Wall clock time and date at job start Fri Apr 10 2020 14:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00293 * 2 1 4 4 O 1.20827 * 119.99437 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00247 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.54041 * 302.61495 * 5 3 2 7 7 C 1.54965 * 110.52983 * 65.24738 * 5 3 2 8 8 C 1.54886 * 102.77945 * 156.56536 * 7 5 3 9 9 C 1.54259 * 104.19873 * 322.08197 * 8 7 5 10 10 C 1.53885 * 106.59771 * 23.61129 * 9 8 7 11 11 H 1.08995 * 110.02949 * 240.66607 * 10 9 8 12 12 S 1.81399 * 110.03355 * 119.28420 * 10 9 8 13 13 O 1.42095 * 110.53985 * 173.72007 * 12 10 9 14 14 O 1.42104 * 110.54031 * 310.46815 * 12 10 9 15 15 N 1.65596 * 104.44973 * 62.09122 * 12 10 9 16 16 C 1.46502 * 119.99908 * 64.99928 * 15 12 10 17 17 C 1.53006 * 109.47246 * 164.99647 * 16 15 12 18 18 C 1.50700 * 109.47038 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00123 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99837 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99943 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47044 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46997 * 119.99377 * 22 20 18 25 25 H 1.48502 * 109.46936 * 239.99680 * 22 20 18 26 26 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46625 * 299.99911 * 1 2 3 28 28 H 1.08997 * 109.46997 * 59.99911 * 1 2 3 29 29 H 1.09001 * 110.71767 * 38.24976 * 7 5 3 30 30 H 1.09004 * 110.92113 * 274.97312 * 7 5 3 31 31 H 1.08999 * 110.48720 * 203.40073 * 8 7 5 32 32 H 1.09001 * 110.48540 * 80.76024 * 8 7 5 33 33 H 1.09000 * 110.03620 * 264.33183 * 9 8 7 34 34 H 1.09000 * 110.07718 * 142.91274 * 9 8 7 35 35 H 0.96997 * 120.00299 * 244.99640 * 15 12 10 36 36 H 1.09001 * 109.47281 * 285.00125 * 16 15 12 37 37 H 1.09001 * 109.46937 * 44.99997 * 16 15 12 38 38 H 1.08993 * 109.46809 * 300.00164 * 17 16 15 39 39 H 1.08993 * 109.46597 * 60.00211 * 17 16 15 40 40 H 0.96997 * 120.00118 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9767 0.7456 0.8606 7 6 4.1414 0.6962 -1.3170 8 6 5.5253 1.3842 -1.4181 9 6 5.2748 2.8159 -0.9014 10 6 4.0299 2.7462 0.0005 11 1 3.2429 3.3856 -0.3993 12 16 4.4543 3.2641 1.6864 13 8 3.2868 3.3427 2.4926 14 8 5.6139 2.5802 2.1411 15 7 4.9453 4.8373 1.5242 16 6 3.9923 5.8607 1.0876 17 6 4.5683 7.2491 1.3735 18 6 3.5877 8.3019 0.9249 19 1 2.6479 8.0099 0.4800 20 6 3.8908 9.6377 1.0815 21 7 5.0355 9.9932 1.6228 22 14 2.6757 10.9427 0.5249 23 1 1.4727 10.2869 -0.0476 24 1 2.2790 11.7776 1.6872 25 1 3.3098 11.8011 -0.5077 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.5121 0.9678 -2.1645 30 1 4.2520 -0.3863 -1.2511 31 1 5.8657 1.4063 -2.4533 32 1 6.2526 0.8729 -0.7873 33 1 5.0914 3.4886 -1.7393 34 1 6.1336 3.1619 -0.3262 35 1 5.8638 5.0811 1.7182 36 1 3.8110 5.7557 0.0179 37 1 3.0542 5.7381 1.6289 38 1 4.7495 7.3540 2.4431 39 1 5.5064 7.3717 0.8322 40 1 5.2490 10.9330 1.7327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234577790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:31 Heat of formation + Delta-G solvation = -174.793241 kcal Electronic energy + Delta-G solvation = -23894.249302 eV Core-core repulsion = 20221.753881 eV Total energy + Delta-G solvation = -3672.495421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93038 -38.21587 -36.94949 -36.50230 -35.77458 -35.37847 -32.74178 -30.38974 -29.45807 -29.07191 -27.65786 -24.47347 -23.13038 -21.29435 -21.12166 -20.55344 -18.94881 -18.40489 -17.29776 -17.10053 -16.91059 -16.46596 -16.24411 -15.62982 -14.80783 -14.75525 -14.48035 -14.03581 -13.94616 -13.82794 -13.37916 -13.03906 -12.56072 -12.51558 -12.40881 -11.96286 -11.86849 -11.83593 -11.73527 -11.53826 -11.50040 -11.23868 -11.12268 -11.06387 -11.04340 -10.61830 -10.58692 -10.54341 -10.29239 -9.56625 -9.24098 -8.87638 -8.39934 -6.06969 -4.10089 0.41292 1.92489 2.33535 2.94707 3.29268 3.37047 3.41663 3.69409 3.95321 3.96039 4.38788 4.42184 4.52345 4.64958 4.84323 4.86732 4.87581 4.95834 4.99640 5.12766 5.26958 5.29675 5.29982 5.49589 5.63976 5.67905 5.75117 5.79198 5.96407 6.09624 6.20505 6.49149 6.74597 7.43150 7.46181 7.57686 7.67237 7.92117 8.29943 8.96163 9.54580 11.04523 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.003906 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.062165 B = 7167.323673 C = 7792.403849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.462 3.538 4 O -0.485 6.485 5 C -0.065 4.065 6 H 0.116 0.884 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.094 4.094 10 C -0.599 4.599 11 H 0.159 0.841 12 S 2.609 3.391 13 O -0.950 6.950 14 O -0.964 6.964 15 N -1.109 6.109 16 C 0.116 3.884 17 C 0.018 3.982 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -21.887 -7.375 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.303 3.697 4 O -0.370 6.370 5 C -0.086 4.086 6 H 0.134 0.866 7 C -0.140 4.140 8 C -0.162 4.162 9 C -0.133 4.133 10 C -0.706 4.706 11 H 0.176 0.824 12 S 2.699 3.301 13 O -0.940 6.940 14 O -0.954 6.954 15 N -0.870 5.870 16 C -0.009 4.009 17 C -0.021 4.021 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.251 0.749 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.156 -21.964 -6.568 23.026 hybrid contribution -0.642 1.234 -0.813 1.611 sum -2.798 -20.730 -7.381 22.182 Atomic orbital electron populations 1.23340 0.75886 1.03808 1.03034 1.86467 1.23756 1.32849 1.84187 1.23343 0.91505 0.81818 0.73024 1.90738 1.66570 1.36057 1.43674 1.21514 0.88363 0.94904 1.03783 0.86642 1.22463 0.96696 1.00772 0.94021 1.22407 0.96600 0.94770 1.02378 1.21817 0.93377 0.98897 0.99192 1.31304 1.09015 1.03657 1.26625 0.82366 1.05086 0.74540 0.73918 0.76521 1.93610 1.51462 1.85513 1.63396 1.93570 1.48837 1.74107 1.78924 1.55479 1.22090 1.24513 1.84922 1.21681 0.91290 0.90118 0.97764 1.19280 0.96763 0.87965 0.98044 1.21141 1.03512 0.90793 1.40771 0.92188 1.25000 0.95407 0.98773 0.95118 1.69969 1.22348 1.16850 1.44014 0.86481 0.81269 0.81551 0.78385 1.19613 1.20925 1.20992 0.87916 0.91428 0.91707 0.90298 0.89366 0.90080 0.90139 0.89292 0.90219 0.74944 0.92976 0.91290 0.95576 0.95749 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.86 10.57 -39.25 -0.41 -4.28 16 3 C 0.46 5.97 7.25 36.00 0.26 6.23 16 4 O -0.48 -7.80 15.17 -18.75 -0.28 -8.08 16 5 C -0.07 -0.72 2.92 -90.07 -0.26 -0.98 16 6 H 0.12 1.13 7.81 -51.93 -0.41 0.72 16 7 C -0.10 -0.81 6.32 -24.70 -0.16 -0.96 16 8 C -0.12 -0.96 6.83 -25.08 -0.17 -1.14 16 9 C -0.09 -0.95 6.39 -25.61 -0.16 -1.11 16 10 C -0.60 -7.51 2.91 -25.61 -0.07 -7.58 16 11 H 0.16 2.09 6.85 -51.93 -0.36 1.74 16 12 S 2.61 41.90 4.52 -107.50 -0.49 41.41 16 13 O -0.95 -18.95 17.50 -57.54 -1.01 -19.96 16 14 O -0.96 -16.28 17.74 -57.54 -1.02 -17.30 16 15 N -1.11 -18.90 5.84 -10.61 -0.06 -18.96 16 16 C 0.12 2.34 6.07 -4.04 -0.02 2.32 16 17 C 0.02 0.45 5.12 -27.88 -0.14 0.31 16 18 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 22 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.80 7.38 -51.93 -0.38 0.42 16 35 H 0.42 6.57 8.62 -34.47 -0.30 6.27 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.46 7.69 -51.93 -0.40 1.06 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -35.40 348.26 -8.42 -43.82 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.03 Total: 2.04 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -0.08 Total: -14.78 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.67 Total: -44.49 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -2.73 Total: -49.62 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 41.90 SS G_CDS: -0.49 Total: 41.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.40 -8.42 -43.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234577790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.976 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds