Wall clock time and date at job start Fri Apr 10 2020 14:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99743 * 2 1 4 4 O 1.20820 * 120.00069 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99659 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47517 * 300.00007 * 5 3 2 7 7 N 1.46507 * 109.46928 * 180.02562 * 5 3 2 8 8 C 1.34773 * 119.99831 * 85.00029 * 7 5 3 9 9 O 1.21682 * 120.00323 * 0.02562 * 8 7 5 10 10 C 1.46381 * 119.99716 * 179.97438 * 8 7 5 11 11 H 1.07996 * 119.99796 * 0.02562 * 10 8 7 12 12 C 1.40052 * 119.99998 * 180.02562 * 10 8 7 13 13 N 1.30679 * 119.99702 * 359.97438 * 12 10 8 14 14 Si 1.86792 * 120.00039 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47281 * 59.99943 * 14 12 10 16 16 H 1.48498 * 109.47095 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46883 * 299.99742 * 14 12 10 18 18 C 1.50696 * 109.47214 * 60.00307 * 5 3 2 19 19 C 1.38293 * 120.11375 * 80.01631 * 18 5 3 20 20 C 1.37938 * 120.34482 * 179.78957 * 19 18 5 21 21 C 1.39277 * 120.24365 * 0.04265 * 20 19 18 22 22 C 1.38884 * 118.87920 * 0.29091 * 21 20 19 23 23 C 1.37741 * 120.78134 * 359.52138 * 22 21 20 24 24 C 1.51638 * 107.04617 * 179.48750 * 22 21 20 25 25 C 1.54706 * 101.95770 * 344.59228 * 24 22 21 26 26 O 1.36143 * 129.88799 * 180.96592 * 21 20 19 27 27 H 1.09003 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47583 * 300.00011 * 1 2 3 29 29 H 1.08997 * 109.47012 * 60.00500 * 1 2 3 30 30 H 0.96999 * 119.99564 * 265.00239 * 7 5 3 31 31 H 0.96994 * 119.99381 * 179.97438 * 13 12 10 32 32 H 1.07991 * 119.82735 * 359.81614 * 19 18 5 33 33 H 1.08001 * 119.87563 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.00875 * 180.31553 * 23 22 21 35 35 H 1.09002 * 110.93994 * 102.77103 * 24 22 21 36 36 H 1.08997 * 110.93769 * 226.42283 * 24 22 21 37 37 H 1.09003 * 110.74785 * 143.62371 * 25 24 22 38 38 H 1.08994 * 110.75591 * 266.97977 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8908 7 7 3.9816 2.6798 0.0011 8 6 4.0747 3.3546 1.1640 9 8 3.8142 2.7968 2.2136 10 6 4.4903 4.7581 1.1645 11 1 4.7218 5.2530 0.2330 12 6 4.5875 5.4592 2.3731 13 7 4.3067 4.8604 3.5002 14 14 5.1171 7.2505 2.3737 15 1 4.1576 8.0506 1.5710 16 1 5.1399 7.7594 3.7685 17 1 6.4743 7.3656 1.7820 18 6 4.1056 0.5916 -1.2295 19 6 4.1073 1.2510 -2.4451 20 6 4.6038 0.6317 -3.5732 21 6 5.1072 -0.6647 -3.4977 22 6 5.0937 -1.3192 -2.2728 23 6 4.6010 -0.6975 -1.1467 24 6 5.6839 -2.6977 -2.4988 25 6 5.6308 -2.8202 -4.0401 26 8 5.6539 -1.4470 -4.4686 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 4.1896 3.1243 -0.8356 31 1 4.3745 5.3459 4.3371 32 1 3.7183 2.2563 -2.5114 33 1 4.6018 1.1539 -4.5186 34 1 4.6011 -1.2163 -0.1995 35 1 6.7118 -2.7451 -2.1393 36 1 5.0720 -3.4657 -2.0258 37 1 6.5024 -3.3569 -4.4150 38 1 4.7095 -3.3085 -4.3573 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274813773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:05 Heat of formation + Delta-G solvation = -147.023178 kcal Electronic energy + Delta-G solvation = -24788.303264 eV Core-core repulsion = 20981.568091 eV Total energy + Delta-G solvation = -3806.735172 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.19858 -41.56982 -39.63147 -38.54629 -37.46665 -35.36338 -34.51144 -33.61274 -31.95324 -30.16865 -29.32520 -28.56292 -26.88912 -24.49060 -23.22975 -22.79181 -22.43703 -21.10186 -19.52418 -18.80277 -18.37810 -17.84692 -17.75314 -17.51243 -17.27291 -17.00974 -16.32848 -15.91359 -15.45292 -15.07580 -14.95163 -14.55910 -14.35883 -14.23969 -14.11997 -13.88750 -13.59420 -13.54892 -13.19891 -12.98940 -12.75259 -12.73215 -12.66313 -12.50951 -12.05909 -11.98625 -11.82403 -11.79798 -11.51589 -10.93112 -10.00810 -9.91364 -9.76797 -9.11707 -8.32104 -6.89060 0.14880 0.29848 1.14404 1.39586 1.42703 1.54794 1.63422 2.23393 2.29998 2.47200 2.57567 3.02779 3.38647 3.52529 3.59583 3.74401 3.93525 4.00425 4.05871 4.22330 4.26320 4.28303 4.28913 4.38199 4.57805 4.62074 4.68156 4.88890 4.93447 5.05967 5.15490 5.26927 5.29843 5.32580 5.42930 5.52550 5.80512 5.93327 6.16243 6.18611 6.73173 6.83635 7.37837 8.40237 8.62782 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.004072 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.220232 B = 6874.812192 C = 7880.582209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.451 3.549 4 O -0.529 6.529 5 C 0.217 3.783 6 H 0.105 0.895 7 N -0.729 5.729 8 C 0.545 3.455 9 O -0.625 6.625 10 C -0.569 4.569 11 H 0.089 0.911 12 C 0.029 3.971 13 N -0.818 5.818 14 Si 1.000 3.000 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.250 1.250 18 C -0.123 4.123 19 C -0.078 4.078 20 C -0.136 4.136 21 C 0.100 3.900 22 C -0.176 4.176 23 C -0.048 4.048 24 C -0.106 4.106 25 C 0.047 3.953 26 O -0.320 6.320 27 H 0.141 0.859 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.399 0.601 31 H 0.276 0.724 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -15.484 -15.209 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.293 3.707 4 O -0.417 6.417 5 C 0.108 3.892 6 H 0.123 0.877 7 N -0.384 5.384 8 C 0.351 3.649 9 O -0.511 6.511 10 C -0.606 4.606 11 H 0.107 0.893 12 C -0.186 4.186 13 N -0.448 5.448 14 Si 0.819 3.181 15 H -0.182 1.182 16 H -0.197 1.197 17 H -0.174 1.174 18 C -0.124 4.124 19 C -0.096 4.096 20 C -0.155 4.155 21 C 0.054 3.946 22 C -0.177 4.177 23 C -0.066 4.066 24 C -0.143 4.143 25 C -0.027 4.027 26 O -0.235 6.235 27 H 0.159 0.841 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.744 -15.560 -14.483 21.270 hybrid contribution -0.327 1.118 0.277 1.197 sum 0.417 -14.443 -14.205 20.262 Atomic orbital electron populations 1.23536 0.75268 1.05804 1.01972 1.86492 1.24704 1.32315 1.83847 1.24934 0.93187 0.81477 0.71131 1.90626 1.67369 1.37772 1.45941 1.18755 0.85321 0.86233 0.98927 0.87706 1.45783 1.72963 1.09485 1.10138 1.18600 0.76852 0.87926 0.81540 1.90548 1.56723 1.70998 1.32872 1.21357 1.49122 0.94794 0.95284 0.89327 1.26984 0.92291 1.05343 0.94003 1.70174 1.35926 1.39346 0.99307 0.85044 0.79948 0.74846 0.78297 1.18184 1.19740 1.17409 1.19247 1.04641 0.95690 0.92829 1.20761 0.97905 0.99853 0.91108 1.20308 1.02186 0.93191 0.99790 1.19768 0.93717 0.93144 0.87927 1.21005 1.04430 0.99299 0.92968 1.20212 0.95130 0.92611 0.98674 1.21913 1.02978 0.92723 0.96664 1.24197 1.05394 0.79931 0.93188 1.86827 1.75830 1.19593 1.41216 0.84073 0.93344 0.91917 0.76511 0.91455 0.84958 0.83396 0.84137 0.88012 0.86872 0.84901 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.38 10.48 -51.41 -0.54 -12.92 16 3 C 0.45 19.19 7.27 71.24 0.52 19.70 16 4 O -0.53 -26.37 16.07 21.98 0.35 -26.02 16 5 C 0.22 8.90 2.69 43.50 0.12 9.01 16 6 H 0.11 4.63 7.44 -2.39 -0.02 4.62 16 7 N -0.73 -34.44 4.55 -454.00 -2.07 -36.50 16 8 C 0.55 32.53 7.58 86.36 0.65 33.18 16 9 O -0.62 -42.41 14.68 -4.29 -0.06 -42.47 16 10 C -0.57 -33.15 9.54 24.83 0.24 -32.92 16 11 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 12 C 0.03 1.66 5.50 85.30 0.47 2.13 16 13 N -0.82 -50.88 11.83 21.84 0.26 -50.62 16 14 Si 1.00 41.78 29.56 68.60 2.03 43.81 16 15 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 18 C -0.12 -3.93 4.88 -19.83 -0.10 -4.03 16 19 C -0.08 -2.25 9.03 22.21 0.20 -2.05 16 20 C -0.14 -3.42 10.06 22.45 0.23 -3.19 16 21 C 0.10 2.44 7.04 22.67 0.16 2.60 16 22 C -0.18 -4.04 6.27 -19.53 -0.12 -4.16 16 23 C -0.05 -1.29 9.66 22.18 0.21 -1.07 16 24 C -0.11 -1.50 7.11 30.73 0.22 -1.28 16 25 C 0.05 0.59 8.01 72.56 0.58 1.17 16 26 O -0.32 -6.89 11.11 -95.18 -1.06 -7.95 16 27 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.40 16.59 6.86 -92.71 -0.64 15.95 16 31 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 32 H 0.13 3.75 6.92 -2.92 -0.02 3.73 16 33 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.14 3.39 8.04 -2.91 -0.02 3.37 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -84.87 335.25 3.96 -80.91 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.47 Total: 30.73 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 4.57 Total: 21.03 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -1.81 Total: -87.13 kcal Atomic # 8 Polarization: -88.05 SS G_CDS: -1.31 Total: -89.35 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -84.87 3.96 -80.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274813773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.108 kcal (2) G-P(sol) polarization free energy of solvation -84.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds