Wall clock time and date at job start Fri Apr 10 2020 14:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 116.99938 * 2 1 4 4 O 1.20831 * 120.00060 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00153 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47180 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47055 * 174.11736 * 6 5 3 8 8 C 1.46504 * 119.99933 * 86.72771 * 7 6 5 9 9 C 1.54269 * 110.02900 * 50.65345 * 8 7 6 10 10 C 1.54965 * 104.15559 * 217.13788 * 9 8 7 11 11 C 1.54890 * 102.78080 * 37.88794 * 10 9 8 12 12 C 1.53868 * 110.03154 * 293.43608 * 8 7 6 13 13 S 1.65599 * 120.00163 * 266.45553 * 7 6 5 14 14 O 1.42101 * 106.40355 * 203.54093 * 13 7 6 15 15 O 1.42096 * 106.40108 * 336.45876 * 13 7 6 16 16 C 1.76198 * 107.21978 * 89.99936 * 13 7 6 17 17 H 1.08007 * 120.00152 * 359.97438 * 16 13 7 18 18 C 1.37875 * 120.00144 * 179.97438 * 16 13 7 19 19 N 1.31511 * 119.99875 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00053 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47477 * 60.00122 * 20 18 16 22 22 H 1.48503 * 109.47381 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47130 * 300.00128 * 20 18 16 24 24 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47127 * 299.99558 * 1 2 3 26 26 H 1.09000 * 109.47548 * 59.99747 * 1 2 3 27 27 H 1.08997 * 109.46958 * 60.00152 * 5 3 2 28 28 H 1.09001 * 109.46860 * 299.99982 * 5 3 2 29 29 H 1.09001 * 109.47190 * 54.11989 * 6 5 3 30 30 H 1.09000 * 109.47014 * 294.11937 * 6 5 3 31 31 H 1.08995 * 110.01739 * 172.04048 * 8 7 6 32 32 H 1.09003 * 110.48563 * 335.78117 * 9 8 7 33 33 H 1.08994 * 110.48995 * 98.42430 * 9 8 7 34 34 H 1.08999 * 110.71983 * 279.57096 * 10 9 8 35 35 H 1.09009 * 110.92223 * 156.29515 * 10 9 8 36 36 H 1.09001 * 110.48695 * 203.40487 * 11 10 9 37 37 H 1.08995 * 110.60096 * 80.81952 * 11 10 9 38 38 H 1.09005 * 110.03386 * 238.56403 * 12 8 7 39 39 H 1.08998 * 110.03871 * 359.97438 * 12 8 7 40 40 H 0.97008 * 120.00083 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4561 2.8209 0.1399 8 6 6.3119 2.7509 -1.0472 9 6 5.8253 3.7583 -2.1094 10 6 6.0456 3.0246 -3.4565 11 6 5.6698 1.5613 -3.1151 12 6 6.2135 1.3547 -1.6863 13 16 6.1345 2.9959 1.6404 14 8 7.4133 3.5811 1.4369 15 8 5.1359 3.5783 2.4667 16 6 6.4231 1.3774 2.2743 17 1 6.1575 0.5116 1.6858 18 6 6.9879 1.2162 3.5217 19 7 7.3108 2.2704 4.2385 20 14 7.2945 -0.4997 4.1934 21 1 8.2156 -1.2295 3.2855 22 1 7.9049 -0.4010 5.5436 23 1 6.0063 -1.2327 4.2854 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 3.5258 3.2615 0.8316 30 1 3.7000 3.2094 -0.9391 31 1 7.3454 2.9651 -0.7752 32 1 4.7684 3.9832 -1.9661 33 1 6.4193 4.6713 -2.0698 34 1 7.0881 3.0933 -3.7671 35 1 5.3869 3.4224 -4.2287 36 1 6.1504 0.8721 -3.8095 37 1 4.5881 1.4285 -3.1346 38 1 7.1995 0.8916 -1.7253 39 1 5.5294 0.7289 -1.1130 40 1 7.7079 2.1569 5.1163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:47 Heat of formation + Delta-G solvation = -208.414043 kcal Electronic energy + Delta-G solvation = -24767.823577 eV Core-core repulsion = 21093.870249 eV Total energy + Delta-G solvation = -3673.953328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53452 -39.78549 -37.68837 -37.41744 -36.15872 -35.66726 -35.14933 -32.23361 -29.59507 -28.86728 -28.24474 -27.76848 -24.89946 -21.97830 -21.32251 -21.19482 -20.32199 -19.63277 -18.47758 -18.41702 -17.64707 -17.42956 -17.11750 -16.86916 -16.20661 -15.88390 -15.61397 -15.04569 -14.80941 -14.35336 -14.19169 -14.15923 -13.93872 -13.69487 -13.43622 -13.07894 -12.98582 -12.92350 -12.63924 -12.49984 -12.46288 -12.32716 -12.20464 -11.92029 -11.83214 -11.79572 -11.68837 -11.59593 -11.29350 -11.21927 -11.13354 -10.95645 -9.85443 -8.73372 -7.47312 0.26542 1.15223 1.34845 1.37195 1.49668 1.74422 2.21289 2.59478 2.77979 3.67364 3.72661 3.78112 3.84833 3.95755 4.02469 4.11200 4.32091 4.33204 4.36486 4.38400 4.51182 4.60726 4.70295 4.71932 4.75781 4.79014 4.86415 4.97976 5.00824 5.14292 5.19554 5.28216 5.31511 5.36662 5.48369 5.56472 5.58929 5.92378 6.00324 6.70829 6.79268 8.21951 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.007035 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.212906 B = 3978.910510 C = 5329.538583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.144 4.144 6 C 0.132 3.868 7 N -0.993 5.993 8 C 0.132 3.868 9 C -0.139 4.139 10 C -0.115 4.115 11 C -0.115 4.115 12 C -0.149 4.149 13 S 2.708 3.292 14 O -1.041 7.041 15 O -1.044 7.044 16 C -1.032 5.032 17 H 0.128 0.872 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.987 3.013 21 H -0.246 1.246 22 H -0.268 1.268 23 H -0.248 1.248 24 H 0.133 0.867 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.146 0.854 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -8.079 -14.863 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.182 4.182 6 C 0.006 3.994 7 N -0.829 5.829 8 C 0.026 3.974 9 C -0.178 4.178 10 C -0.152 4.152 11 C -0.153 4.153 12 C -0.188 4.188 13 S 2.811 3.189 14 O -1.031 7.031 15 O -1.034 7.034 16 C -1.166 5.166 17 H 0.146 0.854 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.805 3.195 21 H -0.170 1.170 22 H -0.193 1.193 23 H -0.171 1.171 24 H 0.151 0.849 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.785 -6.812 -14.296 17.646 hybrid contribution 0.133 -0.689 1.024 1.241 sum -7.652 -7.501 -13.272 17.058 Atomic orbital electron populations 1.23577 0.74769 1.05768 1.02581 1.86509 1.25102 1.32568 1.83714 1.23802 0.92113 0.81317 0.71145 1.90650 1.67872 1.37209 1.46817 1.22249 0.87137 1.00727 1.08128 1.20989 0.79172 0.94509 1.04737 1.57529 1.12943 1.89901 1.22540 1.21772 0.93600 0.97233 0.84773 1.22830 1.02085 0.97938 0.94951 1.22457 1.02316 0.95041 0.95423 1.22337 1.01297 0.96869 0.94779 1.22853 1.02800 0.95672 0.97471 1.00293 0.71286 0.76582 0.70691 1.93287 1.43781 1.80323 1.85727 1.93296 1.62207 1.80449 1.67457 1.30920 1.55513 1.17275 1.12890 0.85403 1.26027 0.89056 1.04225 0.94923 1.70006 1.35874 1.33679 1.13372 0.85208 0.80377 0.75919 0.78017 1.16991 1.19268 1.17132 0.84874 0.92527 0.91324 0.83663 0.87362 0.91338 0.87323 0.90338 0.90306 0.91826 0.90800 0.89710 0.89786 0.90818 0.90785 0.89976 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -9.17 10.56 -51.37 -0.54 -9.71 16 3 C 0.47 14.06 7.96 71.24 0.57 14.63 16 4 O -0.54 -18.58 15.65 21.95 0.34 -18.23 16 5 C -0.14 -4.22 5.31 29.85 0.16 -4.06 16 6 C 0.13 4.59 4.73 86.38 0.41 5.00 16 7 N -0.99 -39.37 2.74 -489.65 -1.34 -40.71 16 8 C 0.13 4.34 3.34 45.71 0.15 4.50 16 9 C -0.14 -3.65 6.39 31.70 0.20 -3.44 16 10 C -0.11 -2.15 6.91 31.91 0.22 -1.93 16 11 C -0.12 -2.08 6.83 31.67 0.22 -1.86 16 12 C -0.15 -3.75 6.09 31.32 0.19 -3.56 16 13 S 2.71 146.95 4.98 -56.49 -0.28 146.67 16 14 O -1.04 -62.73 16.54 -128.00 -2.12 -64.84 16 15 O -1.04 -63.79 16.58 -128.00 -2.12 -65.92 16 16 C -1.03 -55.30 9.71 67.73 0.66 -54.65 16 17 H 0.13 5.94 7.65 -2.91 -0.02 5.92 16 18 C 0.07 3.87 5.46 84.65 0.46 4.33 16 19 N -0.90 -53.90 13.19 21.45 0.28 -53.61 16 20 Si 0.99 40.49 29.54 68.60 2.03 42.51 16 21 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 24 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 26 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 27 H 0.15 3.26 5.61 -2.39 -0.01 3.25 16 28 H 0.11 3.49 7.94 -2.39 -0.02 3.47 16 29 H 0.07 2.83 6.72 -2.39 -0.02 2.82 16 30 H 0.11 3.15 5.80 -2.39 -0.01 3.14 16 31 H 0.08 3.00 6.86 -2.39 -0.02 2.98 16 32 H 0.08 2.01 5.66 -2.39 -0.01 1.99 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.08 2.03 4.68 -2.39 -0.01 2.02 16 40 H 0.30 16.14 8.31 -92.70 -0.77 15.37 16 Total: -1.00 -79.17 336.89 1.73 -77.43 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 1.05 Total: 25.79 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.43 Total: -39.38 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -1.06 Total: -94.33 kcal Atomic # 8 Polarization: -154.26 SS G_CDS: -4.44 Total: -158.70 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 146.95 SS G_CDS: -0.28 Total: 146.67 kcal Total: -79.17 1.73 -77.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.980 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds