Wall clock time and date at job start Fri Apr 10 2020 14:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00173 * 2 1 4 4 O 1.20818 * 119.99983 * 0.27497 * 3 2 1 5 5 C 1.50706 * 119.99763 * 179.97438 * 3 2 1 6 6 H 1.08996 * 112.84772 * 48.80658 * 5 3 2 7 7 C 1.53781 * 113.61083 * 179.97438 * 5 3 2 8 8 C 1.53779 * 87.07868 * 139.98291 * 7 5 3 9 9 H 1.09004 * 113.61052 * 220.01865 * 8 7 5 10 10 N 1.46498 * 113.61882 * 89.20326 * 8 7 5 11 11 S 1.65600 * 120.00452 * 144.99729 * 10 8 7 12 12 O 1.42094 * 104.27455 * 181.07239 * 11 10 8 13 13 O 1.42098 * 104.27684 * 308.92982 * 11 10 8 14 14 C 1.81397 * 104.44723 * 65.00134 * 11 10 8 15 15 C 1.53002 * 109.47040 * 180.02562 * 14 11 10 16 16 C 1.53000 * 109.47202 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.47237 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00167 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00149 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99897 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00024 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47259 * 89.99642 * 21 19 17 23 23 H 1.48502 * 109.46699 * 209.99809 * 21 19 17 24 24 H 1.48501 * 109.46757 * 329.99425 * 21 19 17 25 25 C 1.53775 * 113.61422 * 277.49401 * 5 3 2 26 26 H 1.08996 * 109.47464 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46718 * 299.99877 * 1 2 3 28 28 H 1.08998 * 109.47176 * 60.00127 * 1 2 3 29 29 H 1.08996 * 113.61907 * 254.53124 * 7 5 3 30 30 H 1.09004 * 113.61815 * 25.35334 * 7 5 3 31 31 H 0.97007 * 119.99603 * 324.99723 * 10 8 7 32 32 H 1.09001 * 109.47314 * 299.99785 * 14 11 10 33 33 H 1.09000 * 109.47502 * 60.00107 * 14 11 10 34 34 H 1.09001 * 109.46753 * 299.99959 * 15 14 11 35 35 H 1.08990 * 109.47179 * 59.99683 * 15 14 11 36 36 H 1.08995 * 109.46883 * 299.99916 * 16 15 14 37 37 H 1.09002 * 109.46883 * 59.99925 * 16 15 14 38 38 H 0.96996 * 119.99706 * 180.02562 * 20 19 17 39 39 H 1.08996 * 113.61809 * 334.57079 * 25 5 3 40 40 H 1.09007 * 113.61519 * 105.47437 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0050 5 6 3.5664 1.2747 0.0006 6 1 4.0239 0.6361 -0.7549 7 6 4.1078 2.7141 -0.0001 8 6 5.1807 2.2272 0.9882 9 1 5.3954 2.9393 1.7851 10 7 6.3911 1.7197 0.3375 11 16 7.8716 1.9599 1.0396 12 8 8.7901 1.3668 0.1321 13 8 7.9080 3.3539 1.3125 14 6 7.7995 1.0106 2.5837 15 6 9.1254 1.1547 3.3333 16 6 9.0644 0.3546 4.6360 17 6 10.3707 0.4961 5.3741 18 1 11.1651 1.0963 4.9557 19 6 10.5520 -0.1416 6.5830 20 7 9.5848 -0.8730 7.0923 21 14 12.1709 0.0343 7.4982 22 1 12.1001 1.2053 8.4087 23 1 12.4272 -1.1947 8.2914 24 1 13.2724 0.2321 6.5220 25 6 4.1906 1.1237 1.3978 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.5113 3.0284 -0.9626 30 1 3.4167 3.4409 0.4268 31 1 6.3254 1.2429 -0.5048 32 1 6.9881 1.3891 3.2054 33 1 7.6228 -0.0406 2.3560 34 1 9.9371 0.7765 2.7118 35 1 9.3017 2.2059 3.5610 36 1 8.2528 0.7332 5.2572 37 1 8.8880 -0.6968 4.4086 38 1 9.7122 -1.3213 7.9429 39 1 3.5227 1.4152 2.2083 40 1 4.6609 0.1544 1.5635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595402289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:50 Heat of formation + Delta-G solvation = -179.600433 kcal Electronic energy + Delta-G solvation = -22772.649896 eV Core-core repulsion = 19099.946020 eV Total energy + Delta-G solvation = -3672.703877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85308 -39.80586 -38.13600 -37.42513 -37.02248 -36.42818 -34.13337 -33.81022 -29.62226 -29.26245 -26.78663 -26.66832 -25.57160 -22.61718 -22.40263 -20.79735 -20.23007 -19.11044 -18.58397 -18.37215 -17.64350 -17.33394 -17.28606 -17.08138 -16.49790 -16.36016 -15.67612 -15.21424 -15.01036 -14.47284 -14.38428 -14.08129 -13.86252 -13.66363 -13.48148 -13.38501 -13.17668 -13.10601 -12.94679 -12.94288 -12.74044 -12.60382 -12.44910 -12.14822 -11.81839 -11.81270 -11.72787 -11.69202 -11.34497 -11.29158 -11.05220 -10.55416 -10.36615 -8.21145 -6.31521 -0.71395 1.12563 1.41504 1.41737 1.53076 1.75357 1.80549 2.41072 2.78771 3.12643 3.25741 3.32353 3.42801 3.68884 3.77062 3.84117 3.97003 4.12778 4.25055 4.31073 4.32698 4.44610 4.60258 4.70492 4.71682 4.75962 4.83344 4.97162 5.01674 5.05216 5.10801 5.36242 5.40303 5.48585 5.67141 5.82335 6.13260 6.22376 6.71219 6.84520 7.37716 8.90161 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002882 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.874142 B = 9712.039916 C =10791.913887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.109 4.109 6 H 0.149 0.851 7 C -0.120 4.120 8 C 0.117 3.883 9 H 0.118 0.882 10 N -1.088 6.088 11 S 2.633 3.367 12 O -0.991 6.991 13 O -0.990 6.990 14 C -0.608 4.608 15 C -0.108 4.108 16 C 0.031 3.969 17 C -0.552 4.552 18 H 0.059 0.941 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.960 3.040 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.265 1.265 25 C -0.136 4.136 26 H 0.128 0.872 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.428 0.572 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.104 0.896 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 1.698 -15.924 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.128 4.128 6 H 0.166 0.834 7 C -0.160 4.160 8 C 0.009 3.991 9 H 0.136 0.864 10 N -0.848 5.848 11 S 2.728 3.272 12 O -0.981 6.981 13 O -0.979 6.979 14 C -0.739 4.739 15 C -0.147 4.147 16 C -0.007 4.007 17 C -0.590 4.590 18 H 0.077 0.923 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.785 3.215 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.190 1.190 25 C -0.175 4.175 26 H 0.146 0.854 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.265 0.735 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.023 0.977 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.930 2.512 -16.011 23.437 hybrid contribution -0.034 -0.654 0.776 1.016 sum -16.964 1.858 -15.235 22.876 Atomic orbital electron populations 1.23521 0.75175 1.05540 1.02421 1.86534 1.24724 1.33218 1.83504 1.24091 0.92564 0.80968 0.70854 1.90652 1.67873 1.37401 1.46823 1.22760 0.85793 1.01534 1.02713 0.83363 1.23310 0.96488 0.94673 1.01496 1.21746 0.84235 0.96476 0.96646 0.86445 1.55118 1.21403 1.72739 1.35528 1.04171 0.72576 0.74466 0.75980 1.93543 1.62551 1.79755 1.62270 1.93545 1.86042 1.31885 1.86467 1.30525 1.06890 1.16743 1.19770 1.21313 0.93648 1.01561 0.98174 1.18958 0.95743 0.94570 0.91439 1.21761 1.01268 1.30372 1.05585 0.92256 1.25906 1.00413 0.94740 0.98441 1.70064 1.34313 1.32800 1.19734 0.85513 0.79616 0.77771 0.78584 1.19785 1.20617 1.18968 1.23541 0.97665 1.01690 0.94629 0.85414 0.92131 0.91937 0.88706 0.87832 0.73462 0.83413 0.83229 0.91662 0.91588 0.97742 0.97786 0.92679 0.87799 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.86 10.56 -51.41 -0.54 -6.40 16 3 C 0.47 8.24 7.48 71.24 0.53 8.77 16 4 O -0.54 -12.49 15.65 21.99 0.34 -12.15 16 5 C -0.11 -1.34 4.08 -11.01 -0.04 -1.39 16 6 H 0.15 1.15 8.12 -2.39 -0.02 1.13 16 7 C -0.12 -1.62 7.20 31.12 0.22 -1.40 16 8 C 0.12 1.68 4.39 45.53 0.20 1.88 16 9 H 0.12 1.73 7.76 -2.38 -0.02 1.71 16 10 N -1.09 -17.26 5.62 -167.15 -0.94 -18.20 16 11 S 2.63 66.54 5.43 -56.49 -0.31 66.23 16 12 O -0.99 -31.33 18.08 -127.65 -2.31 -33.63 16 13 O -0.99 -31.56 17.58 -127.65 -2.24 -33.81 16 14 C -0.61 -16.30 6.07 71.98 0.44 -15.86 16 15 C -0.11 -4.16 5.16 30.59 0.16 -4.01 16 16 C 0.03 1.56 4.97 29.85 0.15 1.71 16 17 C -0.55 -30.88 9.11 25.60 0.23 -30.64 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 21 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.14 -1.63 7.43 31.13 0.23 -1.40 16 26 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.57 7.43 -2.39 -0.02 1.55 16 31 H 0.43 4.81 8.76 -96.74 -0.85 3.96 16 32 H 0.15 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 40 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -78.37 354.73 0.28 -78.09 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.19 Total: 8.97 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 3.78 Total: -40.20 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -0.65 Total: -72.87 kcal Atomic # 8 Polarization: -81.24 SS G_CDS: -4.75 Total: -85.99 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 66.54 SS G_CDS: -0.31 Total: 66.23 kcal Total: -78.37 0.28 -78.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595402289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.511 kcal (2) G-P(sol) polarization free energy of solvation -78.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds