Wall clock time and date at job start Fri Apr 10 2020 14:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99742 * 2 1 4 4 O 1.20825 * 120.00064 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99977 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47318 * 180.02562 * 5 3 2 7 7 S 1.81404 * 109.46891 * 180.02562 * 6 5 3 8 8 O 1.42096 * 110.54371 * 68.37685 * 7 6 5 9 9 O 1.42101 * 110.54476 * 291.61832 * 7 6 5 10 10 N 1.65606 * 104.44761 * 179.97438 * 7 6 5 11 11 C 1.46498 * 119.99853 * 64.99654 * 10 7 6 12 12 H 1.08993 * 109.35800 * 25.17876 * 11 10 7 13 13 C 1.52955 * 109.41158 * 145.00188 * 11 10 7 14 14 C 1.53230 * 109.40686 * 183.70159 * 13 11 10 15 15 C 1.51264 * 108.54060 * 305.37674 * 14 13 11 16 16 C 1.37879 * 120.85152 * 231.32414 * 15 14 13 17 17 N 1.31510 * 120.00089 * 180.02562 * 16 15 14 18 18 Si 1.86805 * 119.99746 * 0.02562 * 16 15 14 19 19 H 1.48493 * 109.47163 * 90.00112 * 18 16 15 20 20 H 1.48500 * 109.46726 * 210.00295 * 18 16 15 21 21 H 1.48504 * 109.46927 * 329.99943 * 18 16 15 22 22 C 1.51270 * 118.29993 * 51.34019 * 15 14 13 23 23 C 1.53232 * 108.69741 * 308.56051 * 22 15 14 24 24 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46486 * 299.99723 * 1 2 3 26 26 H 1.08997 * 109.47314 * 59.99319 * 1 2 3 27 27 H 1.09001 * 109.47012 * 59.99781 * 5 3 2 28 28 H 1.09003 * 109.47169 * 300.00551 * 5 3 2 29 29 H 1.08994 * 109.47271 * 59.99548 * 6 5 3 30 30 H 1.09002 * 109.46752 * 299.99538 * 6 5 3 31 31 H 0.97000 * 120.00064 * 245.00494 * 10 7 6 32 32 H 1.09007 * 109.48519 * 63.72753 * 13 11 10 33 33 H 1.09003 * 109.48614 * 303.68518 * 13 11 10 34 34 H 1.09001 * 109.62928 * 185.65483 * 14 13 11 35 35 H 1.09001 * 109.61923 * 65.08898 * 14 13 11 36 36 H 0.97004 * 120.00027 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.62532 * 68.37253 * 22 15 14 38 38 H 1.09001 * 109.62715 * 188.74940 * 22 15 14 39 39 H 1.08993 * 109.48218 * 174.70373 * 23 22 15 40 40 H 1.08997 * 109.48080 * 294.74309 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 16 5.8116 2.8370 -0.0013 8 8 6.3342 2.3744 -1.2390 9 8 6.3363 2.3726 1.2349 10 7 6.1404 4.4601 -0.0010 11 6 5.7611 5.2841 1.1494 12 1 5.7040 4.6575 2.0394 13 6 6.8122 6.3747 1.3621 14 6 6.4647 7.1785 2.6196 15 6 5.0493 7.6948 2.4845 16 6 4.7616 9.0288 2.6808 17 7 3.5249 9.4595 2.5595 18 14 6.1284 10.2244 3.1190 19 1 6.7101 10.7888 1.8747 20 1 5.5763 11.3240 3.9505 21 1 7.1851 9.5108 3.8802 22 6 3.9576 6.7099 2.1288 23 6 4.3914 5.9227 0.8878 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 3.6107 3.2357 0.8906 30 1 3.6100 3.2368 -0.8894 31 1 6.5839 4.8653 -0.7626 32 1 6.8265 7.0394 0.4983 33 1 7.7933 5.9154 1.4838 34 1 7.1527 8.0180 2.7193 35 1 6.5377 6.5355 3.4967 36 1 3.3224 10.3980 2.6980 37 1 3.7984 6.0236 2.9606 38 1 3.0338 7.2482 1.9165 39 1 3.6574 5.1454 0.6754 40 1 4.4627 6.5983 0.0354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188403746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:13 Heat of formation + Delta-G solvation = -176.429963 kcal Electronic energy + Delta-G solvation = -23760.142885 eV Core-core repulsion = 20087.576490 eV Total energy + Delta-G solvation = -3672.566395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69288 -37.63356 -36.95295 -36.86790 -35.90874 -33.74356 -33.64700 -31.30691 -29.72925 -28.35017 -26.91771 -25.34642 -22.14041 -21.62962 -21.03953 -19.75285 -19.12420 -18.30527 -17.46524 -17.04580 -16.70699 -16.25643 -15.98506 -15.82363 -15.02058 -14.49155 -14.40324 -13.83096 -13.38712 -13.21607 -13.12266 -12.95853 -12.60220 -12.32387 -12.27282 -12.19797 -12.07111 -11.95566 -11.83365 -11.42728 -11.19191 -11.07560 -10.95574 -10.92894 -10.77805 -10.66470 -10.26534 -10.02039 -9.64542 -9.35255 -8.97093 -8.51458 -8.49570 -6.14284 -4.05658 0.27191 1.93908 2.38623 2.85799 3.24512 3.33855 3.34938 3.74942 4.08708 4.21788 4.34807 4.58558 4.59336 4.83511 4.92084 4.92982 5.12057 5.20074 5.26052 5.35321 5.60936 5.76149 5.90638 5.99786 6.08853 6.41881 6.51445 6.64056 6.74218 6.93947 6.98625 7.10217 7.27401 7.36768 7.46961 7.61040 7.68806 7.78534 8.33052 8.92301 9.50118 10.95119 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.004056 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.457536 B = 6901.204243 C = 8146.472132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.493 6.493 5 C -0.104 4.104 6 C -0.632 4.632 7 S 2.616 3.384 8 O -0.966 6.966 9 O -0.953 6.953 10 N -1.110 6.110 11 C 0.152 3.848 12 H 0.083 0.917 13 C -0.107 4.107 14 C -0.016 4.016 15 C -0.491 4.491 16 C 0.076 3.924 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.266 1.266 22 C 0.010 3.990 23 C -0.131 4.131 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.414 0.586 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.006 0.994 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 -16.039 -6.246 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.379 6.379 5 C -0.143 4.143 6 C -0.759 4.759 7 S 2.707 3.293 8 O -0.957 6.957 9 O -0.943 6.943 10 N -0.870 5.870 11 C 0.047 3.953 12 H 0.101 0.899 13 C -0.147 4.147 14 C -0.054 4.054 15 C -0.510 4.510 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.191 1.191 22 C -0.028 4.028 23 C -0.170 4.170 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.249 0.751 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.404 -16.362 -6.078 17.511 hybrid contribution -0.168 1.402 -0.192 1.425 sum -1.573 -14.960 -6.269 16.296 Atomic orbital electron populations 1.23305 0.75951 1.03769 1.02863 1.86486 1.23749 1.33224 1.84287 1.23344 0.91581 0.81541 0.72809 1.90733 1.66828 1.36180 1.44116 1.20999 0.90243 0.95750 1.07281 1.30838 1.28844 1.02160 1.14051 1.04718 0.76746 0.73580 0.74256 1.93581 1.76799 1.80059 1.45215 1.93613 1.75357 1.79810 1.45504 1.55668 1.74526 1.27734 1.29044 1.21082 0.96300 0.92448 0.85451 0.89922 1.21810 0.95349 0.96256 1.01306 1.19759 0.96843 0.95885 0.92905 1.20023 0.91374 0.92759 1.46845 1.24851 0.95475 0.97659 0.94654 1.69834 1.18339 1.15697 1.48697 0.86656 0.82377 0.80466 0.78828 1.20433 1.21666 1.19120 1.19363 0.98261 0.94145 0.91055 1.22357 0.93627 0.98732 1.02333 0.87979 0.91627 0.91752 0.86184 0.86023 0.83324 0.83838 0.75125 0.92328 0.93923 0.94770 0.96038 0.92543 0.97599 0.92125 0.94528 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.65 10.57 -39.26 -0.41 -4.07 16 3 C 0.47 5.45 7.96 36.00 0.29 5.73 16 4 O -0.49 -7.35 15.73 -18.75 -0.29 -7.64 16 5 C -0.10 -1.00 5.82 -27.89 -0.16 -1.16 16 6 C -0.63 -7.19 4.41 37.16 0.16 -7.03 16 7 S 2.62 34.65 5.44 -107.50 -0.58 34.06 16 8 O -0.97 -14.38 18.08 -57.54 -1.04 -15.42 16 9 O -0.95 -15.46 17.39 -57.54 -1.00 -16.46 16 10 N -1.11 -15.79 5.36 -4.75 -0.03 -15.82 16 11 C 0.15 2.67 2.59 -67.76 -0.18 2.50 16 12 H 0.08 1.48 7.47 -51.93 -0.39 1.09 16 13 C -0.11 -2.03 5.47 -26.64 -0.15 -2.17 16 14 C -0.02 -0.34 5.59 -27.49 -0.15 -0.50 16 15 C -0.49 -12.38 5.52 -98.92 -0.55 -12.92 16 16 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 17 N -0.89 -24.95 12.73 55.43 0.71 -24.25 16 18 Si 0.89 20.54 27.27 -169.99 -4.64 15.91 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -5.96 6.46 56.52 0.37 -5.60 16 22 C 0.01 0.23 5.95 -27.48 -0.16 0.07 16 23 C -0.13 -2.52 5.55 -26.41 -0.15 -2.67 16 24 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.15 1.81 6.78 -51.93 -0.35 1.46 16 30 H 0.14 1.52 8.10 -51.92 -0.42 1.10 16 31 H 0.41 5.18 8.80 -34.48 -0.30 4.88 16 32 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.06 1.59 7.07 -51.93 -0.37 1.23 16 39 H 0.04 0.61 5.69 -51.93 -0.30 0.32 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -33.41 336.50 -8.07 -41.48 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.77 Total: 2.01 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.07 Total: -14.88 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.68 Total: -40.07 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -2.75 Total: -43.58 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.64 Total: 15.91 kcal Atomic # 16 Polarization: 34.65 SS G_CDS: -0.58 Total: 34.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.41 -8.07 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188403746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.952 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds