Wall clock time and date at job start Fri Apr 10 2020 14:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99743 * 2 1 4 4 O 1.20820 * 120.00069 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99659 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47517 * 300.00007 * 5 3 2 7 7 N 1.46507 * 109.46928 * 180.02562 * 5 3 2 8 8 C 1.34773 * 119.99831 * 85.00029 * 7 5 3 9 9 O 1.21682 * 120.00323 * 0.02562 * 8 7 5 10 10 C 1.46381 * 119.99716 * 179.97438 * 8 7 5 11 11 H 1.07996 * 119.99796 * 0.02562 * 10 8 7 12 12 C 1.40052 * 119.99998 * 180.02562 * 10 8 7 13 13 N 1.30679 * 119.99702 * 359.97438 * 12 10 8 14 14 Si 1.86792 * 120.00039 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47281 * 59.99943 * 14 12 10 16 16 H 1.48498 * 109.47095 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46883 * 299.99742 * 14 12 10 18 18 C 1.50696 * 109.47214 * 60.00307 * 5 3 2 19 19 C 1.38293 * 120.11375 * 80.01631 * 18 5 3 20 20 C 1.37938 * 120.34482 * 179.78957 * 19 18 5 21 21 C 1.39277 * 120.24365 * 0.04265 * 20 19 18 22 22 C 1.38884 * 118.87920 * 0.29091 * 21 20 19 23 23 C 1.37741 * 120.78134 * 359.52138 * 22 21 20 24 24 C 1.51638 * 107.04617 * 179.48750 * 22 21 20 25 25 C 1.54706 * 101.95770 * 344.59228 * 24 22 21 26 26 O 1.36143 * 129.88799 * 180.96592 * 21 20 19 27 27 H 1.09003 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47583 * 300.00011 * 1 2 3 29 29 H 1.08997 * 109.47012 * 60.00500 * 1 2 3 30 30 H 0.96999 * 119.99564 * 265.00239 * 7 5 3 31 31 H 0.96994 * 119.99381 * 179.97438 * 13 12 10 32 32 H 1.07991 * 119.82735 * 359.81614 * 19 18 5 33 33 H 1.08001 * 119.87563 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.00875 * 180.31553 * 23 22 21 35 35 H 1.09002 * 110.93994 * 102.77103 * 24 22 21 36 36 H 1.08997 * 110.93769 * 226.42283 * 24 22 21 37 37 H 1.09003 * 110.74785 * 143.62371 * 25 24 22 38 38 H 1.08994 * 110.75591 * 266.97977 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 7 3.9816 2.6798 0.0011 8 6 4.0747 3.3546 1.1640 9 8 3.8142 2.7968 2.2136 10 6 4.4903 4.7581 1.1645 11 1 4.7218 5.2530 0.2330 12 6 4.5875 5.4592 2.3731 13 7 4.3067 4.8604 3.5002 14 14 5.1171 7.2505 2.3737 15 1 4.1576 8.0506 1.5710 16 1 5.1399 7.7594 3.7685 17 1 6.4743 7.3656 1.7820 18 6 4.1056 0.5916 -1.2295 19 6 4.1073 1.2510 -2.4451 20 6 4.6038 0.6317 -3.5732 21 6 5.1072 -0.6647 -3.4977 22 6 5.0937 -1.3192 -2.2728 23 6 4.6010 -0.6975 -1.1467 24 6 5.6839 -2.6977 -2.4988 25 6 5.6308 -2.8202 -4.0401 26 8 5.6539 -1.4470 -4.4686 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 4.1896 3.1243 -0.8356 31 1 4.3745 5.3459 4.3371 32 1 3.7183 2.2563 -2.5114 33 1 4.6018 1.1539 -4.5186 34 1 4.6011 -1.2163 -0.1995 35 1 6.7118 -2.7451 -2.1393 36 1 5.0720 -3.4657 -2.0258 37 1 6.5024 -3.3569 -4.4150 38 1 4.7095 -3.3085 -4.3573 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274813773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:06 Heat of formation + Delta-G solvation = -120.559969 kcal Electronic energy + Delta-G solvation = -24787.155733 eV Core-core repulsion = 20981.568091 eV Total energy + Delta-G solvation = -3805.587641 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18580 -40.07797 -38.08171 -36.98055 -35.82453 -33.62619 -32.74094 -32.36439 -30.45691 -29.23389 -28.03562 -26.78462 -25.24596 -23.60505 -22.14135 -21.67762 -20.72649 -19.40056 -17.65282 -17.40460 -17.34461 -16.51597 -16.27949 -16.19092 -15.97228 -15.35758 -14.85454 -14.30833 -14.13705 -13.83875 -13.50701 -13.30385 -13.12972 -12.99595 -12.74848 -12.57879 -12.28966 -12.04550 -11.92758 -11.66431 -11.47359 -11.15648 -10.98127 -10.93723 -10.77088 -10.47933 -10.40186 -10.26533 -10.00975 -8.88828 -8.85878 -8.11790 -7.82589 -7.68493 -6.21254 -4.66466 1.23964 1.34637 2.76661 3.04242 3.16221 3.18230 3.21963 3.24363 3.66233 4.10584 4.27721 4.40639 4.57098 4.76561 4.78429 4.81681 4.88482 5.14712 5.21323 5.29704 5.34385 5.39066 5.42040 5.51068 5.57694 5.64592 5.70811 5.78826 5.89304 6.09019 6.21187 6.34132 6.51246 6.60172 6.79511 7.11787 7.42001 7.71868 7.90336 8.25257 8.33922 9.00054 9.38480 10.53959 10.72374 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.004072 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.220232 B = 6874.812192 C = 7880.582209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.448 3.552 4 O -0.486 6.486 5 C 0.215 3.785 6 H 0.122 0.878 7 N -0.738 5.738 8 C 0.559 3.441 9 O -0.576 6.576 10 C -0.538 4.538 11 H 0.069 0.931 12 C 0.087 3.913 13 N -0.766 5.766 14 Si 0.911 3.089 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.267 1.267 18 C -0.106 4.106 19 C -0.071 4.071 20 C -0.134 4.134 21 C 0.103 3.897 22 C -0.175 4.175 23 C -0.043 4.043 24 C -0.109 4.109 25 C 0.052 3.948 26 O -0.307 6.307 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.387 0.613 31 H 0.270 0.730 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -14.535 -13.207 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.287 3.713 4 O -0.370 6.370 5 C 0.105 3.895 6 H 0.140 0.860 7 N -0.394 5.394 8 C 0.365 3.635 9 O -0.459 6.459 10 C -0.574 4.574 11 H 0.088 0.912 12 C -0.133 4.133 13 N -0.394 5.394 14 Si 0.735 3.265 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.107 4.107 19 C -0.089 4.089 20 C -0.152 4.152 21 C 0.058 3.942 22 C -0.176 4.176 23 C -0.062 4.062 24 C -0.146 4.146 25 C -0.023 4.023 26 O -0.221 6.221 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.109 -14.550 -12.412 19.125 hybrid contribution -0.019 1.035 -0.244 1.064 sum -0.129 -13.515 -12.657 18.516 Atomic orbital electron populations 1.23140 0.77629 1.02826 1.02256 1.86520 1.22494 1.34367 1.84720 1.24878 0.92882 0.81220 0.72295 1.90653 1.66423 1.36316 1.43624 1.18736 0.85354 0.87962 0.97421 0.86011 1.46216 1.73813 1.08149 1.11188 1.18276 0.77201 0.87205 0.80859 1.90602 1.54620 1.69855 1.30777 1.20771 1.48610 0.94196 0.93869 0.91233 1.25708 0.93093 0.99510 0.94958 1.70008 1.34596 1.36583 0.98213 0.86383 0.79759 0.82537 0.77796 1.19223 1.20544 1.19194 1.19525 1.02387 0.94625 0.94180 1.20771 0.97334 0.99784 0.91039 1.20156 1.02660 0.92793 0.99635 1.19557 0.94418 0.93020 0.87242 1.20640 1.05547 0.97508 0.93928 1.20121 0.95248 0.93279 0.97520 1.21769 1.02267 0.94580 0.95939 1.23834 1.03120 0.81694 0.93680 1.86835 1.76280 1.17826 1.41205 0.88737 0.92122 0.92459 0.77897 0.91972 0.84746 0.85253 0.85085 0.89122 0.88999 0.87767 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.36 -6.28 10.48 -39.25 -0.41 -6.69 16 3 C 0.45 9.19 7.27 36.01 0.26 9.45 16 4 O -0.49 -11.61 16.07 -18.75 -0.30 -11.91 16 5 C 0.21 4.23 2.69 -70.23 -0.19 4.04 16 6 H 0.12 2.52 7.44 -51.93 -0.39 2.14 16 7 N -0.74 -16.71 4.55 -57.48 -0.26 -16.97 16 8 C 0.56 15.97 7.58 -12.99 -0.10 15.87 16 9 O -0.58 -18.56 14.68 5.20 0.08 -18.48 16 10 C -0.54 -15.30 9.54 -35.63 -0.34 -15.64 16 11 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 12 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 13 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 14 Si 0.91 20.30 29.56 -169.99 -5.02 15.28 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 18 C -0.11 -1.67 4.88 -104.56 -0.51 -2.19 16 19 C -0.07 -1.02 9.03 -39.67 -0.36 -1.38 16 20 C -0.13 -1.76 10.06 -39.31 -0.40 -2.15 16 21 C 0.10 1.35 7.04 -38.96 -0.27 1.08 16 22 C -0.18 -2.19 6.27 -104.10 -0.65 -2.84 16 23 C -0.04 -0.59 9.66 -39.72 -0.38 -0.98 16 24 C -0.11 -0.95 7.11 -26.52 -0.19 -1.14 16 25 C 0.05 0.42 8.01 38.06 0.30 0.73 16 26 O -0.31 -3.73 11.11 -20.19 -0.22 -3.96 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.39 7.76 6.86 -40.82 -0.28 7.48 16 31 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 32 H 0.13 1.87 6.92 -52.49 -0.36 1.50 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.13 1.61 8.04 -52.49 -0.42 1.19 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -37.29 335.25 -6.67 -43.96 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.38 Total: 7.33 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -1.85 Total: 8.78 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.40 Total: -39.36 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.86 Total: -41.04 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.29 -6.67 -43.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274813773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.595 kcal (2) G-P(sol) polarization free energy of solvation -37.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds