Wall clock time and date at job start Fri Apr 10 2020 14:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 117.00218 * 2 1 4 4 O 1.20827 * 119.99982 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00215 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47212 * 180.02562 * 5 3 2 7 7 C 1.36934 * 120.00242 * 95.78744 * 6 5 3 8 8 H 1.07996 * 120.00101 * 166.47795 * 7 6 5 9 9 C 1.38820 * 119.99820 * 346.48230 * 7 6 5 10 10 N 1.31620 * 119.99918 * 335.89747 * 9 7 6 11 11 Si 1.86804 * 119.99789 * 156.17819 * 9 7 6 12 12 H 1.48496 * 109.46935 * 179.72245 * 11 9 7 13 13 H 1.48497 * 109.46942 * 299.72210 * 11 9 7 14 14 H 1.48498 * 109.47390 * 59.72152 * 11 9 7 15 15 C 1.46498 * 119.99969 * 275.78974 * 6 5 3 16 16 C 1.52997 * 109.47228 * 270.00107 * 15 6 5 17 17 H 1.09003 * 109.38296 * 55.21119 * 16 15 6 18 18 C 1.52588 * 109.38373 * 295.52687 * 16 15 6 19 19 C 1.52590 * 110.64197 * 169.85602 * 18 16 15 20 20 C 1.53038 * 109.98775 * 69.98320 * 19 18 16 21 21 S 1.81669 * 108.99964 * 296.35267 * 20 19 18 22 22 O 1.42098 * 108.66271 * 299.96905 * 21 20 19 23 23 O 1.42100 * 108.66298 * 168.62509 * 21 20 19 24 24 C 1.53034 * 109.38784 * 174.99743 * 16 15 6 25 25 H 1.08999 * 109.47022 * 59.99216 * 1 2 3 26 26 H 1.08992 * 109.47342 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46639 * 299.99791 * 1 2 3 28 28 H 1.08997 * 109.47197 * 60.00158 * 5 3 2 29 29 H 1.09001 * 109.46706 * 300.00150 * 5 3 2 30 30 H 0.96996 * 119.99931 * 180.02562 * 10 9 7 31 31 H 1.08998 * 109.47056 * 30.00102 * 15 6 5 32 32 H 1.09003 * 109.47113 * 149.99751 * 15 6 5 33 33 H 1.09005 * 109.24048 * 290.15461 * 18 16 15 34 34 H 1.08994 * 109.24410 * 49.55496 * 18 16 15 35 35 H 1.08996 * 109.38521 * 309.82240 * 19 18 16 36 36 H 1.08998 * 109.38428 * 190.14139 * 19 18 16 37 37 H 1.08995 * 109.55050 * 176.49476 * 20 19 18 38 38 H 1.09000 * 109.54591 * 56.20844 * 20 19 18 39 39 H 1.08998 * 109.55107 * 303.66254 * 24 16 15 40 40 H 1.09001 * 109.54682 * 63.85386 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.2911 3.3017 1.1802 8 1 4.8009 4.2537 1.1715 9 6 3.9496 2.7083 2.3879 10 7 2.9581 1.8442 2.4393 11 14 4.8920 3.1422 3.9413 12 1 4.3318 2.3835 5.0883 13 1 6.3238 2.7894 3.7663 14 1 4.7697 4.5986 4.2040 15 6 4.0663 3.4192 -1.2616 16 6 5.4718 3.2698 -1.8473 17 1 5.7104 2.2112 -1.9496 18 6 6.4827 3.9266 -0.9118 19 6 7.9082 3.5820 -1.3329 20 6 8.2501 4.2867 -2.6477 21 16 7.1603 3.6564 -3.9574 22 8 7.3668 2.2564 -4.0862 23 8 7.2950 4.4890 -5.1010 24 6 5.5222 3.9372 -3.2235 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9558 0.7809 -0.8908 29 1 3.9564 0.7805 0.8892 30 1 2.7192 1.4299 3.2832 31 1 3.3352 3.0215 -1.9655 32 1 3.8587 4.4737 -1.0794 33 1 6.3505 5.0081 -0.9424 34 1 6.3132 3.5732 0.1053 35 1 7.9952 2.5038 -1.4671 36 1 8.6027 3.9057 -0.5577 37 1 9.2889 4.0861 -2.9096 38 1 8.1017 5.3607 -2.5351 39 1 4.7555 3.5052 -3.8667 40 1 5.3477 5.0078 -3.1164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117068426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:30 Heat of formation + Delta-G solvation = -135.313583 kcal Electronic energy + Delta-G solvation = -24511.324482 eV Core-core repulsion = 20840.541027 eV Total energy + Delta-G solvation = -3670.783455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.07426 -37.91388 -36.83176 -35.94699 -35.55905 -34.50485 -32.51223 -30.85394 -28.38253 -27.31725 -26.18215 -25.93467 -22.89807 -21.64908 -20.35502 -19.44047 -18.75006 -17.09402 -16.54621 -16.36169 -16.22231 -15.56862 -15.52695 -15.19951 -14.98131 -14.55329 -14.41134 -13.69845 -13.42411 -13.29628 -12.99302 -12.80319 -12.37265 -12.22403 -12.07789 -11.94094 -11.81070 -11.37566 -11.33795 -11.20282 -11.12601 -10.94036 -10.79449 -10.62056 -10.45331 -10.34564 -10.16259 -9.90711 -9.79352 -9.68856 -9.21022 -8.59356 -7.16982 -6.01941 -3.32222 0.11842 2.73480 3.28949 3.35753 3.37275 3.70643 3.77617 3.94185 4.03809 4.36739 4.64754 4.66898 4.81316 4.91448 5.14335 5.22030 5.33255 5.40367 5.49602 5.71136 5.75153 5.76340 5.81180 5.89764 6.00612 6.05331 6.22938 6.27208 6.34218 6.44187 6.60572 6.81004 6.85195 7.00306 7.57680 7.68554 8.08039 8.90827 9.28137 9.61769 10.04271 11.08661 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005207 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.411031 B = 5376.455951 C = 6792.102474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.382 6.382 3 C 0.463 3.537 4 O -0.509 6.509 5 C 0.184 3.816 6 N -0.564 5.564 7 C -0.261 4.261 8 H 0.086 0.914 9 C 0.004 3.996 10 N -0.898 5.898 11 Si 0.904 3.096 12 H -0.291 1.291 13 H -0.282 1.282 14 H -0.284 1.284 15 C 0.159 3.841 16 C -0.096 4.096 17 H 0.087 0.913 18 C -0.142 4.142 19 C -0.108 4.108 20 C -0.600 4.600 21 S 2.409 3.591 22 O -0.941 6.941 23 O -0.958 6.958 24 C -0.589 4.589 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.259 0.741 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 1.046 -7.523 9.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.299 6.299 3 C 0.303 3.697 4 O -0.394 6.394 5 C 0.054 3.946 6 N -0.283 5.283 7 C -0.390 4.390 8 H 0.103 0.897 9 C -0.195 4.195 10 N -0.542 5.542 11 Si 0.734 3.266 12 H -0.217 1.217 13 H -0.208 1.208 14 H -0.210 1.210 15 C 0.031 3.969 16 C -0.118 4.118 17 H 0.105 0.895 18 C -0.179 4.179 19 C -0.147 4.147 20 C -0.730 4.730 21 S 2.594 3.406 22 O -0.938 6.938 23 O -0.955 6.955 24 C -0.721 4.721 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.136 0.864 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.858 0.937 -8.213 10.131 hybrid contribution -0.274 0.802 1.678 1.880 sum 5.583 1.740 -6.534 8.769 Atomic orbital electron populations 1.22867 0.79785 1.01409 1.01243 1.86555 1.21012 1.36711 1.85629 1.25696 0.93680 0.80180 0.70152 1.90468 1.66791 1.36531 1.45608 1.20449 0.85254 0.86917 1.01956 1.44002 1.74769 1.07073 1.02444 1.19244 1.31556 1.05429 0.82730 0.89675 1.24824 0.96892 0.99894 0.97879 1.69918 1.25388 1.32774 1.26119 0.86327 0.79907 0.77830 0.82549 1.21686 1.20795 1.21004 1.20763 0.91332 0.96891 0.87932 1.21593 1.01131 0.99799 0.89292 0.89505 1.21946 0.91130 1.00777 1.04025 1.21332 0.98881 1.00696 0.93758 1.30209 1.15395 1.11818 1.15580 1.08186 0.79737 0.75787 0.76915 1.93571 1.84680 1.29700 1.85897 1.93559 1.85819 1.69992 1.46098 1.30244 1.21555 1.10804 1.09452 0.93618 0.90056 0.92857 0.92765 0.86420 0.93086 0.93923 0.92598 0.91831 0.86171 0.90008 0.90063 0.85629 0.85303 0.85141 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.79 16 2 O -0.38 -8.08 10.57 -39.25 -0.41 -8.49 16 3 C 0.46 10.88 6.24 36.01 0.22 11.11 16 4 O -0.51 -13.49 16.00 -18.75 -0.30 -13.79 16 5 C 0.18 4.02 5.49 -5.19 -0.03 3.99 16 6 N -0.56 -12.31 1.90 -174.61 -0.33 -12.65 16 7 C -0.26 -6.23 7.86 -15.06 -0.12 -6.35 16 8 H 0.09 1.93 7.06 -52.49 -0.37 1.56 16 9 C 0.00 0.10 4.84 -17.43 -0.08 0.01 16 10 N -0.90 -24.11 9.42 55.49 0.52 -23.58 16 11 Si 0.90 20.02 29.62 -169.99 -5.03 14.99 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.16 2.86 5.15 -4.04 -0.02 2.84 16 16 C -0.10 -1.36 2.22 -90.81 -0.20 -1.56 16 17 H 0.09 1.27 8.01 -51.93 -0.42 0.85 16 18 C -0.14 -1.89 4.59 -27.15 -0.12 -2.01 16 19 C -0.11 -1.20 5.73 -26.92 -0.15 -1.36 16 20 C -0.60 -5.66 6.35 37.18 0.24 -5.43 16 21 S 2.41 28.37 5.31 -107.50 -0.57 27.80 16 22 O -0.94 -14.29 17.94 -57.81 -1.04 -15.33 16 23 O -0.96 -14.02 18.10 -57.81 -1.05 -15.07 16 24 C -0.59 -6.63 5.62 37.18 0.21 -6.42 16 25 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 28 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 29 H 0.12 2.77 6.22 -51.93 -0.32 2.45 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 33 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.12 1.95 5.33 -51.93 -0.28 1.67 16 35 H 0.08 0.93 8.01 -51.93 -0.42 0.52 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -33.87 335.19 -8.15 -42.02 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.00 Total: 2.43 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 1.00 Total: -3.39 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.19 Total: -36.23 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -2.80 Total: -52.68 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Atomic # 16 Polarization: 28.37 SS G_CDS: -0.57 Total: 27.80 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.87 -8.15 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117068426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.289 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds