Wall clock time and date at job start Fri Apr 10 2020 14:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99762 * 2 1 4 4 O 1.20826 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99954 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46886 * 179.97438 * 5 3 2 7 7 C 1.36904 * 119.99750 * 265.63656 * 6 5 3 8 8 H 1.08002 * 119.99624 * 143.13532 * 7 6 5 9 9 C 1.39021 * 120.00535 * 323.12965 * 7 6 5 10 10 N 1.31378 * 120.00375 * 160.39677 * 9 7 6 11 11 Si 1.86802 * 119.99603 * 340.39744 * 9 7 6 12 12 H 1.48505 * 109.47320 * 89.29276 * 11 9 7 13 13 H 1.48497 * 109.47148 * 209.29057 * 11 9 7 14 14 H 1.48502 * 109.47268 * 329.28749 * 11 9 7 15 15 C 1.34777 * 120.00237 * 85.64429 * 6 5 3 16 16 O 1.21625 * 119.99608 * 4.57264 * 15 6 5 17 17 C 1.47422 * 120.00093 * 184.57767 * 15 6 5 18 18 C 1.39586 * 120.06154 * 321.48792 * 17 15 6 19 19 C 1.37772 * 120.18195 * 179.97438 * 18 17 15 20 20 C 1.38662 * 119.97964 * 0.21257 * 19 18 17 21 21 C 1.37681 * 120.33040 * 0.02562 * 20 19 18 22 22 C 1.38851 * 120.87484 * 359.58018 * 21 20 19 23 23 O 1.35862 * 111.30567 * 181.06618 * 22 21 20 24 24 C 1.43784 * 109.23033 * 340.65853 * 23 22 21 25 25 C 1.51674 * 132.12537 * 179.09804 * 21 20 19 26 26 H 1.09003 * 109.47453 * 60.00373 * 1 2 3 27 27 H 1.09002 * 109.46810 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47509 * 300.00135 * 1 2 3 29 29 H 1.09000 * 109.46907 * 60.00079 * 5 3 2 30 30 H 1.09003 * 109.46982 * 300.00040 * 5 3 2 31 31 H 0.97000 * 120.00325 * 180.02562 * 10 9 7 32 32 H 1.08000 * 119.90852 * 359.97245 * 18 17 15 33 33 H 1.08001 * 120.01103 * 180.23623 * 19 18 17 34 34 H 1.07997 * 119.83079 * 179.97438 * 20 19 18 35 35 H 1.08999 * 110.75361 * 269.54868 * 24 23 22 36 36 H 1.09003 * 110.91328 * 146.26560 * 24 23 22 37 37 H 1.08995 * 110.94398 * 313.70852 * 25 21 20 38 38 H 1.08997 * 110.94410 * 77.36773 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9815 2.6798 -0.0002 7 6 4.2626 3.3099 -1.1827 8 1 3.9931 4.3468 -1.3193 9 6 4.8949 2.6151 -2.2075 10 7 4.8264 3.0592 -3.4420 11 14 5.8418 1.0500 -1.8290 12 1 4.9267 -0.1162 -1.9185 13 1 6.9452 0.8897 -2.8098 14 1 6.4064 1.1323 -0.4580 15 6 4.0871 3.3520 1.1633 16 8 3.9188 2.7712 2.2185 17 6 4.4064 4.7912 1.1567 18 6 5.3245 5.2996 0.2364 19 6 5.6244 6.6442 0.2277 20 6 5.0166 7.4956 1.1380 21 6 4.1132 7.0042 2.0534 22 6 3.7868 5.6548 2.0787 23 8 2.8635 5.3882 3.0391 24 6 2.8552 6.4592 3.9984 25 6 3.3194 7.6732 3.1593 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.9563 0.7806 -0.8892 30 1 3.9556 0.7810 0.8908 31 1 5.2673 2.5743 -4.1571 32 1 5.8012 4.6370 -0.4708 33 1 6.3323 7.0352 -0.4881 34 1 5.2537 8.5491 1.1293 35 1 3.5570 6.2581 4.8079 36 1 1.8515 6.6220 4.3911 37 1 3.9540 8.3346 3.7490 38 1 2.4659 8.2157 2.7528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933219740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:39 Heat of formation + Delta-G solvation = -91.782465 kcal Electronic energy + Delta-G solvation = -25710.531365 eV Core-core repulsion = 21906.191610 eV Total energy + Delta-G solvation = -3804.339755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77614 -39.95776 -38.63019 -36.69947 -35.86265 -34.89565 -32.36931 -32.09410 -30.04129 -29.13400 -28.37329 -26.50686 -25.17893 -23.32137 -22.37443 -21.41425 -20.81159 -19.18263 -17.80976 -17.30940 -16.94484 -16.61659 -16.06084 -15.89245 -15.70751 -15.33904 -15.10652 -14.66770 -14.05856 -13.86611 -13.20958 -13.14743 -12.98906 -12.82573 -12.71911 -12.42188 -12.38568 -11.99267 -11.87477 -11.60220 -11.50971 -11.32470 -11.02933 -10.78288 -10.53333 -10.41432 -10.31653 -10.08630 -9.87844 -9.35241 -8.76365 -8.30045 -8.02709 -7.65915 -6.58446 -4.18820 1.56044 1.84617 2.87482 2.91580 3.01754 3.15017 3.18326 3.61321 3.75909 3.96869 4.15519 4.36148 4.64986 4.83178 4.87039 5.13033 5.27526 5.38504 5.46677 5.47162 5.52713 5.56237 5.64953 5.68603 5.80738 5.83513 5.86778 5.95810 6.01590 6.12856 6.45394 6.74757 6.81103 6.86258 7.00865 7.08493 7.21242 7.62178 7.90692 8.14905 8.41193 8.78596 9.16003 9.48334 10.50408 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.006567 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.378564 B = 4262.779994 C = 5711.148852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.487 6.487 5 C 0.103 3.897 6 N -0.446 5.446 7 C -0.344 4.344 8 H 0.115 0.885 9 C 0.064 3.936 10 N -0.849 5.849 11 Si 0.861 3.139 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.254 1.254 15 C 0.541 3.459 16 O -0.577 6.577 17 C -0.119 4.119 18 C -0.025 4.025 19 C -0.168 4.168 20 C -0.059 4.059 21 C -0.202 4.202 22 C 0.149 3.851 23 O -0.288 6.288 24 C 0.048 3.952 25 C -0.103 4.103 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.278 0.722 32 H 0.164 0.836 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 3.456 7.149 7.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.288 3.712 4 O -0.372 6.372 5 C -0.022 4.022 6 N -0.167 5.167 7 C -0.471 4.471 8 H 0.132 0.868 9 C -0.145 4.145 10 N -0.483 5.483 11 Si 0.688 3.312 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.177 1.177 15 C 0.332 3.668 16 O -0.460 6.460 17 C -0.122 4.122 18 C -0.043 4.043 19 C -0.186 4.186 20 C -0.077 4.077 21 C -0.203 4.203 22 C 0.102 3.898 23 O -0.200 6.200 24 C -0.027 4.027 25 C -0.141 4.141 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.182 0.818 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.293 3.264 7.488 8.270 hybrid contribution 0.062 -0.544 -0.204 0.584 sum -1.231 2.720 7.284 7.872 Atomic orbital electron populations 1.23135 0.77555 1.02805 1.02274 1.86516 1.22667 1.34481 1.84979 1.24716 0.92814 0.81242 0.72383 1.90633 1.66539 1.36225 1.43756 1.21495 0.87091 0.88264 1.05361 1.43238 1.58317 1.08304 1.06795 1.19267 1.38795 0.99523 0.89535 0.86780 1.25341 0.96364 0.98111 0.94637 1.69724 1.39378 1.40223 0.99020 0.87237 0.80706 0.83101 0.80172 1.19382 1.20634 1.17731 1.17996 0.78977 0.86727 0.83136 1.90665 1.54602 1.69559 1.31168 1.19060 1.01187 0.92970 0.99006 1.21847 0.93098 0.95685 0.93685 1.20996 1.03218 0.93704 1.00671 1.20315 0.94564 0.99319 0.93551 1.20574 1.03791 0.93474 1.02463 1.19452 0.88490 0.92179 0.89641 1.86926 1.53123 1.45115 1.34875 1.23803 1.02705 0.84611 0.91614 1.21709 0.99451 0.97991 0.94906 0.92205 0.88717 0.92330 0.87060 0.86974 0.91132 0.81829 0.85427 0.86354 0.90832 0.88076 0.89564 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -7.15 10.57 -39.25 -0.41 -7.56 16 3 C 0.45 10.31 8.00 36.01 0.29 10.59 16 4 O -0.49 -12.60 16.09 -18.75 -0.30 -12.90 16 5 C 0.10 2.36 4.61 -5.19 -0.02 2.34 16 6 N -0.45 -11.17 1.73 -117.32 -0.20 -11.37 16 7 C -0.34 -8.85 6.92 -15.00 -0.10 -8.95 16 8 H 0.11 3.13 6.35 -52.49 -0.33 2.80 16 9 C 0.06 1.60 5.33 -17.46 -0.09 1.51 16 10 N -0.85 -22.35 13.95 55.50 0.77 -21.58 16 11 Si 0.86 18.79 25.06 -169.99 -4.26 14.53 16 12 H -0.27 -5.54 6.42 56.52 0.36 -5.18 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.25 -5.51 7.11 56.52 0.40 -5.11 16 15 C 0.54 13.75 7.16 -12.52 -0.09 13.66 16 16 O -0.58 -15.60 16.29 5.14 0.08 -15.51 16 17 C -0.12 -2.71 5.39 -104.72 -0.56 -3.27 16 18 C -0.02 -0.50 7.65 -39.25 -0.30 -0.81 16 19 C -0.17 -2.81 10.05 -39.59 -0.40 -3.20 16 20 C -0.06 -0.91 10.02 -39.63 -0.40 -1.31 16 21 C -0.20 -3.41 6.27 -104.12 -0.65 -4.06 16 22 C 0.15 3.13 6.69 -38.42 -0.26 2.87 16 23 O -0.29 -5.95 10.78 -19.42 -0.21 -6.16 16 24 C 0.05 0.67 8.01 38.06 0.30 0.97 16 25 C -0.10 -1.32 7.12 -26.50 -0.19 -1.51 16 26 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 29 H 0.11 2.48 3.01 -51.93 -0.16 2.32 16 30 H 0.11 2.39 7.50 -51.93 -0.39 2.00 16 31 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.16 3.46 5.96 -52.49 -0.31 3.15 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -33.07 323.11 -5.24 -38.31 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.17 Total: 6.92 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -1.41 Total: 10.45 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.57 Total: -32.95 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.84 Total: -42.13 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.26 Total: 14.53 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.07 -5.24 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.469 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds