 4 4 O 1.20831 * 120.00060 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00153 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47180 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47055 * 174.11736 * 6 5 3 8 8 C 1.46504 * 119.99933 * 86.72771 * 7 6 5 9 9 C 1.54269 * 110.02900 * 50.65345 * 8 7 6 10 10 C 1.54965 * 104.15559 * 217.13788 * 9 8 7 11 11 C 1.54890 * 102.78080 * 37.88794 * 10 9 8 12 12 C 1.53868 * 110.03154 * 293.43608 * 8 7 6 13 13 S 1.65599 * 120.00163 * 266.45553 * 7 6 5 14 14 O 1.42101 * 106.40355 * 203.54093 * 13 7 6 15 15 O 1.42096 * 106.40108 * 336.45876 * 13 7 6 16 16 C 1.76198 * 107.21978 * 89.99936 * 13 7 6 17 17 H 1.08007 * 120.00152 * 359.97438 * 16 13 7 18 18 C 1.37875 * 120.00144 * 179.97438 * 16 13 7 19 19 N 1.31511 * 119.99875 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00053 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47477 * 60.00122 * 20 18 16 22 22 H 1.48503 * 109.47381 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47130 * 300.00128 * 20 18 16 24 24 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47127 * 299.99558 * 1 2 3 26 26 H 1.09000 * 109.47548 * 59.99747 * 1 2 3 27 27 H 1.08997 * 109.46958 * 60.00152 * 5 3 2 28 28 H 1.09001 * 109.46860 * 299.99982 * 5 3 2 29 29 H 1.09001 * 109.47190 * 54.11989 * 6 5 3 30 30 H 1.09000 * 109.47014 * 294.11937 * 6 5 3 31 31 H 1.08995 * 110.01739 * 172.04048 * 8 7 6 32 32 H 1.09003 * 110.48563 * 335.78117 * 9 8 7 33 33 H 1.08994 * 110.48995 * 98.42430 * 9 8 7 34 34 H 1.08999 * 110.71983 * 279.57096 * 10 9 8 35 35 H 1.09009 * 110.92223 * 156.29515 * 10 9 8 36 36 H 1.09001 * 110.48695 * 203.40487 * 11 10 9 37 37 H 1.08995 * 110.60096 * 80.81952 * 11 10 9 38 38 H 1.09005 * 110.03386 * 238.56403 * 12 8 7 39 39 H 1.08998 * 110.03871 * 359.97438 * 12 8 7 40 40 H 0.97008 * 120.00083 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4561 2.8209 0.1399 8 6 6.3119 2.7509 -1.0472 9 6 5.8253 3.7583 -2.1094 10 6 6.0456 3.0246 -3.4565 11 6 5.6698 1.5613 -3.1151 12 6 6.2135 1.3547 -1.6863 13 16 6.1345 2.9959 1.6404 14 8 7.4133 3.5811 1.4369 15 8 5.1359 3.5783 2.4667 16 6 6.4231 1.3774 2.2743 17 1 6.1575 0.5116 1.6858 18 6 6.9879 1.2162 3.5217 19 7 7.3108 2.2704 4.2385 20 14 7.2945 -0.4997 4.1934 21 1 8.2156 -1.2295 3.2855 22 1 7.9049 -0.4010 5.5436 23 1 6.0063 -1.2327 4.2854 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 3.5258 3.2615 0.8316 30 1 3.7000 3.2094 -0.9391 31 1 7.3454 2.9651 -0.7752 32 1 4.7684 3.9832 -1.9661 33 1 6.4193 4.6713 -2.0698 34 1 7.0881 3.0933 -3.7671 35 1 5.3869 3.4224 -4.2287 36 1 6.1504 0.8721 -3.8095 37 1 4.5881 1.4285 -3.1346 38 1 7.1995 0.8916 -1.7253 39 1 5.5294 0.7289 -1.1130 40 1 7.7079 2.1569 5.1163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:48 Heat of formation + Delta-G solvation = -183.331382 kcal Electronic energy + Delta-G solvation = -24766.735911 eV Core-core repulsion = 21093.870249 eV Total energy + Delta-G solvation = -3672.865663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34334 -38.57621 -36.46159 -35.36113 -34.33925 -33.97446 -33.10008 -30.92753 -28.54647 -27.87693 -26.64529 -26.15361 -23.58121 -20.84045 -20.23176 -19.78443 -18.56320 -18.04261 -17.18344 -16.63558 -16.28672 -16.24447 -15.59293 -15.26279 -14.86498 -14.11242 -13.94381 -13.83274 -13.56656 -13.10142 -12.96540 -12.89940 -12.44551 -12.06667 -12.03948 -11.75464 -11.34459 -11.29835 -11.21365 -11.06373 -10.91328 -10.76907 -10.74350 -10.63127 -10.51322 -10.41627 -10.29698 -10.23494 -9.97350 -9.87359 -9.25443 -8.95218 -8.29646 -6.71306 -5.34425 2.19403 2.36840 2.84638 3.06966 3.11980 3.16925 4.03136 4.42109 4.62565 4.82852 4.88938 4.91840 5.08219 5.10464 5.15438 5.22737 5.31146 5.48750 5.55509 5.69383 5.71128 5.74659 5.80901 5.84826 5.92236 5.95166 6.05587 6.08267 6.23165 6.24357 6.40993 6.46544 6.48359 6.56000 6.57630 6.91292 7.30568 7.56500 7.88424 7.93446 8.86866 10.22429 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.007035 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.212906 B = 3978.910510 C = 5329.538583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.148 4.148 6 C 0.133 3.867 7 N -1.003 6.003 8 C 0.146 3.854 9 C -0.138 4.138 10 C -0.122 4.122 11 C -0.123 4.123 12 C -0.149 4.149 13 S 2.710 3.290 14 O -1.002 7.002 15 O -1.001 7.001 16 C -1.020 5.020 17 H 0.103 0.897 18 C 0.134 3.866 19 N -0.845 5.845 20 Si 0.918 3.082 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.264 1.264 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.961 -5.233 -12.646 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.187 4.187 6 C 0.007 3.993 7 N -0.835 5.835 8 C 0.039 3.961 9 C -0.177 4.177 10 C -0.160 4.160 11 C -0.161 4.161 12 C -0.188 4.188 13 S 2.811 3.189 14 O -0.993 6.993 15 O -0.992 6.992 16 C -1.154 5.154 17 H 0.121 0.879 18 C -0.084 4.084 19 N -0.474 5.474 20 Si 0.742 3.258 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.188 1.188 24 H 0.116 0.884 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.929 -3.969 -12.062 14.466 hybrid contribution -0.070 -1.623 0.395 1.672 sum -6.999 -5.592 -11.667 14.710 Atomic orbital electron populations 1.23221 0.76875 1.03357 1.02459 1.86533 1.23083 1.33919 1.84315 1.23902 0.92191 0.81115 0.71759 1.90656 1.67330 1.36242 1.45421 1.22346 0.86740 1.02450 1.07144 1.20912 0.80992 0.92717 1.04710 1.58107 1.11807 1.89747 1.23820 1.21442 0.95414 0.93938 0.85322 1.22805 1.02256 0.98532 0.94107 1.22461 1.01254 0.95415 0.96915 1.22341 1.00478 0.96614 0.96647 1.22856 1.02194 0.98011 0.95748 1.00686 0.72203 0.76402 0.69603 1.93349 1.41844 1.79379 1.84694 1.93360 1.61411 1.79426 1.64977 1.30590 1.55890 1.16565 1.12308 0.87887 1.24735 0.89751 0.99373 0.94556 1.69888 1.34301 1.30790 1.12469 0.86240 0.79502 0.81864 0.78220 1.18802 1.20140 1.18809 0.88395 0.91874 0.92118 0.86882 0.86162 0.88172 0.90063 0.87578 0.90592 0.91217 0.91440 0.91890 0.91959 0.92015 0.91101 0.90106 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.98 10.56 -39.25 -0.41 -5.40 16 3 C 0.47 7.28 7.96 36.01 0.29 7.56 16 4 O -0.51 -8.99 15.65 -18.75 -0.29 -9.28 16 5 C -0.15 -2.27 5.31 -27.88 -0.15 -2.41 16 6 C 0.13 2.33 4.73 -4.04 -0.02 2.31 16 7 N -1.00 -19.57 2.74 -106.12 -0.29 -19.86 16 8 C 0.15 2.42 3.34 -66.81 -0.22 2.20 16 9 C -0.14 -1.90 6.39 -25.03 -0.16 -2.06 16 10 C -0.12 -1.35 6.91 -24.70 -0.17 -1.52 16 11 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 12 C -0.15 -2.05 6.09 -25.62 -0.16 -2.20 16 13 S 2.71 70.61 4.98 -107.50 -0.54 70.07 16 14 O -1.00 -28.71 16.54 -57.17 -0.95 -29.65 16 15 O -1.00 -29.03 16.58 -57.17 -0.95 -29.98 16 16 C -1.02 -27.01 9.71 30.60 0.30 -26.72 16 17 H 0.10 2.43 7.65 -52.48 -0.40 2.03 16 18 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 19 N -0.84 -24.59 13.19 55.43 0.73 -23.86 16 20 Si 0.92 20.15 29.54 -169.99 -5.02 15.13 16 21 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.11 1.44 5.61 -51.93 -0.29 1.14 16 28 H 0.12 1.98 7.94 -51.93 -0.41 1.57 16 29 H 0.10 1.99 6.72 -51.93 -0.35 1.64 16 30 H 0.08 1.22 5.80 -51.93 -0.30 0.92 16 31 H 0.11 1.95 6.86 -51.93 -0.36 1.59 16 32 H 0.08 1.03 5.66 -51.93 -0.29 0.73 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.11 4.68 -51.93 -0.24 0.86 16 40 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -34.80 336.89 -7.72 -42.52 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.59 Total: 4.61 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 0.50 Total: -19.38 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.44 Total: -43.72 kcal Atomic # 8 Polarization: -71.71 SS G_CDS: -2.60 Total: -74.31 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 70.61 SS G_CDS: -0.54 Total: 70.07 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.80 -7.72 -42.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.807 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds