Wall clock time and date at job start Fri Apr 10 2020 14:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34234 * 116.99890 * 2 1 4 4 O 1.20824 * 119.99816 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99852 * 180.02562 * 3 2 1 6 6 N 1.46490 * 109.47107 * 180.02562 * 5 3 2 7 7 C 1.36939 * 120.00105 * 270.14498 * 6 5 3 8 8 H 1.08007 * 120.00101 * 146.82692 * 7 6 5 9 9 C 1.38817 * 120.00093 * 326.84062 * 7 6 5 10 10 N 1.31618 * 120.00176 * 155.79578 * 9 7 6 11 11 Si 1.86796 * 119.99550 * 335.78881 * 9 7 6 12 12 H 1.48502 * 109.47085 * 95.62985 * 11 9 7 13 13 H 1.48499 * 109.47328 * 215.62751 * 11 9 7 14 14 H 1.48500 * 109.47425 * 335.63087 * 11 9 7 15 15 C 1.46504 * 120.00292 * 90.14812 * 6 5 3 16 16 C 1.53001 * 109.47035 * 90.50797 * 15 6 5 17 17 C 1.52589 * 109.23988 * 294.44402 * 16 15 6 18 18 C 1.53056 * 109.97857 * 169.67816 * 17 16 15 19 19 S 1.81672 * 108.96920 * 63.70156 * 18 17 16 20 20 O 1.42099 * 108.66298 * 191.35720 * 19 18 17 21 21 O 1.42094 * 108.74555 * 60.04527 * 19 18 17 22 22 C 1.81672 * 101.30673 * 305.68759 * 19 18 17 23 23 C 1.52585 * 109.24360 * 173.32902 * 16 15 6 24 24 H 1.09006 * 109.46541 * 59.99927 * 1 2 3 25 25 H 1.08996 * 109.47183 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47281 * 300.00460 * 1 2 3 27 27 H 1.09001 * 109.47241 * 59.99557 * 5 3 2 28 28 H 1.09003 * 109.46601 * 300.00259 * 5 3 2 29 29 H 0.96996 * 119.99526 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.46786 * 330.50695 * 15 6 5 31 31 H 1.08997 * 109.47208 * 210.50887 * 15 6 5 32 32 H 1.08999 * 109.24409 * 53.88171 * 16 15 6 33 33 H 1.09005 * 109.38626 * 289.87237 * 17 16 15 34 34 H 1.08999 * 109.38881 * 49.55773 * 17 16 15 35 35 H 1.09006 * 109.57657 * 303.84788 * 18 17 16 36 36 H 1.08995 * 109.63179 * 183.59077 * 18 17 16 37 37 H 1.09001 * 109.54671 * 294.44037 * 22 19 18 38 38 H 1.08998 * 109.63195 * 174.20447 * 22 19 18 39 39 H 1.08997 * 109.38241 * 310.44278 * 23 16 15 40 40 H 1.09005 * 109.38424 * 70.22944 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1725 3.3379 -1.1854 8 1 3.9503 4.3923 -1.2596 9 6 4.6512 2.6500 -2.2920 10 7 4.4001 3.0972 -3.5042 11 14 5.6519 1.0898 -2.0607 12 1 4.7593 -0.0918 -2.1720 13 1 6.7031 1.0162 -3.1070 14 1 6.2888 1.1044 -0.7193 15 6 4.1931 3.3805 1.2692 16 6 5.6531 3.2260 1.7000 17 6 5.9338 1.7582 2.0084 18 6 7.4378 1.5405 2.1908 19 16 8.0002 2.4858 3.6367 20 8 9.4211 2.4967 3.6482 21 8 7.2990 2.0260 4.7838 22 6 7.4093 4.1534 3.2239 23 6 5.9087 4.0918 2.9303 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9558 0.7809 -0.8908 28 1 3.9564 0.7805 0.8892 29 1 4.7343 2.6163 -4.2774 30 1 3.5421 2.9542 2.0324 31 1 3.9614 4.4380 1.1433 32 1 6.3035 3.5534 0.8890 33 1 5.4130 1.4746 2.9231 34 1 5.5767 1.1406 1.1843 35 1 7.9670 1.8842 1.3020 36 1 7.6380 0.4807 2.3475 37 1 7.9383 4.5204 2.3444 38 1 7.5894 4.8241 4.0640 39 1 5.5340 5.0990 2.7480 40 1 5.3910 3.6629 3.7883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116391082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:24 Heat of formation + Delta-G solvation = -127.010023 kcal Electronic energy + Delta-G solvation = -24605.206448 eV Core-core repulsion = 20934.783062 eV Total energy + Delta-G solvation = -3670.423385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72853 -38.22089 -36.94016 -36.03089 -35.93718 -34.85338 -31.94938 -31.70096 -29.66465 -28.06306 -26.38395 -24.76236 -23.60745 -21.84237 -20.43715 -19.98314 -18.82849 -17.38610 -17.09802 -16.76264 -16.34620 -16.13151 -15.73247 -15.60974 -15.08667 -14.83605 -14.49270 -14.06277 -13.58299 -13.47687 -13.06139 -12.81303 -12.76739 -12.60898 -12.35666 -12.13102 -12.01838 -11.92842 -11.77659 -11.67121 -11.40344 -11.07510 -10.90100 -10.74583 -10.61898 -10.33769 -10.24743 -10.22893 -9.93795 -9.71108 -9.58721 -8.74624 -7.26335 -6.20086 -3.59495 0.04804 2.66079 2.97841 3.10345 3.23698 3.31400 3.33229 3.63600 3.95692 4.27894 4.48994 4.61059 4.73531 4.74157 4.81811 5.04219 5.17137 5.22549 5.40258 5.42541 5.47291 5.55805 5.62878 5.66872 5.70620 5.81768 5.86719 5.91942 5.92757 6.05464 6.19990 6.33092 6.50824 6.68476 7.01152 7.71690 8.15965 8.49832 8.72920 9.45403 9.77962 10.94699 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.005339 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.040832 B = 5243.637596 C = 5953.028507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.425 3.575 4 O -0.491 6.491 5 C 0.132 3.868 6 N -0.570 5.570 7 C -0.270 4.270 8 H 0.086 0.914 9 C 0.036 3.964 10 N -0.885 5.885 11 Si 0.854 3.146 12 H -0.281 1.281 13 H -0.296 1.296 14 H -0.253 1.253 15 C 0.161 3.839 16 C -0.134 4.134 17 C -0.115 4.115 18 C -0.595 4.595 19 S 2.410 3.590 20 O -0.954 6.954 21 O -0.943 6.943 22 C -0.597 4.597 23 C -0.103 4.103 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.266 0.734 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.088 0.912 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 -3.303 11.475 12.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.295 6.295 3 C 0.264 3.736 4 O -0.376 6.376 5 C 0.003 3.997 6 N -0.289 5.289 7 C -0.399 4.399 8 H 0.104 0.896 9 C -0.165 4.165 10 N -0.524 5.524 11 Si 0.683 3.317 12 H -0.209 1.209 13 H -0.223 1.223 14 H -0.177 1.177 15 C 0.035 3.965 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.725 4.725 19 S 2.594 3.406 20 O -0.951 6.951 21 O -0.940 6.940 22 C -0.727 4.727 23 C -0.142 4.142 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.107 0.893 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.390 -3.242 12.032 12.689 hybrid contribution -0.047 -0.599 -1.006 1.172 sum 2.343 -3.841 11.026 11.909 Atomic orbital electron populations 1.23071 0.78565 1.02434 1.01931 1.86614 1.22086 1.35825 1.84984 1.26485 0.94197 0.80881 0.72080 1.90574 1.66705 1.36359 1.43952 1.21500 0.85532 0.89641 1.03006 1.43885 1.73760 1.07854 1.03362 1.18808 1.39144 0.95972 0.85938 0.89639 1.25389 0.98232 0.97811 0.95093 1.69897 1.43922 1.41000 0.97621 0.87325 0.81599 0.83977 0.78784 1.20916 1.22317 1.17735 1.20916 0.91088 0.97786 0.86738 1.22029 1.02960 0.93140 0.97325 1.21600 0.90407 0.98920 1.04319 1.30165 1.07765 1.14416 1.20187 1.08164 0.75269 0.79420 0.77790 1.93567 1.27932 1.86385 1.87237 1.93560 1.75329 1.79519 1.45629 1.30161 1.07795 1.22794 1.11994 1.21319 0.90521 1.03189 0.99148 0.92451 0.89183 0.92688 0.89029 0.89261 0.92377 0.93358 0.91586 0.88872 0.90331 0.88391 0.84815 0.85234 0.84831 0.85256 0.89299 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.84 10.57 -39.27 -0.41 -7.26 16 3 C 0.42 8.81 8.03 36.01 0.29 9.09 16 4 O -0.49 -11.54 16.18 -18.75 -0.30 -11.84 16 5 C 0.13 2.63 4.18 -5.20 -0.02 2.61 16 6 N -0.57 -11.97 1.47 -174.61 -0.26 -12.22 16 7 C -0.27 -6.89 9.95 -15.06 -0.15 -7.04 16 8 H 0.09 2.40 8.06 -52.48 -0.42 1.98 16 9 C 0.04 0.97 5.30 -17.43 -0.09 0.87 16 10 N -0.88 -25.55 13.97 55.49 0.78 -24.77 16 11 Si 0.85 19.23 24.96 -169.99 -4.24 14.99 16 12 H -0.28 -6.27 6.65 56.52 0.38 -5.89 16 13 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.25 -5.01 5.72 56.52 0.32 -4.68 16 15 C 0.16 2.69 5.12 -4.04 -0.02 2.67 16 16 C -0.13 -1.83 2.14 -91.04 -0.19 -2.03 16 17 C -0.11 -1.50 4.52 -26.91 -0.12 -1.62 16 18 C -0.60 -6.76 6.35 37.19 0.24 -6.53 16 19 S 2.41 27.90 5.30 -107.50 -0.57 27.33 16 20 O -0.95 -14.03 18.10 -57.82 -1.05 -15.08 16 21 O -0.94 -13.48 17.95 -57.82 -1.04 -14.52 16 22 C -0.60 -5.66 6.35 37.18 0.24 -5.43 16 23 C -0.10 -1.10 5.02 -26.93 -0.14 -1.24 16 24 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 27 H 0.09 1.97 2.82 -51.93 -0.15 1.82 16 28 H 0.09 1.44 5.85 -51.93 -0.30 1.13 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 32 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 33 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 34 H 0.10 1.45 3.62 -51.93 -0.19 1.26 16 35 H 0.13 1.44 8.14 -51.92 -0.42 1.02 16 36 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.09 0.88 8.04 -51.93 -0.42 0.47 16 40 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -34.95 329.31 -6.80 -41.76 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.76 Total: 3.74 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 1.09 Total: -7.09 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.52 Total: -36.99 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -2.80 Total: -48.70 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.24 Total: 14.99 kcal Atomic # 16 Polarization: 27.90 SS G_CDS: -0.57 Total: 27.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.95 -6.80 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116391082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.254 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds