Wall clock time and date at job start Fri Apr 10 2020 14:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34237 * 116.99464 * 2 1 4 4 O 1.20821 * 119.99950 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99730 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.87421 * 31.96540 * 5 3 2 7 7 C 1.54325 * 109.88292 * 270.79399 * 5 3 2 8 8 C 1.55155 * 102.94574 * 218.39119 * 7 5 3 9 9 C 1.54689 * 101.67440 * 35.33002 * 8 7 5 10 10 N 1.47019 * 109.88593 * 152.98475 * 5 3 2 11 11 S 1.65602 * 125.64566 * 298.32258 * 10 5 3 12 12 O 1.42101 * 104.27399 * 148.17127 * 11 10 5 13 13 O 1.42100 * 104.27763 * 20.31827 * 11 10 5 14 14 C 1.81399 * 104.44935 * 264.24089 * 11 10 5 15 15 C 1.52999 * 109.47114 * 180.20735 * 14 11 10 16 16 C 1.52998 * 109.46820 * 180.02562 * 15 14 11 17 17 C 1.50705 * 109.46866 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99731 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99955 * 179.97438 * 17 16 15 20 20 N 1.31503 * 120.00166 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99708 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46733 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47339 * 299.99879 * 21 19 17 24 24 H 1.48496 * 109.47381 * 60.00385 * 21 19 17 25 25 H 1.09001 * 109.46962 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47453 * 300.00017 * 1 2 3 27 27 H 1.09006 * 109.47473 * 60.00291 * 1 2 3 28 28 H 1.08999 * 110.71780 * 336.75364 * 7 5 3 29 29 H 1.09003 * 110.71954 * 99.84921 * 7 5 3 30 30 H 1.08999 * 111.00678 * 153.57391 * 8 7 5 31 31 H 1.08999 * 111.00244 * 277.43172 * 8 7 5 32 32 H 1.08998 * 110.39179 * 204.36621 * 9 8 7 33 33 H 1.09002 * 110.23684 * 82.11983 * 9 8 7 34 34 H 1.09003 * 109.46607 * 60.21336 * 14 11 10 35 35 H 1.08996 * 109.47150 * 300.21179 * 14 11 10 36 36 H 1.09003 * 109.46893 * 60.00776 * 15 14 11 37 37 H 1.08999 * 109.47508 * 300.00767 * 15 14 11 38 38 H 1.08998 * 109.47227 * 60.00931 * 16 15 14 39 39 H 1.08996 * 109.47484 * 299.99827 * 16 15 14 40 40 H 0.96999 * 120.00675 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2093 -0.0005 5 6 3.5662 1.2751 -0.0006 6 1 3.9816 0.4261 -0.5436 7 6 4.0919 1.2822 1.4503 8 6 5.2737 2.2855 1.3869 9 6 4.7498 3.3220 0.3651 10 7 4.0008 2.5314 -0.6285 11 16 3.7041 2.9807 -2.1945 12 8 3.5987 4.3967 -2.1388 13 8 2.5983 2.1786 -2.5858 14 6 5.1986 2.4887 -3.0974 15 6 5.0477 2.8601 -4.5740 16 6 6.3080 2.4445 -5.3356 17 6 6.1597 2.8108 -6.7899 18 1 5.2570 3.2923 -7.1361 19 6 7.1768 2.5323 -7.6781 20 7 8.2760 1.9466 -7.2564 21 14 6.9932 2.9871 -9.4806 22 1 8.2163 2.5837 -10.2199 23 1 5.8161 2.2841 -10.0512 24 1 6.8011 4.4544 -9.6039 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.3229 1.6351 2.1374 29 1 4.4396 0.2903 1.7394 30 1 5.4478 2.7463 2.3592 31 1 6.1780 1.8012 1.0182 32 1 5.5822 3.8397 -0.1116 33 1 4.0897 4.0363 0.8573 34 1 5.3400 1.4118 -3.0063 35 1 6.0623 3.0054 -2.6792 36 1 4.9063 3.9370 -4.6652 37 1 4.1839 2.3434 -4.9922 38 1 6.4490 1.3675 -5.2445 39 1 7.1720 2.9609 -4.9175 40 1 8.9915 1.7503 -7.8813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330692287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:44 Heat of formation + Delta-G solvation = -189.262780 kcal Electronic energy + Delta-G solvation = -23814.271731 eV Core-core repulsion = 20141.148863 eV Total energy + Delta-G solvation = -3673.122867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.74944 -39.26824 -38.34562 -37.39350 -37.15370 -36.50810 -34.19500 -32.06272 -31.19506 -29.69054 -28.41101 -25.69851 -24.58244 -22.77479 -22.32674 -21.94303 -20.07433 -19.16255 -18.90873 -18.56269 -17.56030 -17.46876 -17.26832 -17.04272 -16.48655 -16.26727 -15.77815 -15.01477 -14.77331 -14.50432 -14.43278 -14.19526 -14.10981 -13.75107 -13.55503 -13.32333 -13.27888 -13.09665 -13.02735 -12.79435 -12.75222 -12.74818 -12.67536 -12.18958 -12.13375 -11.87279 -11.82720 -11.79107 -11.47232 -11.41236 -11.15131 -10.57666 -10.17849 -8.23350 -6.34310 -0.97392 1.05980 1.39972 1.42236 1.44541 1.50291 1.75400 2.39375 2.74941 2.88998 3.10190 3.38561 3.55272 3.68254 3.80064 3.89456 4.01400 4.22929 4.26824 4.30135 4.33750 4.52675 4.56207 4.57666 4.66106 4.82135 4.86485 4.90251 4.96528 5.03033 5.10339 5.26693 5.32845 5.37653 5.43371 5.61074 5.77920 6.18647 6.64917 6.80265 7.34854 8.87844 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.003463 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.272359 B = 8082.558107 C = 8549.373321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.445 3.555 4 O -0.536 6.536 5 C 0.151 3.849 6 H 0.138 0.862 7 C -0.106 4.106 8 C -0.115 4.115 9 C 0.101 3.899 10 N -0.998 5.998 11 S 2.622 3.378 12 O -0.985 6.985 13 O -0.986 6.986 14 C -0.596 4.596 15 C -0.108 4.108 16 C 0.034 3.966 17 C -0.557 4.557 18 H 0.057 0.943 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.961 3.039 22 H -0.279 1.279 23 H -0.269 1.269 24 H -0.268 1.268 25 H 0.137 0.863 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 -5.493 22.628 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.287 3.713 4 O -0.425 6.425 5 C 0.043 3.957 6 H 0.155 0.845 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.022 4.022 10 N -0.837 5.837 11 S 2.721 3.279 12 O -0.976 6.976 13 O -0.977 6.977 14 C -0.728 4.728 15 C -0.147 4.147 16 C -0.005 4.005 17 C -0.595 4.595 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.785 3.215 22 H -0.204 1.204 23 H -0.194 1.194 24 H -0.193 1.193 25 H 0.156 0.844 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.693 -4.799 22.205 23.985 hybrid contribution 0.029 0.247 -1.376 1.398 sum -7.663 -4.553 20.829 22.656 Atomic orbital electron populations 1.23532 0.75151 1.05804 1.02059 1.86458 1.24764 1.32451 1.83566 1.24871 0.93669 0.81540 0.71211 1.90640 1.67921 1.37757 1.46205 1.21382 0.84897 0.88768 1.00669 0.84452 1.22718 0.98609 1.04000 0.89150 1.22839 0.97846 0.94816 0.99861 1.22394 0.95151 0.94751 0.89938 1.58530 1.69200 1.29252 1.26705 1.04556 0.76804 0.73494 0.73007 1.93518 1.86990 1.31329 1.85732 1.93514 1.50465 1.71353 1.82349 1.30462 1.20522 1.14090 1.07713 1.21347 1.01363 1.01201 0.90826 1.18946 0.92007 0.95863 0.93658 1.21701 1.02681 1.39972 0.95099 0.92432 1.25886 0.94815 0.94816 1.03733 1.70041 1.07003 1.42797 1.36835 0.85563 0.77799 0.79022 0.79078 1.20404 1.19353 1.19347 0.84447 0.91423 0.93560 0.90510 0.85050 0.86866 0.87790 0.88651 0.91886 0.82855 0.82919 0.91826 0.91769 0.97442 0.97461 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.55 113.37 1.20 1.72 16 2 O -0.36 -8.39 10.57 -51.49 -0.54 -8.94 16 3 C 0.44 12.10 5.60 71.23 0.40 12.50 16 4 O -0.54 -18.81 15.85 25.51 0.40 -18.41 16 5 C 0.15 2.93 3.50 44.59 0.16 3.09 16 6 H 0.14 1.96 8.14 -2.38 -0.02 1.94 16 7 C -0.11 -1.08 6.47 31.78 0.21 -0.88 16 8 C -0.12 -0.95 7.07 31.91 0.23 -0.72 16 9 C 0.10 1.73 6.95 86.78 0.60 2.34 16 10 N -1.00 -23.77 2.99 -488.54 -1.46 -25.23 16 11 S 2.62 85.52 5.51 -56.49 -0.31 85.21 16 12 O -0.99 -38.64 17.70 -127.65 -2.26 -40.90 16 13 O -0.99 -38.35 15.86 -123.30 -1.96 -40.31 16 14 C -0.60 -18.02 6.18 71.98 0.44 -17.58 16 15 C -0.11 -4.47 5.16 30.59 0.16 -4.31 16 16 C 0.03 1.72 4.97 29.85 0.15 1.87 16 17 C -0.56 -31.74 9.11 25.60 0.23 -31.51 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.01 0.35 5.46 84.66 0.46 0.81 16 20 N -0.93 -55.01 13.28 21.45 0.28 -54.73 16 21 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 27 H 0.05 1.06 8.13 -2.38 -0.02 1.04 16 28 H 0.08 0.87 7.84 -2.39 -0.02 0.86 16 29 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 35 H 0.15 3.88 8.14 -2.39 -0.02 3.86 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -84.01 349.67 1.44 -82.58 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.02 Total: 7.24 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 4.23 Total: -32.67 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.17 Total: -79.96 kcal Atomic # 8 Polarization: -104.20 SS G_CDS: -4.36 Total: -108.56 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 85.52 SS G_CDS: -0.31 Total: 85.21 kcal Total: -84.01 1.44 -82.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330692287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.684 kcal (2) G-P(sol) polarization free energy of solvation -84.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds