Wall clock time and date at job start Fri Apr 10 2020 14:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34223 * 117.00118 * 2 1 4 4 O 1.20825 * 119.99813 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00464 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47182 * 300.00578 * 5 3 2 7 7 C 1.53004 * 109.47066 * 60.00219 * 5 3 2 8 8 C 1.52994 * 109.47464 * 185.00389 * 7 5 3 9 9 C 1.53003 * 117.49654 * 243.74844 * 8 7 5 10 10 C 1.53004 * 117.50057 * 175.08716 * 8 7 5 11 11 N 1.46496 * 109.47639 * 180.02562 * 5 3 2 12 12 S 1.65599 * 120.00146 * 95.00059 * 11 5 3 13 13 O 1.42105 * 104.27655 * 308.92954 * 12 11 5 14 14 O 1.42101 * 104.27764 * 181.07391 * 12 11 5 15 15 C 1.81395 * 104.44748 * 65.00260 * 12 11 5 16 16 C 1.52999 * 109.46986 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47535 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99840 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00463 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47443 * 59.99483 * 21 19 17 23 23 H 1.48505 * 109.47343 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47001 * 299.99442 * 21 19 17 25 25 H 1.08995 * 109.47377 * 299.99685 * 1 2 3 26 26 H 1.08996 * 109.46880 * 60.00122 * 1 2 3 27 27 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46966 * 305.00273 * 7 5 3 29 29 H 1.09001 * 109.47117 * 64.99998 * 7 5 3 30 30 H 1.08995 * 115.55140 * 29.41453 * 8 7 5 31 31 H 1.08997 * 117.50243 * 359.97438 * 9 8 7 32 32 H 1.08999 * 117.49789 * 145.02116 * 9 8 7 33 33 H 1.09001 * 117.49897 * 214.97717 * 10 8 7 34 34 H 1.08998 * 117.49563 * 359.97438 * 10 8 7 35 35 H 0.97001 * 119.99851 * 275.00586 * 11 5 3 36 36 H 1.09003 * 109.47393 * 299.99669 * 15 12 11 37 37 H 1.08994 * 109.47678 * 60.00285 * 15 12 11 38 38 H 1.09004 * 109.47080 * 299.99725 * 16 15 12 39 39 H 1.09005 * 109.47285 * 59.99790 * 16 15 12 40 40 H 0.96996 * 119.99792 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9558 0.7809 0.8908 7 6 4.1139 0.5811 -1.2484 8 6 5.6423 0.5512 -1.1865 9 6 6.4081 1.3244 -2.2621 10 6 6.3795 -0.2058 -2.2930 11 7 3.9817 2.6797 0.0011 12 16 4.3359 3.4380 1.4301 13 8 3.2109 3.1716 2.2563 14 8 4.6670 4.7663 1.0492 15 6 5.8022 2.5698 2.0518 16 6 6.2322 3.1852 3.3849 17 6 7.4508 2.4645 3.9013 18 1 7.8758 1.6486 3.3354 19 6 8.0224 2.8457 5.0966 20 7 7.5046 3.8388 5.7860 21 14 9.5325 1.9518 5.7368 22 1 10.6378 2.0800 4.7535 23 1 9.9499 2.5492 7.0308 24 1 9.2105 0.5157 5.9352 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.7322 -0.4388 -1.2943 29 1 3.7968 1.1280 -2.1363 30 1 6.0718 0.5230 -0.1852 31 1 5.8230 1.8539 -3.0140 32 1 7.3416 1.8044 -1.9684 33 1 7.2942 -0.7318 -2.0197 34 1 5.7755 -0.6830 -3.0648 35 1 4.0493 3.1658 -0.8356 36 1 5.5657 1.5158 2.1982 37 1 6.6133 2.6632 1.3297 38 1 6.4687 4.2393 3.2390 39 1 5.4210 3.0914 4.1069 40 1 7.9071 4.1073 6.6267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416598014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:18 Heat of formation + Delta-G solvation = -143.611189 kcal Electronic energy + Delta-G solvation = -23884.557689 eV Core-core repulsion = 20213.414423 eV Total energy + Delta-G solvation = -3671.143266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62217 -38.12916 -36.73690 -36.48628 -35.44239 -35.05731 -33.92332 -31.20030 -30.24658 -27.91654 -25.64661 -24.97424 -22.51862 -21.79103 -21.09089 -20.74487 -19.07826 -17.85545 -17.47315 -17.23762 -16.51479 -16.28695 -16.13563 -15.39705 -15.18417 -14.71041 -14.57610 -14.41733 -13.77346 -13.58931 -13.37243 -13.19205 -12.54021 -12.24926 -12.09641 -11.81064 -11.67569 -11.61104 -11.58533 -11.54385 -11.50581 -11.08515 -10.99016 -10.87445 -10.81479 -10.57578 -10.40495 -10.38120 -10.13397 -9.82542 -9.60043 -9.11835 -8.51579 -6.13683 -4.19746 0.70036 2.14648 2.50976 3.06242 3.25964 3.31196 3.32554 3.61923 4.19272 4.21899 4.36106 4.54269 4.60520 4.70583 4.76229 4.80439 4.95129 4.98535 5.07450 5.12308 5.21478 5.38419 5.40647 5.48340 5.53174 5.58638 5.61609 5.78041 5.81535 5.98468 6.07608 6.27653 6.43672 6.94529 7.27707 7.33569 7.70161 7.78411 8.14899 8.83271 9.45122 10.97308 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004504 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.562084 B = 6215.633642 C = 7014.537980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.443 3.557 4 O -0.482 6.482 5 C 0.173 3.827 6 H 0.125 0.875 7 C -0.088 4.088 8 C -0.156 4.156 9 C -0.179 4.179 10 C -0.178 4.178 11 N -1.101 6.101 12 S 2.586 3.414 13 O -0.957 6.957 14 O -0.960 6.960 15 C -0.590 4.590 16 C 0.029 3.971 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.419 0.581 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 -10.649 -16.859 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.281 3.719 4 O -0.366 6.366 5 C 0.062 3.938 6 H 0.143 0.857 7 C -0.126 4.126 8 C -0.174 4.174 9 C -0.216 4.216 10 C -0.215 4.215 11 N -0.856 5.856 12 S 2.683 3.317 13 O -0.947 6.947 14 O -0.950 6.950 15 C -0.723 4.723 16 C -0.010 4.010 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.289 -9.582 -16.176 20.547 hybrid contribution 1.038 -0.615 0.016 1.207 sum -7.250 -10.197 -16.159 20.437 Atomic orbital electron populations 1.23259 0.76448 1.03532 1.02663 1.86482 1.23377 1.33409 1.84394 1.24391 0.92584 0.81732 0.73168 1.90687 1.66487 1.36312 1.43127 1.20199 0.86651 0.83955 1.02968 0.85722 1.21443 0.93984 1.01520 0.95690 1.22292 0.92919 1.05830 0.96362 1.23096 1.02742 0.94236 1.01538 1.22971 1.02569 0.94708 1.01214 1.55800 1.83242 1.19503 1.27070 1.05913 0.77534 0.75101 0.73133 1.93576 1.48446 1.85428 1.67259 1.93562 1.85964 1.34160 1.81329 1.30499 1.17277 1.12869 1.11648 1.18964 0.98477 0.96793 0.86815 1.20938 1.11571 1.17573 1.05948 0.92047 1.25063 0.97595 0.95115 0.96652 1.69945 1.40614 1.27237 1.14972 0.86532 0.82706 0.79823 0.78214 1.20084 1.21080 1.20069 0.91668 0.92094 0.88134 0.88658 0.90393 0.86732 0.88765 0.88407 0.88616 0.88881 0.74727 0.86365 0.85735 0.94788 0.94800 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.13 10.37 -39.24 -0.41 -4.54 16 3 C 0.44 6.05 7.28 36.00 0.26 6.31 16 4 O -0.48 -8.27 16.18 -18.75 -0.30 -8.57 16 5 C 0.17 1.98 2.54 -69.08 -0.18 1.80 16 6 H 0.13 1.28 7.15 -51.93 -0.37 0.90 16 7 C -0.09 -0.71 5.06 -26.73 -0.14 -0.85 16 8 C -0.16 -1.32 5.47 -90.62 -0.50 -1.82 16 9 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 10 C -0.18 -1.34 10.26 -26.69 -0.27 -1.62 16 11 N -1.10 -14.55 4.57 -5.88 -0.03 -14.57 16 12 S 2.59 46.98 5.38 -107.50 -0.58 46.40 16 13 O -0.96 -20.70 17.78 -57.54 -1.02 -21.72 16 14 O -0.96 -20.31 18.08 -57.54 -1.04 -21.35 16 15 C -0.59 -10.73 5.90 37.16 0.22 -10.51 16 16 C 0.03 0.71 4.98 -27.88 -0.14 0.58 16 17 C -0.52 -14.02 9.11 -34.44 -0.31 -14.34 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.66 8.00 -51.93 -0.42 0.24 16 29 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 30 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.42 4.69 8.80 -34.47 -0.30 4.39 16 36 H 0.12 1.84 7.44 -51.92 -0.39 1.45 16 37 H 0.12 1.99 8.14 -51.93 -0.42 1.56 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -36.92 357.97 -8.69 -45.61 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.07 Total: 2.30 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.35 Total: -19.28 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.71 Total: -40.07 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -2.77 Total: -56.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 46.98 SS G_CDS: -0.58 Total: 46.40 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.92 -8.69 -45.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416598014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.005 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds