Wall clock time and date at job start Fri Apr 10 2020 14:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00293 * 2 1 4 4 O 1.20827 * 119.99437 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00247 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.54041 * 302.61495 * 5 3 2 7 7 C 1.54965 * 110.52983 * 65.24738 * 5 3 2 8 8 C 1.54886 * 102.77945 * 156.56536 * 7 5 3 9 9 C 1.54259 * 104.19873 * 322.08197 * 8 7 5 10 10 C 1.53885 * 106.59771 * 23.61129 * 9 8 7 11 11 H 1.08995 * 110.02949 * 240.66607 * 10 9 8 12 12 S 1.81399 * 110.03355 * 119.28420 * 10 9 8 13 13 O 1.42095 * 110.53985 * 173.72007 * 12 10 9 14 14 O 1.42104 * 110.54031 * 310.46815 * 12 10 9 15 15 N 1.65596 * 104.44973 * 62.09122 * 12 10 9 16 16 C 1.46502 * 119.99908 * 64.99928 * 15 12 10 17 17 C 1.53006 * 109.47246 * 164.99647 * 16 15 12 18 18 C 1.50700 * 109.47038 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00123 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99837 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99943 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47044 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46997 * 119.99377 * 22 20 18 25 25 H 1.48502 * 109.46936 * 239.99680 * 22 20 18 26 26 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46625 * 299.99911 * 1 2 3 28 28 H 1.08997 * 109.46997 * 59.99911 * 1 2 3 29 29 H 1.09001 * 110.71767 * 38.24976 * 7 5 3 30 30 H 1.09004 * 110.92113 * 274.97312 * 7 5 3 31 31 H 1.08999 * 110.48720 * 203.40073 * 8 7 5 32 32 H 1.09001 * 110.48540 * 80.76024 * 8 7 5 33 33 H 1.09000 * 110.03620 * 264.33183 * 9 8 7 34 34 H 1.09000 * 110.07718 * 142.91274 * 9 8 7 35 35 H 0.96997 * 120.00299 * 244.99640 * 15 12 10 36 36 H 1.09001 * 109.47281 * 285.00125 * 16 15 12 37 37 H 1.09001 * 109.46937 * 44.99997 * 16 15 12 38 38 H 1.08993 * 109.46809 * 300.00164 * 17 16 15 39 39 H 1.08993 * 109.46597 * 60.00211 * 17 16 15 40 40 H 0.96997 * 120.00118 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9767 0.7456 0.8606 7 6 4.1414 0.6962 -1.3170 8 6 5.5253 1.3842 -1.4181 9 6 5.2748 2.8159 -0.9014 10 6 4.0299 2.7462 0.0005 11 1 3.2429 3.3856 -0.3993 12 16 4.4543 3.2641 1.6864 13 8 3.2868 3.3427 2.4926 14 8 5.6139 2.5802 2.1411 15 7 4.9453 4.8373 1.5242 16 6 3.9923 5.8607 1.0876 17 6 4.5683 7.2491 1.3735 18 6 3.5877 8.3019 0.9249 19 1 2.6479 8.0099 0.4800 20 6 3.8908 9.6377 1.0815 21 7 5.0355 9.9932 1.6228 22 14 2.6757 10.9427 0.5249 23 1 1.4727 10.2869 -0.0476 24 1 2.2790 11.7776 1.6872 25 1 3.3098 11.8011 -0.5077 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.5121 0.9678 -2.1645 30 1 4.2520 -0.3863 -1.2511 31 1 5.8657 1.4063 -2.4533 32 1 6.2526 0.8729 -0.7873 33 1 5.0914 3.4886 -1.7393 34 1 6.1336 3.1619 -0.3262 35 1 5.8638 5.0811 1.7182 36 1 3.8110 5.7557 0.0179 37 1 3.0542 5.7381 1.6289 38 1 4.7495 7.3540 2.4431 39 1 5.5064 7.3717 0.8322 40 1 5.2490 10.9330 1.7327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234577790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:31 Heat of formation + Delta-G solvation = -200.771086 kcal Electronic energy + Delta-G solvation = -23895.375786 eV Core-core repulsion = 20221.753881 eV Total energy + Delta-G solvation = -3673.621905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87111 -39.04322 -38.29353 -37.49490 -37.19148 -37.01338 -34.75749 -31.30663 -30.90408 -30.23994 -28.36087 -26.43754 -24.01030 -23.01789 -21.93549 -21.58564 -20.20693 -19.44529 -18.68688 -18.25506 -18.06300 -17.86699 -17.40229 -17.07014 -16.47111 -15.79186 -15.62105 -15.44722 -15.30828 -14.79230 -14.43350 -14.25753 -13.95009 -13.45417 -13.40702 -13.28921 -13.27070 -13.20931 -13.20410 -13.00770 -12.61898 -12.43885 -12.39634 -12.31393 -12.14761 -11.89458 -11.80018 -11.57624 -11.51592 -11.34671 -11.28547 -10.62487 -10.30598 -8.21877 -6.32553 -0.86426 0.95750 1.41429 1.42587 1.47446 1.55493 1.65080 2.41814 2.60224 2.86627 3.02536 3.12943 3.41479 3.59924 3.81266 4.02104 4.12640 4.16552 4.20606 4.27034 4.29541 4.33519 4.50807 4.62947 4.67971 4.80033 4.87442 4.91502 4.94204 5.06524 5.16783 5.22338 5.36493 5.48301 5.61973 5.79972 6.01966 6.22063 6.52019 6.82969 7.36761 8.90423 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.003906 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.062165 B = 7167.323673 C = 7792.403849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.352 6.352 3 C 0.461 3.539 4 O -0.526 6.526 5 C -0.076 4.076 6 H 0.129 0.871 7 C -0.094 4.094 8 C -0.120 4.120 9 C -0.102 4.102 10 C -0.576 4.576 11 H 0.154 0.846 12 S 2.609 3.391 13 O -0.997 6.997 14 O -0.974 6.974 15 N -1.111 6.111 16 C 0.132 3.868 17 C 0.021 3.979 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.965 3.035 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.275 1.275 26 H 0.140 0.860 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.420 0.580 36 H 0.076 0.924 37 H 0.054 0.946 38 H -0.004 1.004 39 H 0.015 0.985 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 -23.482 -9.545 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.304 3.696 4 O -0.414 6.414 5 C -0.097 4.097 6 H 0.146 0.854 7 C -0.132 4.132 8 C -0.158 4.158 9 C -0.141 4.141 10 C -0.688 4.688 11 H 0.172 0.828 12 S 2.705 3.295 13 O -0.987 6.987 14 O -0.964 6.964 15 N -0.871 5.871 16 C 0.006 3.994 17 C -0.017 4.017 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.790 3.210 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.201 1.201 26 H 0.158 0.842 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.015 0.985 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.401 -23.570 -8.690 25.235 hybrid contribution -0.570 1.621 -0.139 1.724 sum -2.971 -21.949 -8.829 23.843 Atomic orbital electron populations 1.23649 0.74494 1.06142 1.02620 1.86466 1.25133 1.31638 1.83526 1.23736 0.92232 0.81783 0.71878 1.90724 1.67558 1.37372 1.45789 1.21796 0.87498 0.93923 1.06439 0.85377 1.22553 0.96412 1.02237 0.91951 1.22470 0.96655 0.92730 1.03897 1.22027 0.91786 1.01271 0.98998 1.31043 1.10294 1.04887 1.22581 0.82848 1.04926 0.73467 0.73227 0.77892 1.93551 1.52762 1.85864 1.66524 1.93549 1.48972 1.73707 1.80206 1.55318 1.21752 1.24639 1.85381 1.21308 0.90785 0.88346 0.98973 1.19147 0.96270 0.90487 0.95840 1.21590 1.04150 0.91853 1.40730 0.91691 1.25914 0.97229 1.01203 0.95118 1.70087 1.24218 1.17511 1.45133 0.85395 0.79059 0.78546 0.78021 1.18632 1.20699 1.20066 0.84215 0.92550 0.91517 0.89758 0.86737 0.87672 0.89368 0.88054 0.90270 0.74460 0.90594 0.92769 0.98533 0.96687 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -7.04 10.57 -51.38 -0.54 -7.58 16 3 C 0.46 11.43 7.25 71.23 0.52 11.94 16 4 O -0.53 -16.93 15.17 21.96 0.33 -16.60 16 5 C -0.08 -1.53 2.92 -10.44 -0.03 -1.56 16 6 H 0.13 2.27 7.81 -2.39 -0.02 2.25 16 7 C -0.09 -1.15 6.32 31.91 0.20 -0.95 16 8 C -0.12 -1.41 6.83 31.67 0.22 -1.20 16 9 C -0.10 -1.81 6.39 31.32 0.20 -1.61 16 10 C -0.58 -13.75 2.91 31.32 0.09 -13.66 16 11 H 0.15 3.95 6.85 -2.39 -0.02 3.94 16 12 S 2.61 84.42 4.52 -56.49 -0.26 84.17 16 13 O -1.00 -41.13 17.50 -127.65 -2.23 -43.36 16 14 O -0.97 -32.65 17.74 -127.65 -2.26 -34.92 16 15 N -1.11 -38.58 5.84 -187.47 -1.09 -39.68 16 16 C 0.13 5.40 6.07 86.38 0.52 5.92 16 17 C 0.02 1.09 5.12 29.85 0.15 1.24 16 18 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 19 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 20 C 0.00 0.21 5.46 84.65 0.46 0.67 16 21 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 22 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 26 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.08 0.98 8.05 -2.39 -0.02 0.97 16 30 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.44 7.38 -2.39 -0.02 1.42 16 35 H 0.42 13.63 8.62 -96.75 -0.83 12.80 16 36 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.05 2.37 7.69 -2.39 -0.02 2.35 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -77.83 348.26 0.23 -77.60 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.21 Total: 17.57 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 3.76 Total: -27.83 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -0.81 Total: -94.95 kcal Atomic # 8 Polarization: -97.75 SS G_CDS: -4.71 Total: -102.46 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 84.42 SS G_CDS: -0.26 Total: 84.17 kcal Total: -77.83 0.23 -77.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234577790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.171 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds