Wall clock time and date at job start Fri Apr 10 2020 14:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34223 * 117.00118 * 2 1 4 4 O 1.20825 * 119.99813 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00464 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47182 * 300.00578 * 5 3 2 7 7 C 1.53004 * 109.47066 * 60.00219 * 5 3 2 8 8 C 1.52994 * 109.47464 * 185.00389 * 7 5 3 9 9 C 1.53003 * 117.49654 * 243.74844 * 8 7 5 10 10 C 1.53004 * 117.50057 * 175.08716 * 8 7 5 11 11 N 1.46496 * 109.47639 * 180.02562 * 5 3 2 12 12 S 1.65599 * 120.00146 * 95.00059 * 11 5 3 13 13 O 1.42105 * 104.27655 * 308.92954 * 12 11 5 14 14 O 1.42101 * 104.27764 * 181.07391 * 12 11 5 15 15 C 1.81395 * 104.44748 * 65.00260 * 12 11 5 16 16 C 1.52999 * 109.46986 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47535 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99840 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00463 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47443 * 59.99483 * 21 19 17 23 23 H 1.48505 * 109.47343 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47001 * 299.99442 * 21 19 17 25 25 H 1.08995 * 109.47377 * 299.99685 * 1 2 3 26 26 H 1.08996 * 109.46880 * 60.00122 * 1 2 3 27 27 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46966 * 305.00273 * 7 5 3 29 29 H 1.09001 * 109.47117 * 64.99998 * 7 5 3 30 30 H 1.08995 * 115.55140 * 29.41453 * 8 7 5 31 31 H 1.08997 * 117.50243 * 359.97438 * 9 8 7 32 32 H 1.08999 * 117.49789 * 145.02116 * 9 8 7 33 33 H 1.09001 * 117.49897 * 214.97717 * 10 8 7 34 34 H 1.08998 * 117.49563 * 359.97438 * 10 8 7 35 35 H 0.97001 * 119.99851 * 275.00586 * 11 5 3 36 36 H 1.09003 * 109.47393 * 299.99669 * 15 12 11 37 37 H 1.08994 * 109.47678 * 60.00285 * 15 12 11 38 38 H 1.09004 * 109.47080 * 299.99725 * 16 15 12 39 39 H 1.09005 * 109.47285 * 59.99790 * 16 15 12 40 40 H 0.96996 * 119.99792 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9558 0.7809 0.8908 7 6 4.1139 0.5811 -1.2484 8 6 5.6423 0.5512 -1.1865 9 6 6.4081 1.3244 -2.2621 10 6 6.3795 -0.2058 -2.2930 11 7 3.9817 2.6797 0.0011 12 16 4.3359 3.4380 1.4301 13 8 3.2109 3.1716 2.2563 14 8 4.6670 4.7663 1.0492 15 6 5.8022 2.5698 2.0518 16 6 6.2322 3.1852 3.3849 17 6 7.4508 2.4645 3.9013 18 1 7.8758 1.6486 3.3354 19 6 8.0224 2.8457 5.0966 20 7 7.5046 3.8388 5.7860 21 14 9.5325 1.9518 5.7368 22 1 10.6378 2.0800 4.7535 23 1 9.9499 2.5492 7.0308 24 1 9.2105 0.5157 5.9352 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.7322 -0.4388 -1.2943 29 1 3.7968 1.1280 -2.1363 30 1 6.0718 0.5230 -0.1852 31 1 5.8230 1.8539 -3.0140 32 1 7.3416 1.8044 -1.9684 33 1 7.2942 -0.7318 -2.0197 34 1 5.7755 -0.6830 -3.0648 35 1 4.0493 3.1658 -0.8356 36 1 5.5657 1.5158 2.1982 37 1 6.6133 2.6632 1.3297 38 1 6.4687 4.2393 3.2390 39 1 5.4210 3.0914 4.1069 40 1 7.9071 4.1073 6.6267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416598014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:18 Heat of formation + Delta-G solvation = -170.746214 kcal Electronic energy + Delta-G solvation = -23885.734352 eV Core-core repulsion = 20213.414423 eV Total energy + Delta-G solvation = -3672.319929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63123 -38.85837 -38.19188 -37.59513 -37.03803 -36.04630 -35.88241 -33.12656 -31.17835 -28.66927 -27.59608 -25.81571 -23.65385 -23.08714 -22.08450 -21.43568 -20.44668 -19.18328 -18.80752 -18.33554 -18.10922 -17.33018 -17.19065 -16.93281 -16.51532 -16.34332 -15.70012 -15.15122 -15.07641 -14.67887 -14.43988 -14.34306 -14.10373 -13.73035 -13.23481 -13.17178 -13.07499 -12.97605 -12.89179 -12.78438 -12.70388 -12.34524 -12.20672 -12.19775 -12.13912 -11.91433 -11.78253 -11.68671 -11.32766 -11.00228 -10.72740 -10.61348 -10.55375 -8.23182 -6.37161 -0.78032 1.11440 1.43770 1.46967 1.51910 1.54991 1.86872 2.40488 2.77893 3.00917 3.10839 3.23076 3.40913 3.75721 3.80968 3.92529 4.06854 4.12073 4.17910 4.31959 4.33228 4.35031 4.36663 4.71242 4.72931 4.76727 4.90708 4.96679 5.01931 5.20886 5.27916 5.29509 5.32554 5.42013 5.48118 5.70869 5.95285 6.07527 6.69237 6.76810 7.33257 8.89059 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004504 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.562084 B = 6215.633642 C = 7014.537980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.441 3.559 4 O -0.526 6.526 5 C 0.164 3.836 6 H 0.140 0.860 7 C -0.076 4.076 8 C -0.165 4.165 9 C -0.190 4.190 10 C -0.168 4.168 11 N -1.084 6.084 12 S 2.605 3.395 13 O -0.996 6.996 14 O -0.995 6.995 15 C -0.579 4.579 16 C 0.020 3.980 17 C -0.534 4.534 18 H 0.082 0.918 19 C -0.004 4.004 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.262 1.262 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.430 0.570 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 -13.475 -18.552 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.282 3.718 4 O -0.413 6.413 5 C 0.054 3.946 6 H 0.157 0.843 7 C -0.114 4.114 8 C -0.183 4.183 9 C -0.227 4.227 10 C -0.205 4.205 11 N -0.844 5.844 12 S 2.703 3.297 13 O -0.986 6.986 14 O -0.986 6.986 15 C -0.712 4.712 16 C -0.019 4.019 17 C -0.573 4.573 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.797 3.203 22 H -0.187 1.187 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.156 0.844 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.267 0.733 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.367 -12.433 -17.895 23.001 hybrid contribution 0.661 0.214 0.483 0.846 sum -6.706 -12.218 -17.411 22.303 Atomic orbital electron populations 1.23560 0.75072 1.05854 1.02214 1.86477 1.24723 1.32101 1.83697 1.24829 0.93397 0.81673 0.71912 1.90677 1.67551 1.37736 1.45382 1.20633 0.85628 0.82756 1.05548 0.84277 1.21433 0.93713 1.02202 0.94077 1.22308 0.92940 1.06583 0.96454 1.23171 1.02629 0.95017 1.01854 1.23032 1.02498 0.94155 1.00796 1.55239 1.82822 1.20630 1.25716 1.04995 0.76837 0.74374 0.73474 1.93528 1.50066 1.85829 1.69156 1.93506 1.86296 1.36706 1.82074 1.30313 1.18105 1.14093 1.08661 1.18830 0.97525 0.95762 0.89796 1.21480 1.11868 1.17831 1.06161 0.90015 1.26118 1.01101 0.95892 0.97157 1.70109 1.42621 1.29313 1.15574 0.85375 0.78648 0.78867 0.77431 1.18699 1.21387 1.18581 0.93117 0.91663 0.84417 0.86624 0.89365 0.87127 0.88011 0.89174 0.88547 0.87541 0.73316 0.83163 0.82933 0.97731 0.97641 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.41 10.37 -51.35 -0.53 -7.94 16 3 C 0.44 11.47 7.28 71.24 0.52 11.99 16 4 O -0.53 -17.97 16.18 21.97 0.36 -17.62 16 5 C 0.16 3.40 2.54 44.25 0.11 3.51 16 6 H 0.14 2.49 7.15 -2.39 -0.02 2.47 16 7 C -0.08 -0.99 5.06 30.59 0.15 -0.83 16 8 C -0.16 -2.27 5.47 -10.79 -0.06 -2.33 16 9 C -0.19 -2.65 10.18 30.62 0.31 -2.34 16 10 C -0.17 -2.00 10.26 30.62 0.31 -1.68 16 11 N -1.08 -27.31 4.57 -172.52 -0.79 -28.09 16 12 S 2.61 94.93 5.38 -56.49 -0.30 94.63 16 13 O -1.00 -44.00 17.78 -127.65 -2.27 -46.27 16 14 O -1.00 -42.98 18.08 -127.65 -2.31 -45.28 16 15 C -0.58 -20.44 5.90 71.98 0.42 -20.02 16 16 C 0.02 1.01 4.98 29.85 0.15 1.16 16 17 C -0.53 -28.53 9.11 25.60 0.23 -28.30 16 18 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 19 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 20 N -0.94 -56.61 13.29 21.45 0.28 -56.33 16 21 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 26 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.12 1.12 8.00 -2.39 -0.02 1.10 16 29 H 0.09 1.01 7.88 -2.39 -0.02 0.99 16 30 H 0.11 1.63 8.08 -2.39 -0.02 1.62 16 31 H 0.10 1.25 8.03 -2.39 -0.02 1.23 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.43 9.06 8.80 -96.74 -0.85 8.20 16 36 H 0.15 4.30 7.44 -2.39 -0.02 4.29 16 37 H 0.15 4.53 8.14 -2.39 -0.02 4.51 16 38 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -82.16 357.97 0.47 -81.68 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.19 Total: 17.92 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 3.82 Total: -36.99 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -0.50 Total: -84.42 kcal Atomic # 8 Polarization: -112.35 SS G_CDS: -4.75 Total: -117.11 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 94.93 SS G_CDS: -0.30 Total: 94.63 kcal Total: -82.16 0.47 -81.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416598014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.062 kcal (2) G-P(sol) polarization free energy of solvation -82.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds