Wall clock time and date at job start Fri Apr 10 2020 14:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34234 * 116.99944 * 2 1 4 4 O 1.20821 * 119.99816 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00033 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.02032 * 301.38621 * 5 3 2 7 7 C 1.53878 * 110.03496 * 62.83189 * 5 3 2 8 8 C 1.54262 * 106.60144 * 119.28034 * 7 5 3 9 9 C 1.54885 * 104.19450 * 23.61097 * 8 7 5 10 10 H 1.09000 * 110.91175 * 80.44942 * 9 8 7 11 11 N 1.46506 * 110.75732 * 203.73974 * 9 8 7 12 12 S 1.65600 * 119.99871 * 258.33320 * 11 9 8 13 13 O 1.42101 * 104.27882 * 308.92501 * 12 11 9 14 14 O 1.42102 * 104.27187 * 181.06876 * 12 11 9 15 15 C 1.81399 * 104.45301 * 64.99838 * 12 11 9 16 16 C 1.52996 * 109.47218 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.47142 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00056 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00096 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99899 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00143 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46911 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47349 * 119.99631 * 21 19 17 24 24 H 1.48498 * 109.47081 * 239.99879 * 21 19 17 25 25 C 1.54275 * 110.03245 * 179.97438 * 5 3 2 26 26 H 1.08997 * 109.47488 * 60.00636 * 1 2 3 27 27 H 1.09004 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47315 * 300.00091 * 1 2 3 29 29 H 1.08997 * 110.03250 * 238.57193 * 7 5 3 30 30 H 1.09007 * 110.03022 * 359.94888 * 7 5 3 31 31 H 1.09002 * 110.48997 * 264.93394 * 8 7 5 32 32 H 1.09003 * 110.48452 * 142.29128 * 8 7 5 33 33 H 0.97002 * 119.99684 * 78.32779 * 11 9 8 34 34 H 1.09001 * 109.46838 * 300.00058 * 15 12 11 35 35 H 1.08998 * 109.46934 * 59.99858 * 15 12 11 36 36 H 1.09004 * 109.47227 * 300.00383 * 16 15 12 37 37 H 1.09001 * 109.46834 * 59.99744 * 16 15 12 38 38 H 0.97002 * 120.00322 * 180.02562 * 20 19 17 39 39 H 1.08993 * 110.48234 * 98.42692 * 25 5 3 40 40 H 1.09002 * 110.48262 * 335.78061 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9665 0.7620 0.8751 7 6 4.1278 0.6431 -1.2852 8 6 4.9011 1.7561 -2.0219 9 6 5.2747 2.7622 -0.9051 10 1 6.1516 2.4232 -0.3535 11 7 5.4994 4.0979 -1.4634 12 16 7.0436 4.6498 -1.6940 13 8 7.6829 4.4354 -0.4432 14 8 6.8729 5.9611 -2.2143 15 6 7.7340 3.5480 -2.9589 16 6 9.1754 3.9609 -3.2632 17 6 9.7488 3.0460 -4.3145 18 1 9.1455 2.2494 -4.7243 19 6 11.0438 3.2252 -4.7524 20 7 11.7786 4.1949 -4.2531 21 14 11.7548 2.0907 -6.0551 22 1 10.7325 1.0886 -6.4499 23 1 12.1515 2.8883 -7.2432 24 1 12.9456 1.3928 -5.5072 25 6 4.0181 2.7500 -0.0002 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.8011 -0.1768 -1.0351 30 1 3.3117 0.2785 -1.9093 31 1 4.2652 2.2330 -2.7678 32 1 5.7999 1.3520 -2.4877 33 1 4.7437 4.6589 -1.6980 34 1 7.7192 2.5212 -2.5936 35 1 7.1366 3.6190 -3.8678 36 1 9.1898 4.9878 -3.6287 37 1 9.7731 3.8904 -2.3544 38 1 12.6896 4.3213 -4.5614 39 1 4.2725 3.0715 1.0097 40 1 3.2396 3.3872 -0.4198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194149562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:40 Heat of formation + Delta-G solvation = -180.028943 kcal Electronic energy + Delta-G solvation = -23234.654327 eV Core-core repulsion = 19561.931868 eV Total energy + Delta-G solvation = -3672.722458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.01702 -38.52633 -36.72206 -36.52973 -35.43773 -33.90329 -33.71637 -31.18177 -29.53156 -28.53556 -27.10214 -25.60363 -22.82004 -21.69566 -21.07185 -20.19375 -19.04661 -17.93658 -17.58542 -17.13901 -16.85121 -16.46013 -15.84760 -15.56073 -15.33878 -14.82533 -14.55910 -13.93699 -13.79513 -13.54233 -13.42500 -13.10315 -12.54999 -12.48602 -12.34435 -11.87648 -11.73765 -11.69205 -11.58547 -11.53143 -11.30862 -11.18383 -11.13910 -11.10043 -10.97730 -10.94013 -10.54316 -10.39654 -10.38462 -9.81593 -9.46856 -9.02913 -8.51428 -6.13279 -4.18782 0.79015 1.88160 2.35075 3.11925 3.24587 3.31998 3.35050 4.07827 4.17425 4.25553 4.37530 4.46687 4.72423 4.73227 4.76558 4.81152 4.97246 5.06265 5.14631 5.15448 5.18535 5.22151 5.27829 5.48417 5.57046 5.63878 5.76564 5.78981 5.91099 5.94637 6.04942 6.25848 6.48760 7.09421 7.30017 7.36010 7.41366 7.79897 8.16783 8.84979 9.46096 10.97811 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020888 B = 0.003227 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.141712 B = 8675.410474 C = 9684.453169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.087 4.087 6 H 0.117 0.883 7 C -0.110 4.110 8 C -0.150 4.150 9 C 0.144 3.856 10 H 0.107 0.893 11 N -1.118 6.118 12 S 2.591 3.409 13 O -0.967 6.967 14 O -0.967 6.967 15 C -0.589 4.589 16 C 0.027 3.973 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.118 4.118 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.413 0.587 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.403 -9.685 7.951 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.107 4.107 6 H 0.135 0.865 7 C -0.149 4.149 8 C -0.190 4.190 9 C 0.036 3.964 10 H 0.125 0.875 11 N -0.873 5.873 12 S 2.688 3.312 13 O -0.957 6.957 14 O -0.958 6.958 15 C -0.722 4.722 16 C -0.012 4.012 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.157 4.157 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.247 0.753 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.939 -8.650 8.487 23.333 hybrid contribution -0.283 -0.872 -1.217 1.524 sum -20.223 -9.522 7.270 23.505 Atomic orbital electron populations 1.23276 0.76364 1.03721 1.02582 1.86518 1.23391 1.33473 1.84079 1.23777 0.92118 0.81242 0.71849 1.90665 1.67094 1.36369 1.45103 1.21717 0.86930 0.99618 1.02388 0.86534 1.22064 1.00283 0.98518 0.93985 1.23032 1.01406 0.96092 0.98449 1.21737 0.99097 0.81974 0.93587 0.87491 1.55802 1.26373 1.25247 1.79899 1.05611 0.73001 0.75789 0.76759 1.93542 1.74745 1.86638 1.40760 1.93556 1.84435 1.35909 1.81868 1.30485 1.11695 1.14474 1.15549 1.18968 0.85008 0.98314 0.98874 1.21036 0.97926 1.15012 1.21879 0.91979 1.25074 0.97048 0.95586 0.96825 1.69964 1.09306 1.30800 1.42775 0.86420 0.79075 0.80551 0.81269 1.19646 1.20827 1.20816 1.22662 0.97788 0.93645 1.01606 0.91866 0.88060 0.91912 0.89602 0.90778 0.90268 0.89689 0.75318 0.86270 0.86041 0.94862 0.94820 0.92581 0.89792 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.10 10.54 -39.27 -0.41 -3.52 16 3 C 0.47 4.59 7.00 36.00 0.25 4.84 16 4 O -0.51 -6.33 15.15 -18.75 -0.28 -6.62 16 5 C -0.09 -0.70 3.41 -90.65 -0.31 -1.01 16 6 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.11 -0.83 6.43 -25.61 -0.16 -0.99 16 8 C -0.15 -1.36 6.51 -25.08 -0.16 -1.52 16 9 C 0.14 1.53 3.46 -65.96 -0.23 1.30 16 10 H 0.11 1.14 7.57 -51.93 -0.39 0.75 16 11 N -1.12 -13.91 5.48 -3.21 -0.02 -13.93 16 12 S 2.59 44.97 5.43 -107.50 -0.58 44.38 16 13 O -0.97 -19.52 17.45 -57.54 -1.00 -20.52 16 14 O -0.97 -19.94 18.08 -57.54 -1.04 -20.98 16 15 C -0.59 -10.76 6.01 37.16 0.22 -10.54 16 16 C 0.03 0.68 4.98 -27.89 -0.14 0.55 16 17 C -0.52 -14.07 9.11 -34.44 -0.31 -14.39 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.12 -1.12 5.81 -25.09 -0.15 -1.26 16 26 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.54 7.66 -51.92 -0.40 0.15 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.76 7.58 -51.93 -0.39 0.37 16 33 H 0.41 4.44 8.78 -34.48 -0.30 4.14 16 34 H 0.12 1.89 7.58 -51.92 -0.39 1.50 16 35 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.98 6.80 -51.93 -0.35 0.62 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -36.30 348.43 -8.40 -44.70 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.00 Total: 1.11 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.02 Total: -20.26 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.72 Total: -39.48 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -2.74 Total: -51.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 44.97 SS G_CDS: -0.58 Total: 44.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.30 -8.40 -44.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194149562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.331 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds