Wall clock time and date at job start Fri Apr 10 2020 14:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34234 * 116.99890 * 2 1 4 4 O 1.20824 * 119.99816 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99852 * 180.02562 * 3 2 1 6 6 N 1.46490 * 109.47107 * 180.02562 * 5 3 2 7 7 C 1.36939 * 120.00105 * 270.14498 * 6 5 3 8 8 H 1.08007 * 120.00101 * 146.82692 * 7 6 5 9 9 C 1.38817 * 120.00093 * 326.84062 * 7 6 5 10 10 N 1.31618 * 120.00176 * 155.79578 * 9 7 6 11 11 Si 1.86796 * 119.99550 * 335.78881 * 9 7 6 12 12 H 1.48502 * 109.47085 * 95.62985 * 11 9 7 13 13 H 1.48499 * 109.47328 * 215.62751 * 11 9 7 14 14 H 1.48500 * 109.47425 * 335.63087 * 11 9 7 15 15 C 1.46504 * 120.00292 * 90.14812 * 6 5 3 16 16 C 1.53001 * 109.47035 * 90.50797 * 15 6 5 17 17 C 1.52589 * 109.23988 * 294.44402 * 16 15 6 18 18 C 1.53056 * 109.97857 * 169.67816 * 17 16 15 19 19 S 1.81672 * 108.96920 * 63.70156 * 18 17 16 20 20 O 1.42099 * 108.66298 * 191.35720 * 19 18 17 21 21 O 1.42094 * 108.74555 * 60.04527 * 19 18 17 22 22 C 1.81672 * 101.30673 * 305.68759 * 19 18 17 23 23 C 1.52585 * 109.24360 * 173.32902 * 16 15 6 24 24 H 1.09006 * 109.46541 * 59.99927 * 1 2 3 25 25 H 1.08996 * 109.47183 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47281 * 300.00460 * 1 2 3 27 27 H 1.09001 * 109.47241 * 59.99557 * 5 3 2 28 28 H 1.09003 * 109.46601 * 300.00259 * 5 3 2 29 29 H 0.96996 * 119.99526 * 180.02562 * 10 9 7 30 30 H 1.08995 * 109.46786 * 330.50695 * 15 6 5 31 31 H 1.08997 * 109.47208 * 210.50887 * 15 6 5 32 32 H 1.08999 * 109.24409 * 53.88171 * 16 15 6 33 33 H 1.09005 * 109.38626 * 289.87237 * 17 16 15 34 34 H 1.08999 * 109.38881 * 49.55773 * 17 16 15 35 35 H 1.09006 * 109.57657 * 303.84788 * 18 17 16 36 36 H 1.08995 * 109.63179 * 183.59077 * 18 17 16 37 37 H 1.09001 * 109.54671 * 294.44037 * 22 19 18 38 38 H 1.08998 * 109.63195 * 174.20447 * 22 19 18 39 39 H 1.08997 * 109.38241 * 310.44278 * 23 16 15 40 40 H 1.09005 * 109.38424 * 70.22944 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1725 3.3379 -1.1854 8 1 3.9503 4.3923 -1.2596 9 6 4.6512 2.6500 -2.2920 10 7 4.4001 3.0972 -3.5042 11 14 5.6519 1.0898 -2.0607 12 1 4.7593 -0.0918 -2.1720 13 1 6.7031 1.0162 -3.1070 14 1 6.2888 1.1044 -0.7193 15 6 4.1931 3.3805 1.2692 16 6 5.6531 3.2260 1.7000 17 6 5.9338 1.7582 2.0084 18 6 7.4378 1.5405 2.1908 19 16 8.0002 2.4858 3.6367 20 8 9.4211 2.4967 3.6482 21 8 7.2990 2.0260 4.7838 22 6 7.4093 4.1534 3.2239 23 6 5.9087 4.0918 2.9303 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9558 0.7809 -0.8908 28 1 3.9564 0.7805 0.8892 29 1 4.7343 2.6163 -4.2774 30 1 3.5421 2.9542 2.0324 31 1 3.9614 4.4380 1.1433 32 1 6.3035 3.5534 0.8890 33 1 5.4130 1.4746 2.9231 34 1 5.5767 1.1406 1.1843 35 1 7.9670 1.8842 1.3020 36 1 7.6380 0.4807 2.3475 37 1 7.9383 4.5204 2.3444 38 1 7.5894 4.8241 4.0640 39 1 5.5340 5.0990 2.7480 40 1 5.3910 3.6629 3.7883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116391082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:23 Heat of formation + Delta-G solvation = -153.032292 kcal Electronic energy + Delta-G solvation = -24606.334858 eV Core-core repulsion = 20934.783062 eV Total energy + Delta-G solvation = -3671.551796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29434 -39.40662 -37.99738 -37.38586 -37.01837 -36.40172 -33.74656 -32.67315 -30.96186 -29.45802 -27.78506 -26.21337 -24.52776 -23.29366 -21.94337 -21.15285 -19.73870 -19.10539 -18.67839 -17.82311 -17.72356 -17.20873 -17.16272 -16.78401 -16.61653 -16.16407 -15.54454 -15.15640 -14.87021 -14.73861 -14.49232 -14.30472 -14.03144 -13.80743 -13.67923 -13.35536 -13.15651 -13.03908 -12.93453 -12.80031 -12.60478 -12.40253 -12.24551 -12.15831 -11.90430 -11.75905 -11.68752 -11.50151 -11.35523 -11.23512 -10.73722 -10.66243 -9.01388 -8.21769 -5.59152 -0.82895 1.30278 1.35181 1.44198 1.57067 1.81302 1.89244 2.40144 2.77762 2.99171 3.04209 3.24856 3.72252 3.78105 3.86705 3.91378 4.09917 4.20249 4.23783 4.29771 4.35005 4.36089 4.38902 4.53143 4.65670 4.69041 4.75492 4.83559 5.00549 5.06899 5.09615 5.18837 5.39043 5.50116 5.54767 5.86601 6.16432 6.77133 7.00955 7.53649 7.90074 8.97425 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.005339 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.040832 B = 5243.637596 C = 5953.028507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.425 3.575 4 O -0.529 6.529 5 C 0.127 3.873 6 N -0.578 5.578 7 C -0.254 4.254 8 H 0.041 0.959 9 C -0.024 4.024 10 N -0.946 5.946 11 Si 0.915 3.085 12 H -0.275 1.275 13 H -0.312 1.312 14 H -0.207 1.207 15 C 0.155 3.845 16 C -0.128 4.128 17 C -0.121 4.121 18 C -0.595 4.595 19 S 2.424 3.576 20 O -0.988 6.988 21 O -0.972 6.972 22 C -0.585 4.585 23 C -0.102 4.102 24 H 0.045 0.955 25 H 0.133 0.867 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.135 0.865 29 H 0.263 0.737 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -4.923 13.809 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.266 3.734 4 O -0.417 6.417 5 C -0.002 4.002 6 N -0.298 5.298 7 C -0.384 4.384 8 H 0.058 0.942 9 C -0.221 4.221 10 N -0.589 5.589 11 Si 0.742 3.258 12 H -0.203 1.203 13 H -0.240 1.240 14 H -0.129 1.129 15 C 0.031 3.969 16 C -0.149 4.149 17 C -0.159 4.159 18 C -0.726 4.726 19 S 2.611 3.389 20 O -0.986 6.986 21 O -0.969 6.969 22 C -0.717 4.717 23 C -0.141 4.141 24 H 0.063 0.937 25 H 0.151 0.849 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.116 0.884 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.980 -4.905 14.448 15.546 hybrid contribution -0.430 -0.036 -1.709 1.763 sum 2.550 -4.941 12.738 13.899 Atomic orbital electron populations 1.23433 0.76180 1.05257 1.01771 1.86567 1.24325 1.34110 1.84267 1.26544 0.94704 0.81014 0.71153 1.90566 1.67591 1.37677 1.45871 1.21647 0.85163 0.88943 1.04418 1.43913 1.74375 1.08335 1.03207 1.18592 1.37586 0.94455 0.87750 0.94169 1.26062 0.99529 1.02046 0.94438 1.70056 1.46357 1.43749 0.98701 0.86354 0.79475 0.79549 0.80434 1.20307 1.24046 1.12864 1.21077 0.93743 0.96812 0.85296 1.21886 1.00021 0.94626 0.98359 1.21638 0.91792 0.97817 1.04697 1.30151 1.06489 1.15821 1.20098 1.07617 0.74102 0.79971 0.77260 1.93525 1.30148 1.87161 1.87734 1.93521 1.75523 1.80550 1.47285 1.30063 1.06727 1.21191 1.13715 1.21304 0.91561 1.03161 0.98079 0.93658 0.84877 0.91915 0.90324 0.84767 0.92843 0.91605 0.92840 0.90093 0.88417 0.89728 0.84071 0.83378 0.83369 0.82810 0.88384 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.38 -12.77 10.57 -51.45 -0.54 -13.31 16 3 C 0.43 17.07 8.03 71.24 0.57 17.64 16 4 O -0.53 -24.80 16.18 21.97 0.36 -24.44 16 5 C 0.13 4.77 4.18 85.64 0.36 5.13 16 6 N -0.58 -23.82 1.47 -706.35 -1.04 -24.86 16 7 C -0.25 -13.29 9.95 84.03 0.84 -12.45 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 9 C -0.02 -1.31 5.30 84.86 0.45 -0.86 16 10 N -0.95 -57.02 13.97 21.65 0.30 -56.71 16 11 Si 0.91 39.41 24.96 68.60 1.71 41.13 16 12 H -0.28 -11.53 6.65 99.48 0.66 -10.87 16 13 H -0.31 -14.18 7.11 99.48 0.71 -13.47 16 14 H -0.21 -7.25 5.72 99.48 0.57 -6.68 16 15 C 0.16 4.95 5.12 86.38 0.44 5.39 16 16 C -0.13 -3.17 2.14 -11.07 -0.02 -3.19 16 17 C -0.12 -2.72 4.52 30.48 0.14 -2.58 16 18 C -0.60 -11.32 6.35 72.00 0.46 -10.87 16 19 S 2.42 49.13 5.30 -56.49 -0.30 48.83 16 20 O -0.99 -27.02 18.10 -127.38 -2.31 -29.32 16 21 O -0.97 -25.13 17.95 -127.38 -2.29 -27.42 16 22 C -0.59 -9.01 6.35 71.99 0.46 -8.55 16 23 C -0.10 -1.85 5.02 30.47 0.15 -1.70 16 24 H 0.04 1.30 8.13 -2.38 -0.02 1.28 16 25 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 27 H 0.08 3.21 2.82 -2.39 -0.01 3.20 16 28 H 0.14 3.79 5.85 -2.39 -0.01 3.78 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.07 1.86 8.07 -2.39 -0.02 1.84 16 31 H 0.05 1.81 7.96 -2.39 -0.02 1.79 16 32 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 33 H 0.10 1.82 8.02 -2.38 -0.02 1.80 16 34 H 0.08 2.14 3.62 -2.39 -0.01 2.13 16 35 H 0.14 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 1.65 8.04 -2.39 -0.02 1.63 16 40 H 0.09 1.49 8.01 -2.38 -0.02 1.48 16 Total: -1.00 -79.05 329.31 1.80 -77.25 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.86 Total: 18.99 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.04 Total: -10.13 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -0.73 Total: -81.57 kcal Atomic # 8 Polarization: -89.72 SS G_CDS: -4.78 Total: -94.50 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.71 Total: 41.13 kcal Atomic # 16 Polarization: 49.13 SS G_CDS: -0.30 Total: 48.83 kcal Total: -79.05 1.80 -77.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116391082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.780 kcal (2) G-P(sol) polarization free energy of solvation -79.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds