Wall clock time and date at job start Fri Apr 10 2020 14:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99791 * 2 1 4 4 O 1.20831 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00009 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47032 * 180.02562 * 5 3 2 7 7 C 1.46507 * 119.99728 * 274.99866 * 6 5 3 8 8 C 1.53000 * 117.49627 * 8.62270 * 7 6 5 9 9 C 1.52999 * 117.49777 * 300.00161 * 7 6 5 10 10 S 1.65595 * 120.00375 * 94.99982 * 6 5 3 11 11 O 1.42093 * 104.27935 * 153.92575 * 10 6 5 12 12 O 1.42105 * 104.27413 * 26.06626 * 10 6 5 13 13 C 1.81401 * 104.44822 * 270.00044 * 10 6 5 14 14 C 1.52997 * 109.47149 * 179.97438 * 13 10 6 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00113 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47375 * 89.99678 * 20 18 16 22 22 H 1.48508 * 109.47196 * 209.99673 * 20 18 16 23 23 H 1.48504 * 109.47051 * 329.99297 * 20 18 16 24 24 H 1.09003 * 109.47100 * 60.00554 * 1 2 3 25 25 H 1.09002 * 109.46986 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47797 * 300.00259 * 1 2 3 27 27 H 1.09001 * 109.47291 * 59.99810 * 5 3 2 28 28 H 1.08997 * 109.47113 * 300.00075 * 5 3 2 29 29 H 1.08996 * 115.54658 * 154.33221 * 7 6 5 30 30 H 1.08995 * 117.50536 * 0.02562 * 8 7 6 31 31 H 1.09008 * 117.49559 * 145.02148 * 8 7 6 32 32 H 1.08997 * 117.49644 * 214.98306 * 9 7 6 33 33 H 1.08998 * 117.49852 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47085 * 299.99812 * 13 10 6 35 35 H 1.09001 * 109.47417 * 59.99938 * 13 10 6 36 36 H 1.09002 * 109.47153 * 299.99990 * 14 13 10 37 37 H 1.08998 * 109.47533 * 59.99620 * 14 13 10 38 38 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 39 39 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 40 40 H 0.97008 * 120.00167 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.0837 3.4140 -1.2627 8 6 3.5533 2.7277 -2.5231 9 6 5.0609 2.8809 -2.3123 10 16 4.3356 3.4382 1.4300 11 8 5.2410 4.4704 1.0640 12 8 4.7365 2.3850 2.2957 13 6 2.7542 4.1415 1.9731 14 6 2.9519 4.8767 3.3002 15 6 1.6183 5.4705 3.7580 16 6 1.8129 6.1941 5.0655 17 1 2.7903 6.2276 5.5239 18 6 0.7436 6.8144 5.6761 19 7 0.9134 7.4454 6.8173 20 14 -0.9467 6.7571 4.8829 21 1 -1.6814 5.5618 5.3692 22 1 -1.7037 7.9833 5.2418 23 1 -0.7987 6.6809 3.4072 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5139 0.8899 27 1 3.9564 0.7807 -0.8891 28 1 3.9556 0.7811 0.8908 29 1 3.9640 4.4948 -1.1894 30 1 3.1280 1.7303 -2.4121 31 1 3.0843 3.3572 -3.2794 32 1 5.5838 3.6111 -2.9299 33 1 5.6282 1.9843 -2.0624 34 1 2.3900 4.8410 1.2206 35 1 2.0271 3.3405 2.1068 36 1 3.3159 4.1770 4.0525 37 1 3.6792 5.6777 3.1671 38 1 1.2548 6.1703 3.0056 39 1 0.8908 4.6698 3.8912 40 1 0.1611 7.8822 7.2467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359812265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:20 Heat of formation + Delta-G solvation = -126.264978 kcal Electronic energy + Delta-G solvation = -23964.551450 eV Core-core repulsion = 20294.160372 eV Total energy + Delta-G solvation = -3670.391078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80163 -38.48191 -37.15384 -36.60195 -35.90446 -34.77826 -33.70259 -32.19122 -29.28924 -28.34037 -27.01800 -23.58560 -22.71293 -22.35636 -21.30784 -20.35862 -19.00188 -18.12608 -18.05572 -17.18347 -16.89144 -16.57421 -16.32758 -15.91375 -15.43594 -14.95174 -14.32956 -14.18648 -13.94904 -13.83024 -13.10831 -12.92509 -12.65446 -12.41499 -12.29649 -12.20650 -12.10985 -11.97316 -11.94236 -11.82073 -11.70206 -11.55347 -11.08381 -10.96653 -10.91977 -10.79414 -10.69216 -10.06361 -9.84839 -9.68107 -9.26144 -9.06905 -8.56874 -6.06887 -4.05848 0.24901 1.87967 2.13724 2.64483 3.28382 3.35848 3.39766 3.49757 3.88639 4.04268 4.22168 4.42512 4.46091 4.52821 4.63064 4.68957 4.84681 4.89057 4.93781 5.00632 5.13815 5.16761 5.27284 5.28276 5.32953 5.57908 5.74948 5.80032 5.83955 6.05898 6.11754 6.21176 6.32737 6.69560 7.16690 7.30032 7.43585 7.73081 8.49345 8.97425 9.54655 11.06375 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.004478 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.387284 B = 6251.782286 C = 7230.245966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.432 3.568 4 O -0.486 6.486 5 C 0.120 3.880 6 N -0.959 5.959 7 C 0.090 3.910 8 C -0.182 4.182 9 C -0.187 4.187 10 S 2.597 3.403 11 O -0.945 6.945 12 O -0.956 6.956 13 C -0.603 4.603 14 C -0.098 4.098 15 C -0.003 4.003 16 C -0.526 4.526 17 H 0.075 0.925 18 C 0.068 3.932 19 N -0.901 5.901 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.021 0.979 39 H 0.015 0.985 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 -15.967 -20.955 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.271 3.729 4 O -0.372 6.372 5 C -0.008 4.008 6 N -0.790 5.790 7 C -0.016 4.016 8 C -0.220 4.220 9 C -0.226 4.226 10 S 2.695 3.305 11 O -0.936 6.936 12 O -0.946 6.946 13 C -0.736 4.736 14 C -0.137 4.137 15 C -0.042 4.042 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.190 1.190 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.033 0.967 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.681 -15.550 -20.420 25.929 hybrid contribution -2.072 0.129 -0.488 2.133 sum 1.608 -15.422 -20.908 26.030 Atomic orbital electron populations 1.23311 0.75928 1.03798 1.02894 1.86486 1.23760 1.33177 1.84108 1.24617 0.92961 0.81967 0.73323 1.90728 1.66721 1.36062 1.43699 1.20832 0.87104 0.84365 1.08453 1.57293 1.81761 1.18200 1.21760 1.21426 1.04629 0.95832 0.79748 1.23287 0.97039 1.02340 0.99375 1.23423 0.92485 1.04140 1.02599 1.05644 0.77868 0.74519 0.72447 1.93587 1.60269 1.58365 1.81368 1.93565 1.81301 1.55198 1.64566 1.30556 1.20790 1.12542 1.09664 1.21339 1.02736 0.99006 0.90644 1.19513 0.91657 0.95821 0.97189 1.21138 0.97593 1.33164 1.04507 0.90714 1.25005 0.98965 0.94709 0.94640 1.69911 1.31668 1.35427 1.16936 0.86794 0.84505 0.77632 0.80471 1.20252 1.21248 1.18996 0.91836 0.87999 0.91488 0.85739 0.84103 0.84258 0.88880 0.87747 0.87634 0.88269 0.85061 0.85400 0.91118 0.90976 0.96111 0.96672 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.45 10.57 -39.26 -0.41 -3.86 16 3 C 0.43 4.65 7.38 36.01 0.27 4.92 16 4 O -0.49 -6.49 14.77 -18.75 -0.28 -6.77 16 5 C 0.12 1.10 5.53 -5.19 -0.03 1.07 16 6 N -0.96 -10.87 2.54 -108.57 -0.28 -11.14 16 7 C 0.09 0.90 6.00 -67.93 -0.41 0.49 16 8 C -0.18 -1.39 9.63 -26.73 -0.26 -1.65 16 9 C -0.19 -1.44 10.12 -26.73 -0.27 -1.71 16 10 S 2.60 38.67 5.43 -107.50 -0.58 38.09 16 11 O -0.95 -16.24 17.15 -57.54 -0.99 -17.23 16 12 O -0.96 -15.97 16.53 -57.54 -0.95 -16.92 16 13 C -0.60 -9.74 5.71 37.16 0.21 -9.53 16 14 C -0.10 -1.98 5.16 -26.74 -0.14 -2.12 16 15 C 0.00 -0.07 4.04 -27.89 -0.11 -0.19 16 16 C -0.53 -15.25 9.66 -34.44 -0.33 -15.58 16 17 H 0.07 2.31 7.99 -52.48 -0.42 1.89 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 20 Si 0.88 21.93 27.47 -169.99 -4.67 17.27 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 24 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 27 H 0.12 0.74 6.56 -51.93 -0.34 0.40 16 28 H 0.14 1.23 6.81 -51.93 -0.35 0.87 16 29 H 0.14 1.37 7.97 -51.93 -0.41 0.95 16 30 H 0.09 0.67 6.15 -51.93 -0.32 0.35 16 31 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.70 8.06 -51.93 -0.42 0.28 16 34 H 0.13 1.94 8.14 -51.92 -0.42 1.52 16 35 H 0.13 1.99 7.22 -51.92 -0.37 1.61 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 39 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -36.31 347.38 -8.21 -44.52 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.96 Total: -0.88 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -0.10 Total: -21.05 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.50 Total: -38.40 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -2.63 Total: -44.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 16 Polarization: 38.67 SS G_CDS: -0.58 Total: 38.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.31 -8.21 -44.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359812265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.746 kcal (2) G-P(sol) polarization free energy of solvation -36.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds