Wall clock time and date at job start Fri Apr 10 2020 14:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34234 * 116.99944 * 2 1 4 4 O 1.20821 * 119.99816 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00033 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.02032 * 301.38621 * 5 3 2 7 7 C 1.53878 * 110.03496 * 62.83189 * 5 3 2 8 8 C 1.54262 * 106.60144 * 119.28034 * 7 5 3 9 9 C 1.54885 * 104.19450 * 23.61097 * 8 7 5 10 10 H 1.09000 * 110.91175 * 80.44942 * 9 8 7 11 11 N 1.46506 * 110.75732 * 203.73974 * 9 8 7 12 12 S 1.65600 * 119.99871 * 258.33320 * 11 9 8 13 13 O 1.42101 * 104.27882 * 308.92501 * 12 11 9 14 14 O 1.42102 * 104.27187 * 181.06876 * 12 11 9 15 15 C 1.81399 * 104.45301 * 64.99838 * 12 11 9 16 16 C 1.52996 * 109.47218 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.47142 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00056 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00096 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99899 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00143 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46911 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47349 * 119.99631 * 21 19 17 24 24 H 1.48498 * 109.47081 * 239.99879 * 21 19 17 25 25 C 1.54275 * 110.03245 * 179.97438 * 5 3 2 26 26 H 1.08997 * 109.47488 * 60.00636 * 1 2 3 27 27 H 1.09004 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47315 * 300.00091 * 1 2 3 29 29 H 1.08997 * 110.03250 * 238.57193 * 7 5 3 30 30 H 1.09007 * 110.03022 * 359.94888 * 7 5 3 31 31 H 1.09002 * 110.48997 * 264.93394 * 8 7 5 32 32 H 1.09003 * 110.48452 * 142.29128 * 8 7 5 33 33 H 0.97002 * 119.99684 * 78.32779 * 11 9 8 34 34 H 1.09001 * 109.46838 * 300.00058 * 15 12 11 35 35 H 1.08998 * 109.46934 * 59.99858 * 15 12 11 36 36 H 1.09004 * 109.47227 * 300.00383 * 16 15 12 37 37 H 1.09001 * 109.46834 * 59.99744 * 16 15 12 38 38 H 0.97002 * 120.00322 * 180.02562 * 20 19 17 39 39 H 1.08993 * 110.48234 * 98.42692 * 25 5 3 40 40 H 1.09002 * 110.48262 * 335.78061 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9665 0.7620 0.8751 7 6 4.1278 0.6431 -1.2852 8 6 4.9011 1.7561 -2.0219 9 6 5.2747 2.7622 -0.9051 10 1 6.1516 2.4232 -0.3535 11 7 5.4994 4.0979 -1.4634 12 16 7.0436 4.6498 -1.6940 13 8 7.6829 4.4354 -0.4432 14 8 6.8729 5.9611 -2.2143 15 6 7.7340 3.5480 -2.9589 16 6 9.1754 3.9609 -3.2632 17 6 9.7488 3.0460 -4.3145 18 1 9.1455 2.2494 -4.7243 19 6 11.0438 3.2252 -4.7524 20 7 11.7786 4.1949 -4.2531 21 14 11.7548 2.0907 -6.0551 22 1 10.7325 1.0886 -6.4499 23 1 12.1515 2.8883 -7.2432 24 1 12.9456 1.3928 -5.5072 25 6 4.0181 2.7500 -0.0002 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.8011 -0.1768 -1.0351 30 1 3.3117 0.2785 -1.9093 31 1 4.2652 2.2330 -2.7678 32 1 5.7999 1.3520 -2.4877 33 1 4.7437 4.6589 -1.6980 34 1 7.7192 2.5212 -2.5936 35 1 7.1366 3.6190 -3.8678 36 1 9.1898 4.9878 -3.6287 37 1 9.7731 3.8904 -2.3544 38 1 12.6896 4.3213 -4.5614 39 1 4.2725 3.0715 1.0097 40 1 3.2396 3.3872 -0.4198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194149562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:40 Heat of formation + Delta-G solvation = -206.841013 kcal Electronic energy + Delta-G solvation = -23235.816985 eV Core-core repulsion = 19561.931868 eV Total energy + Delta-G solvation = -3673.885117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73577 -39.28575 -38.09838 -37.44072 -36.98553 -35.86228 -34.66050 -33.09861 -30.22864 -29.22142 -27.76497 -27.54762 -23.65546 -23.43270 -21.87418 -20.90653 -20.35019 -19.14095 -18.64243 -18.28395 -17.89414 -17.55792 -17.00536 -16.90641 -16.49705 -16.24165 -15.99179 -15.10086 -14.56579 -14.54329 -14.43460 -14.26227 -14.04479 -13.68633 -13.27632 -13.13639 -13.10698 -13.01685 -12.93283 -12.76086 -12.63394 -12.50509 -12.20629 -12.19178 -12.05889 -11.89773 -11.78216 -11.73961 -11.67277 -11.21759 -11.11382 -10.62946 -10.30898 -8.23424 -6.36887 -0.64746 1.15815 1.43454 1.43735 1.56991 1.70413 1.91310 2.40335 2.84630 3.10569 3.27115 3.38549 3.51241 3.83849 4.02483 4.07919 4.16841 4.27013 4.31395 4.33366 4.35559 4.44609 4.51589 4.62215 4.69306 4.74426 4.79850 4.93982 5.14444 5.23127 5.27219 5.32422 5.33193 5.37425 5.49148 5.72004 6.09182 6.13402 6.71272 6.77687 7.33366 8.89143 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.020888 B = 0.003227 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.141712 B = 8675.410474 C = 9684.453169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.539 6.539 5 C -0.083 4.083 6 H 0.141 0.859 7 C -0.105 4.105 8 C -0.152 4.152 9 C 0.133 3.867 10 H 0.109 0.891 11 N -1.100 6.100 12 S 2.617 3.383 13 O -0.996 6.996 14 O -1.003 7.003 15 C -0.584 4.584 16 C 0.019 3.981 17 C -0.534 4.534 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.936 5.936 21 Si 0.973 3.027 22 H -0.253 1.253 23 H -0.281 1.281 24 H -0.279 1.279 25 C -0.116 4.116 26 H 0.059 0.941 27 H 0.131 0.869 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.424 0.576 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.003 0.997 37 H 0.008 0.992 38 H 0.266 0.734 39 H 0.086 0.914 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.697 -12.350 7.468 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.429 6.429 5 C -0.103 4.103 6 H 0.159 0.841 7 C -0.143 4.143 8 C -0.191 4.191 9 C 0.026 3.974 10 H 0.127 0.873 11 N -0.860 5.860 12 S 2.714 3.286 13 O -0.986 6.986 14 O -0.994 6.994 15 C -0.717 4.717 16 C -0.020 4.020 17 C -0.573 4.573 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.797 3.203 22 H -0.177 1.177 23 H -0.207 1.207 24 H -0.205 1.205 25 C -0.155 4.155 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.260 0.740 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.022 0.978 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.251 -11.337 7.999 25.379 hybrid contribution 0.006 -0.055 -1.006 1.008 sum -21.245 -11.392 6.993 25.100 Atomic orbital electron populations 1.23528 0.75100 1.05624 1.02355 1.86512 1.24689 1.32763 1.83612 1.24101 0.92727 0.81047 0.70829 1.90656 1.67940 1.37465 1.46838 1.21769 0.85897 0.98736 1.03883 0.84086 1.22066 1.00501 0.98349 0.93356 1.23056 1.01904 0.96090 0.98036 1.22042 0.99797 0.80948 0.94651 0.87297 1.55311 1.24560 1.26487 1.79631 1.04532 0.73645 0.74715 0.75701 1.93502 1.76267 1.86853 1.41994 1.93502 1.85332 1.38233 1.82287 1.30363 1.07740 1.16265 1.17291 1.18829 0.88978 0.96769 0.97382 1.21562 0.98369 1.15385 1.21987 0.90313 1.26122 0.97750 0.97210 0.99308 1.70113 1.09799 1.32993 1.44703 0.85270 0.78488 0.78547 0.77969 1.17670 1.20712 1.20476 1.22608 0.96811 0.94789 1.01341 0.92207 0.85131 0.92107 0.87658 0.90434 0.90148 0.89223 0.74017 0.83427 0.83837 0.97831 0.97402 0.92495 0.89526 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.47 10.54 -51.45 -0.54 -6.01 16 3 C 0.47 8.38 7.00 71.23 0.50 8.88 16 4 O -0.54 -13.07 15.15 21.98 0.33 -12.74 16 5 C -0.08 -1.13 3.41 -10.81 -0.04 -1.17 16 6 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 7 C -0.10 -1.24 6.43 31.32 0.20 -1.03 16 8 C -0.15 -2.32 6.51 31.67 0.21 -2.11 16 9 C 0.13 2.54 3.46 46.27 0.16 2.70 16 10 H 0.11 2.09 7.57 -2.39 -0.02 2.07 16 11 N -1.10 -25.95 5.48 -164.08 -0.90 -26.85 16 12 S 2.62 90.30 5.43 -56.49 -0.31 89.99 16 13 O -1.00 -40.36 17.45 -127.65 -2.23 -42.59 16 14 O -1.00 -41.88 18.08 -127.65 -2.31 -44.19 16 15 C -0.58 -20.79 6.01 71.98 0.43 -20.35 16 16 C 0.02 0.98 4.98 29.85 0.15 1.13 16 17 C -0.53 -28.80 9.11 25.60 0.23 -28.56 16 18 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 19 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 20 N -0.94 -56.56 13.29 21.45 0.28 -56.27 16 21 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 22 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 C -0.12 -2.00 5.81 31.66 0.18 -1.82 16 26 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 27 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.90 7.66 -2.38 -0.02 0.88 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.31 7.58 -2.39 -0.02 1.29 16 33 H 0.42 8.59 8.78 -96.74 -0.85 7.74 16 34 H 0.15 4.36 7.58 -2.39 -0.02 4.34 16 35 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 36 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.65 6.80 -2.39 -0.02 1.63 16 Total: -1.00 -79.60 348.43 0.24 -79.35 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.19 Total: 15.45 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 3.69 Total: -40.72 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -0.61 Total: -83.12 kcal Atomic # 8 Polarization: -100.78 SS G_CDS: -4.74 Total: -105.52 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 90.30 SS G_CDS: -0.31 Total: 89.99 kcal Total: -79.60 0.24 -79.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194149562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.487 kcal (2) G-P(sol) polarization free energy of solvation -79.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds