Wall clock time and date at job start Fri Apr 10 2020 14:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99919 * 2 1 4 4 O 1.20828 * 120.00266 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00133 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47183 * 176.67349 * 5 3 2 7 7 N 1.46499 * 109.46975 * 306.05520 * 6 5 3 8 8 S 1.65602 * 119.99752 * 295.84126 * 7 6 5 9 9 O 1.42098 * 106.40220 * 312.37194 * 8 7 6 10 10 O 1.42102 * 106.40288 * 179.45647 * 8 7 6 11 11 C 1.76196 * 107.21917 * 65.91699 * 8 7 6 12 12 H 1.07999 * 120.00163 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99842 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00049 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99959 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47042 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47007 * 119.99815 * 15 13 11 18 18 H 1.48500 * 109.47027 * 240.00140 * 15 13 11 19 19 C 1.52994 * 109.47152 * 66.05490 * 6 5 3 20 20 C 1.53000 * 109.47152 * 180.02562 * 19 6 5 21 21 C 1.53004 * 109.47185 * 299.99982 * 20 19 6 22 22 C 1.53002 * 109.46878 * 59.99541 * 21 20 19 23 23 C 1.52995 * 109.47265 * 300.00220 * 22 21 20 24 24 H 1.09002 * 109.46981 * 60.00298 * 1 2 3 25 25 H 1.09009 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47052 * 299.99670 * 1 2 3 27 27 H 1.09000 * 109.46675 * 56.66726 * 5 3 2 28 28 H 1.09000 * 109.46661 * 296.66979 * 5 3 2 29 29 H 0.97000 * 120.00187 * 115.83927 * 7 6 5 30 30 H 0.97004 * 119.99806 * 180.02562 * 14 13 11 31 31 H 1.09008 * 109.47127 * 299.99930 * 19 6 5 32 32 H 1.08998 * 109.47554 * 60.00204 * 19 6 5 33 33 H 1.08998 * 109.47163 * 179.97438 * 20 19 6 34 34 H 1.09002 * 109.47415 * 59.99900 * 20 19 6 35 35 H 1.09002 * 109.46878 * 300.00248 * 21 20 19 36 36 H 1.08998 * 109.46877 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47104 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.46789 * 60.00653 * 22 21 20 39 39 H 1.08996 * 109.47202 * 299.99735 * 23 22 21 40 40 H 1.09008 * 109.46985 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0003 2.7397 -0.0832 7 7 3.3631 3.3722 -1.2408 8 16 3.7221 2.8509 -2.7711 9 8 5.1386 2.7662 -2.8442 10 8 2.9442 3.6434 -3.6578 11 6 3.1168 1.2025 -2.9160 12 1 2.6198 0.7342 -2.0793 13 6 3.2776 0.5105 -4.0976 14 7 3.8832 1.0806 -5.1164 15 14 2.6366 -1.2374 -4.2511 16 1 2.0002 -1.6452 -2.9728 17 1 1.6347 -1.3029 -5.3452 18 1 3.7647 -2.1533 -4.5573 19 6 3.5790 3.4702 1.1933 20 6 4.0124 4.9351 1.1092 21 6 5.5331 5.0093 0.9574 22 6 5.9543 4.2786 -0.3192 23 6 5.5209 2.8137 -0.2350 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9590 0.7298 -0.8578 28 1 3.9529 0.8334 0.9192 29 1 2.7309 4.0964 -1.1109 30 1 3.9961 0.5938 -5.9478 31 1 2.4956 3.4178 1.3012 32 1 4.0531 2.9996 2.0546 33 1 3.7119 5.4557 2.0184 34 1 3.5380 5.4056 0.2479 35 1 6.0075 4.5388 1.8186 36 1 5.8417 6.0529 0.8970 37 1 7.0376 4.3317 -0.4276 38 1 5.4799 4.7490 -1.1804 39 1 5.9954 2.3433 0.6262 40 1 5.8207 2.2933 -1.1447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193003050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:31 Heat of formation + Delta-G solvation = -183.359961 kcal Electronic energy + Delta-G solvation = -25997.452814 eV Core-core repulsion = 22324.585912 eV Total energy + Delta-G solvation = -3672.866902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38399 -38.69345 -35.95560 -35.15868 -33.91751 -33.44639 -33.13334 -30.34941 -30.21985 -28.04961 -26.60054 -25.79214 -22.39466 -21.79714 -20.14989 -19.36515 -18.69738 -17.27501 -17.07751 -16.62842 -16.03452 -15.91243 -15.34015 -14.75804 -14.59968 -14.08554 -13.79444 -13.44962 -13.41262 -13.28802 -12.95394 -12.24997 -12.10842 -12.05733 -11.90760 -11.77073 -11.64754 -11.50322 -11.24656 -10.85677 -10.73639 -10.55582 -10.46487 -10.39810 -10.23489 -10.19736 -10.12751 -10.05360 -9.67408 -9.27160 -9.11768 -8.88386 -8.42575 -6.70901 -5.32804 2.41948 2.73375 3.04157 3.13644 3.15570 3.22673 4.06746 4.61957 4.68519 4.91046 5.03395 5.17449 5.31838 5.34135 5.42733 5.45993 5.54273 5.69837 5.72064 5.75536 5.81660 5.90305 5.92365 6.01770 6.04471 6.21262 6.26695 6.37846 6.48148 6.50306 6.60023 6.65047 6.78066 6.89454 7.01368 7.22100 7.33844 7.91294 8.09689 8.26644 8.88218 10.22605 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.008601 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.570121 B = 3254.839418 C = 4449.148898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.499 6.499 5 C -0.153 4.153 6 C 0.212 3.788 7 N -1.116 6.116 8 S 2.713 3.287 9 O -0.999 6.999 10 O -1.011 7.011 11 C -1.027 5.027 12 H 0.103 0.897 13 C 0.138 3.862 14 N -0.841 5.841 15 Si 0.908 3.092 16 H -0.256 1.256 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.105 4.105 23 C -0.153 4.153 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.137 0.863 28 H 0.107 0.893 29 H 0.406 0.594 30 H 0.290 0.710 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -0.553 13.243 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.318 3.682 4 O -0.386 6.386 5 C -0.192 4.192 6 C 0.122 3.878 7 N -0.871 5.871 8 S 2.813 3.187 9 O -0.989 6.989 10 O -1.001 7.001 11 C -1.160 5.160 12 H 0.121 0.879 13 C -0.080 4.080 14 N -0.471 5.471 15 Si 0.732 3.268 16 H -0.180 1.180 17 H -0.198 1.198 18 H -0.195 1.195 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.142 4.142 23 C -0.191 4.191 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.125 0.875 29 H 0.239 0.761 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.284 0.143 12.377 12.381 hybrid contribution -1.260 -1.194 0.088 1.738 sum -1.544 -1.050 12.464 12.603 Atomic orbital electron populations 1.23170 0.77250 1.03045 1.02339 1.86518 1.22796 1.34114 1.84429 1.23471 0.91951 0.81127 0.71665 1.90565 1.67011 1.35944 1.45031 1.22515 0.88368 1.00826 1.07507 1.19595 0.92483 0.88485 0.87280 1.55896 1.58651 1.49432 1.23116 1.00412 0.73504 0.75581 0.69198 1.93290 1.32116 1.88662 1.84794 1.93365 1.72250 1.72490 1.62033 1.30896 1.54006 1.24162 1.06894 0.87869 1.24677 0.90197 0.99893 0.93271 1.69905 1.34695 1.38721 1.03765 0.86293 0.79380 0.81600 0.79520 1.17991 1.19755 1.19520 1.21935 1.02690 0.95641 0.95875 1.21473 0.96090 0.96379 1.01351 1.21607 0.95869 0.99845 0.98482 1.21320 1.00237 0.95410 0.97271 1.22469 0.93004 0.98493 1.05132 0.91679 0.88803 0.92414 0.84507 0.87534 0.76115 0.89992 0.89828 0.91716 0.92601 0.91644 0.92484 0.92690 0.92267 0.91714 0.91916 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.36 -6.25 10.39 -39.24 -0.41 -6.66 16 3 C 0.47 8.59 5.38 36.01 0.19 8.79 16 4 O -0.50 -9.58 12.66 -18.75 -0.24 -9.82 16 5 C -0.15 -2.56 4.24 -27.88 -0.12 -2.68 16 6 C 0.21 3.58 0.34 -131.82 -0.05 3.53 16 7 N -1.12 -22.58 2.95 0.53 0.00 -22.58 16 8 S 2.71 70.45 4.92 -107.50 -0.53 69.92 16 9 O -1.00 -26.84 13.87 -57.17 -0.79 -27.63 16 10 O -1.01 -30.28 18.02 -57.17 -1.03 -31.31 16 11 C -1.03 -27.18 7.72 30.60 0.24 -26.95 16 12 H 0.10 2.51 3.90 -52.49 -0.20 2.31 16 13 C 0.14 3.75 5.46 -17.82 -0.10 3.65 16 14 N -0.84 -24.23 13.19 55.43 0.73 -23.50 16 15 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 16 16 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 C -0.12 -1.73 4.52 -26.73 -0.12 -1.85 16 20 C -0.12 -1.52 5.75 -26.73 -0.15 -1.68 16 21 C -0.12 -1.56 5.92 -26.73 -0.16 -1.71 16 22 C -0.10 -1.67 5.52 -26.73 -0.15 -1.82 16 23 C -0.15 -2.54 4.18 -26.73 -0.11 -2.65 16 24 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 25 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.14 2.56 5.63 -51.93 -0.29 2.27 16 28 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.41 7.81 7.43 -34.47 -0.26 7.56 16 30 H 0.29 7.52 8.31 -40.82 -0.34 7.19 16 31 H 0.08 1.26 5.93 -51.92 -0.31 0.95 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.93 6.95 -51.93 -0.36 0.57 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.18 7.25 -51.93 -0.38 0.80 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.12 2.38 5.30 -51.92 -0.28 2.11 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -34.01 318.55 -7.38 -41.38 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.44 Total: 12.05 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 0.54 Total: -21.79 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.73 Total: -46.08 kcal Atomic # 8 Polarization: -72.95 SS G_CDS: -2.47 Total: -75.42 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 70.45 SS G_CDS: -0.53 Total: 69.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.01 -7.38 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.976 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds