Wall clock time and date at job start Fri Apr 10 2020 14:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47170 * 299.99721 * 6 5 3 8 8 C 1.52994 * 109.47050 * 300.00695 * 7 6 5 9 9 C 1.53005 * 109.47050 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47167 * 64.99338 * 9 8 7 11 11 S 1.65601 * 119.99465 * 164.99897 * 10 9 8 12 12 O 1.42110 * 106.39807 * 178.53806 * 11 10 9 13 13 O 1.42091 * 106.40844 * 311.45821 * 11 10 9 14 14 C 1.76201 * 107.22004 * 65.00520 * 11 10 9 15 15 H 1.08002 * 119.99585 * 359.97438 * 14 11 10 16 16 C 1.37868 * 120.00117 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00439 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99983 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46839 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47144 * 120.00105 * 18 16 14 21 21 H 1.48497 * 109.47080 * 240.00354 * 18 16 14 22 22 C 1.52998 * 109.47692 * 59.99291 * 8 7 6 23 23 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 24 24 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 25 25 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 27 27 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 28 28 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 29 29 H 1.08996 * 109.47248 * 180.02562 * 6 5 3 30 30 H 1.08999 * 109.47484 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.46707 * 59.99911 * 7 6 5 32 32 H 1.09005 * 109.46726 * 299.99205 * 8 7 6 33 33 H 1.08996 * 109.46857 * 184.99567 * 9 8 7 34 34 H 1.09001 * 109.46989 * 304.99165 * 9 8 7 35 35 H 0.96999 * 119.99947 * 345.00763 * 10 9 8 36 36 H 0.96992 * 119.99975 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46987 * 179.97438 * 22 8 7 38 38 H 1.09005 * 109.46648 * 60.00420 * 22 8 7 39 39 H 1.08996 * 109.47365 * 179.97438 * 23 5 3 40 40 H 1.09004 * 109.47330 * 299.99977 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 3.5653 1.2754 2.4991 8 6 3.9990 2.7426 2.4989 9 6 3.4520 3.4362 3.7482 10 7 4.0677 2.8501 4.9414 11 16 3.9585 3.6308 6.3977 12 8 4.6157 2.8025 7.3472 13 8 4.3276 4.9817 6.1577 14 6 2.2560 3.6531 6.8512 15 1 1.5187 3.2024 6.2034 16 6 1.8651 4.2459 8.0329 17 7 2.7629 4.7944 8.8221 18 14 0.0600 4.2702 8.5133 19 1 -0.7409 3.5914 7.4630 20 1 -0.1178 3.5615 9.8061 21 1 -0.3962 5.6765 8.6529 22 6 3.4526 3.4359 1.2493 23 6 4.0001 2.7421 0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.9564 0.7806 -0.8891 28 1 3.8038 -0.4637 1.2503 29 1 5.2013 0.6390 1.2509 30 1 3.9543 0.7812 3.3894 31 1 2.4768 1.2184 2.4986 32 1 5.0876 2.7996 2.4994 33 1 3.6850 4.5001 3.7044 34 1 2.3712 3.3026 3.7941 35 1 4.5394 2.0049 4.8782 36 1 2.4879 5.2111 9.6536 37 1 3.7612 4.4813 1.2496 38 1 2.3640 3.3789 1.2490 39 1 5.0886 2.7992 0.0020 40 1 3.6107 3.2365 -0.8889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:22 Heat of formation + Delta-G solvation = -229.660872 kcal Electronic energy + Delta-G solvation = -24013.467365 eV Core-core repulsion = 20338.592705 eV Total energy + Delta-G solvation = -3674.874660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92636 -39.44234 -37.47935 -37.34222 -36.14452 -35.92198 -35.17279 -32.21982 -31.53432 -28.75362 -28.27386 -26.50813 -23.87054 -23.52574 -21.76819 -20.99915 -20.55199 -19.32474 -18.33571 -18.22516 -17.58676 -17.30508 -17.15137 -16.62863 -16.15788 -15.90666 -15.38143 -15.22102 -14.89996 -14.71486 -14.27738 -14.07051 -13.99901 -13.42213 -13.30023 -13.15985 -13.04787 -13.02572 -12.82066 -12.71669 -12.51581 -12.41831 -12.31676 -12.28270 -11.96542 -11.86601 -11.66527 -11.28011 -11.07937 -11.05782 -10.94823 -10.85717 -10.16746 -8.77076 -7.49553 0.37009 1.25772 1.30684 1.31733 1.49091 1.85799 2.19074 2.56057 3.00773 3.60914 3.65301 3.73713 3.78055 3.94793 4.20509 4.22622 4.30149 4.33347 4.37240 4.49088 4.50814 4.56007 4.62208 4.70783 4.73072 4.79319 4.92072 5.04038 5.10197 5.18066 5.20688 5.28072 5.29578 5.33827 5.40441 5.46205 5.71452 5.88243 6.42853 6.77114 6.81880 8.19728 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.004115 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.004796 B = 6802.186955 C = 7656.971331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.533 6.533 5 C -0.077 4.077 6 C -0.104 4.104 7 C -0.124 4.124 8 C -0.086 4.086 9 C 0.124 3.876 10 N -1.118 6.118 11 S 2.723 3.277 12 O -1.044 7.044 13 O -1.044 7.044 14 C -1.042 5.042 15 H 0.115 0.885 16 C 0.070 3.930 17 N -0.893 5.893 18 Si 0.989 3.011 19 H -0.251 1.251 20 H -0.257 1.257 21 H -0.258 1.258 22 C -0.131 4.131 23 C -0.097 4.097 24 H 0.063 0.937 25 H 0.128 0.872 26 H 0.051 0.949 27 H 0.140 0.860 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.415 0.585 36 H 0.299 0.701 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 -11.015 -20.855 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.304 3.696 4 O -0.422 6.422 5 C -0.095 4.095 6 C -0.141 4.141 7 C -0.162 4.162 8 C -0.106 4.106 9 C -0.003 4.003 10 N -0.878 5.878 11 S 2.823 3.177 12 O -1.034 7.034 13 O -1.034 7.034 14 C -1.175 5.175 15 H 0.134 0.866 16 C -0.143 4.143 17 N -0.524 5.524 18 Si 0.807 3.193 19 H -0.174 1.174 20 H -0.181 1.181 21 H -0.183 1.183 22 C -0.169 4.169 23 C -0.134 4.134 24 H 0.081 0.919 25 H 0.147 0.853 26 H 0.070 0.930 27 H 0.158 0.842 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.250 0.750 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.009 -10.095 -20.219 22.621 hybrid contribution -1.554 0.010 0.616 1.672 sum -2.563 -10.085 -19.602 22.193 Atomic orbital electron populations 1.23456 0.75623 1.05363 1.02077 1.86500 1.24287 1.33404 1.83806 1.24469 0.93265 0.80922 0.70900 1.90616 1.68124 1.37115 1.46345 1.21306 0.85292 0.99795 1.03154 1.21570 1.02627 0.99429 0.90471 1.21705 1.00024 0.94905 0.99579 1.21386 1.01578 0.95155 0.92473 1.21317 0.96775 0.97436 0.84753 1.55311 1.71177 1.37090 1.24218 0.99774 0.76060 0.71464 0.70394 1.93310 1.78361 1.70162 1.61554 1.93298 1.85728 1.38889 1.85495 1.30941 1.19808 1.50764 1.15987 0.86646 1.25993 1.05995 0.88880 0.93410 1.69987 1.38082 1.31583 1.12771 0.85122 0.75146 0.79644 0.79366 1.17413 1.18095 1.18252 1.21782 1.01954 0.99620 0.93539 1.21424 1.02314 0.92016 0.97671 0.91859 0.85335 0.93041 0.84222 0.89536 0.87710 0.90835 0.93920 0.88837 0.92121 0.93028 0.75016 0.89079 0.91516 0.91462 0.87940 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.01 10.47 -51.46 -0.54 -7.55 16 3 C 0.46 9.75 5.74 71.24 0.41 10.16 16 4 O -0.53 -14.71 13.41 21.98 0.29 -14.41 16 5 C -0.08 -1.12 3.11 -11.54 -0.04 -1.16 16 6 C -0.10 -1.48 5.39 30.60 0.16 -1.32 16 7 C -0.12 -2.73 4.86 30.59 0.15 -2.58 16 8 C -0.09 -2.14 2.29 -10.79 -0.02 -2.16 16 9 C 0.12 4.31 5.61 86.38 0.49 4.79 16 10 N -1.12 -44.35 5.88 -187.48 -1.10 -45.45 16 11 S 2.72 148.75 5.02 -56.49 -0.28 148.47 16 12 O -1.04 -62.99 18.02 -128.00 -2.31 -65.29 16 13 O -1.04 -63.54 17.49 -128.00 -2.24 -65.78 16 14 C -1.04 -58.75 9.72 67.73 0.66 -58.09 16 15 H 0.12 5.96 7.81 -2.91 -0.02 5.93 16 16 C 0.07 3.98 5.46 84.65 0.46 4.44 16 17 N -0.89 -54.13 13.19 21.44 0.28 -53.84 16 18 Si 0.99 42.31 29.54 68.60 2.03 44.34 16 19 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 22 C -0.13 -3.04 4.91 30.58 0.15 -2.89 16 23 C -0.10 -1.56 5.09 30.57 0.16 -1.40 16 24 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 25 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.11 8.11 -2.39 -0.02 1.09 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.60 6.90 -2.39 -0.02 1.59 16 31 H 0.04 1.08 7.22 -2.38 -0.02 1.07 16 32 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 13.85 7.41 -96.74 -0.72 13.13 16 36 H 0.30 16.20 8.31 -92.71 -0.77 15.43 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.90 5.52 -2.38 -0.01 1.88 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.16 8.10 -2.38 -0.02 1.14 16 Total: -1.00 -81.80 337.46 0.24 -81.56 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.33 Total: 26.53 kcal Atomic # 6 Polarization: -52.33 SS G_CDS: 3.77 Total: -48.56 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -0.82 Total: -99.29 kcal Atomic # 8 Polarization: -148.25 SS G_CDS: -4.79 Total: -153.04 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 148.75 SS G_CDS: -0.28 Total: 148.47 kcal Total: -81.80 0.24 -81.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.100 kcal (2) G-P(sol) polarization free energy of solvation -81.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds