Wall clock time and date at job start Fri Apr 10 2020 14:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99730 * 2 1 4 4 O 1.20822 * 120.00092 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99722 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.87500 * 300.70081 * 5 3 2 7 7 C 1.54325 * 109.87985 * 61.71536 * 5 3 2 8 8 C 1.55160 * 102.93783 * 141.76235 * 7 5 3 9 9 C 1.54903 * 101.58590 * 324.49848 * 8 7 5 10 10 N 1.47018 * 109.88206 * 179.68423 * 5 3 2 11 11 S 1.65602 * 125.65083 * 61.43558 * 10 5 3 12 12 O 1.42095 * 104.27981 * 206.07268 * 11 10 5 13 13 O 1.42104 * 104.27339 * 333.93275 * 11 10 5 14 14 C 1.81400 * 104.44682 * 89.99970 * 11 10 5 15 15 C 1.53000 * 109.47104 * 180.02562 * 14 11 10 16 16 C 1.53003 * 109.47211 * 180.02562 * 15 14 11 17 17 C 1.50703 * 109.47068 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99703 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99871 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99877 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99813 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47303 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47037 * 119.99923 * 21 19 17 24 24 H 1.48504 * 109.46638 * 239.99062 * 21 19 17 25 25 H 1.08991 * 109.47848 * 300.00322 * 1 2 3 26 26 H 1.09001 * 109.47076 * 60.00690 * 1 2 3 27 27 H 1.09005 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.08993 * 110.72531 * 260.12425 * 7 5 3 29 29 H 1.09000 * 110.72094 * 23.40530 * 7 5 3 30 30 H 1.08995 * 111.00351 * 82.57597 * 8 7 5 31 31 H 1.09001 * 111.00369 * 206.42270 * 8 7 5 32 32 H 1.08995 * 110.36955 * 155.84646 * 9 8 7 33 33 H 1.09007 * 110.37041 * 278.17503 * 9 8 7 34 34 H 1.09002 * 109.47494 * 300.00050 * 14 11 10 35 35 H 1.08998 * 109.47230 * 60.00574 * 14 11 10 36 36 H 1.09008 * 109.47069 * 300.00119 * 15 14 11 37 37 H 1.09000 * 109.47449 * 59.99860 * 15 14 11 38 38 H 1.08995 * 109.46818 * 299.99632 * 16 15 14 39 39 H 1.09000 * 109.47321 * 59.99423 * 16 15 14 40 40 H 0.97009 * 119.99799 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9634 0.7718 0.8823 7 6 4.1268 0.6153 -1.2771 8 6 5.3154 1.5395 -1.6523 9 6 4.7713 2.9295 -1.2384 10 7 3.9932 2.6817 -0.0072 11 16 3.6570 3.7989 1.1681 12 8 3.6996 5.0461 0.4886 13 8 2.4552 3.3298 1.7639 14 6 5.0409 3.6609 2.3328 15 6 4.8437 4.6549 3.4791 16 6 6.0113 4.5390 4.4612 17 6 5.8167 5.5176 5.5906 18 1 4.9475 6.1583 5.6061 19 6 6.7489 5.5955 6.6035 20 7 7.8076 4.8156 6.5842 21 14 6.5074 6.8080 8.0038 22 1 5.2461 7.5630 7.7929 23 1 6.4339 6.0701 9.2904 24 1 7.6506 7.7552 8.0411 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 4.4757 -0.3958 -1.0679 29 1 3.3777 0.6100 -2.0688 30 1 6.2063 1.2822 -1.0795 31 1 5.5168 1.5017 -2.7229 32 1 5.5948 3.6142 -1.0356 33 1 4.1256 3.3321 -2.0189 34 1 5.0792 2.6479 2.7333 35 1 5.9744 3.8827 1.8157 36 1 4.8052 5.6681 3.0789 37 1 3.9102 4.4328 3.9962 38 1 6.0501 3.5259 4.8614 39 1 6.9446 4.7613 3.9439 40 1 8.4633 4.8702 7.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330692289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:46 Heat of formation + Delta-G solvation = -158.587913 kcal Electronic energy + Delta-G solvation = -23845.354939 eV Core-core repulsion = 20173.562233 eV Total energy + Delta-G solvation = -3671.792705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74238 -38.41775 -36.88930 -36.29582 -35.61435 -34.66415 -32.18480 -31.24626 -30.39424 -27.80509 -27.60034 -23.96613 -23.51773 -21.88574 -21.23359 -20.46927 -18.91635 -18.01925 -17.74332 -16.81795 -16.51618 -16.17690 -16.06946 -15.58319 -15.20896 -14.48794 -14.30633 -14.11191 -13.83796 -13.60881 -13.27348 -13.05513 -12.60451 -12.34584 -12.24868 -11.99177 -11.87859 -11.77418 -11.71854 -11.62614 -11.50262 -11.26326 -11.21309 -10.93566 -10.85729 -10.80030 -10.52373 -10.35415 -9.95872 -9.57012 -9.25904 -9.01028 -8.41402 -6.06168 -4.09015 0.39072 2.17641 2.41159 2.81719 3.29447 3.36929 3.42321 3.95692 4.06493 4.13167 4.42640 4.48281 4.56256 4.71832 4.83090 4.97769 5.06943 5.11305 5.12050 5.15559 5.30372 5.30887 5.38789 5.42699 5.48972 5.50342 5.74224 5.84550 5.89776 6.06439 6.28336 6.29357 6.44473 6.86650 7.56539 7.66185 7.70670 7.92079 8.32653 8.97389 9.55784 11.05105 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.003449 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.592212 B = 8115.503860 C = 8525.992988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.437 3.563 4 O -0.467 6.467 5 C 0.163 3.837 6 H 0.115 0.885 7 C -0.113 4.113 8 C -0.131 4.131 9 C 0.118 3.882 10 N -1.000 6.000 11 S 2.609 3.391 12 O -0.952 6.952 13 O -0.937 6.937 14 C -0.611 4.611 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 -13.237 -18.904 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.276 3.724 4 O -0.351 6.351 5 C 0.054 3.946 6 H 0.133 0.867 7 C -0.152 4.152 8 C -0.170 4.170 9 C -0.006 4.006 10 N -0.836 5.836 11 S 2.706 3.294 12 O -0.943 6.943 13 O -0.927 6.927 14 C -0.743 4.743 15 C -0.145 4.145 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.718 -12.324 -18.760 23.736 hybrid contribution 0.316 0.377 1.097 1.202 sum -7.402 -11.947 -17.663 22.573 Atomic orbital electron populations 1.23247 0.76360 1.03408 1.02753 1.86447 1.23395 1.33198 1.84719 1.24103 0.92352 0.81941 0.74018 1.90744 1.66409 1.35989 1.41920 1.20789 0.86946 0.83991 1.02880 0.86698 1.22590 0.98151 0.99789 0.94693 1.22862 0.97902 0.93772 1.02484 1.22111 0.94771 0.97735 0.86022 1.59030 1.67717 1.21367 1.35444 1.05380 0.76682 0.72998 0.74299 1.93557 1.87531 1.40907 1.72304 1.93617 1.41346 1.80190 1.77560 1.30649 1.19087 1.10094 1.14455 1.21508 1.03303 0.95535 0.94169 1.19069 0.91535 0.97638 0.92501 1.21298 1.07548 1.20717 1.06822 0.92302 1.25020 0.95122 0.95992 0.98260 1.69969 1.11212 1.38815 1.33454 0.86496 0.78249 0.81061 0.82003 1.19584 1.20925 1.20927 0.91609 0.92135 0.88198 0.88468 0.90111 0.89687 0.89340 0.89698 0.91001 0.85539 0.85455 0.91597 0.91575 0.96108 0.96085 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.05 10.53 -39.26 -0.41 -4.46 16 3 C 0.44 5.88 6.58 36.01 0.24 6.12 16 4 O -0.47 -8.18 13.41 -26.61 -0.36 -8.54 16 5 C 0.16 1.70 3.57 -68.11 -0.24 1.46 16 6 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.11 -0.74 6.44 -24.89 -0.16 -0.90 16 8 C -0.13 -0.78 7.09 -24.58 -0.17 -0.95 16 9 C 0.12 1.11 6.92 -2.36 -0.02 1.09 16 10 N -1.00 -12.42 3.07 -105.40 -0.32 -12.74 16 11 S 2.61 43.02 5.40 -107.50 -0.58 42.44 16 12 O -0.95 -18.34 17.62 -57.54 -1.01 -19.36 16 13 O -0.94 -18.32 14.55 -66.99 -0.97 -19.29 16 14 C -0.61 -9.77 6.18 37.16 0.23 -9.55 16 15 C -0.11 -2.21 5.16 -26.73 -0.14 -2.35 16 16 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 17 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.52 7.84 -51.93 -0.41 0.12 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.13 1.79 8.14 -51.92 -0.42 1.36 16 36 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -38.08 346.76 -8.76 -46.83 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -6.29 Total: -4.16 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 0.25 Total: -16.76 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.41 Total: -38.63 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -2.76 Total: -51.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 43.02 SS G_CDS: -0.58 Total: 42.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.08 -8.76 -46.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330692289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.753 kcal (2) G-P(sol) polarization free energy of solvation -38.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds