Wall clock time and date at job start Fri Apr 10 2020 14:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00185 * 2 1 4 4 O 1.20822 * 120.00200 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99775 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47212 * 180.02562 * 5 3 2 7 7 S 1.81399 * 109.47655 * 180.02562 * 6 5 3 8 8 O 1.42101 * 110.53983 * 61.23230 * 7 6 5 9 9 O 1.42097 * 110.54372 * 284.48424 * 7 6 5 10 10 N 1.65600 * 104.45338 * 172.85396 * 7 6 5 11 11 C 1.46499 * 119.99433 * 64.62818 * 10 7 6 12 12 C 1.50702 * 110.01794 * 53.88030 * 11 10 7 13 13 H 1.08001 * 119.99620 * 245.27089 * 12 11 10 14 14 C 1.37873 * 120.00090 * 65.27844 * 12 11 10 15 15 N 1.31517 * 120.00132 * 183.74286 * 14 12 11 16 16 Si 1.86808 * 119.99867 * 3.73668 * 14 12 11 17 17 H 1.48495 * 109.47122 * 86.91230 * 16 14 12 18 18 H 1.48502 * 109.46696 * 206.90779 * 16 14 12 19 19 H 1.48498 * 109.46992 * 326.90756 * 16 14 12 20 20 C 1.54264 * 110.03590 * 292.43694 * 11 10 7 21 21 C 1.54891 * 104.20022 * 217.11216 * 20 11 10 22 22 C 1.54889 * 102.74720 * 37.93946 * 21 20 11 23 23 C 1.53876 * 110.02913 * 175.27087 * 11 10 7 24 24 H 1.09003 * 109.46392 * 299.99956 * 1 2 3 25 25 H 1.08992 * 109.47300 * 59.99226 * 1 2 3 26 26 H 1.08995 * 109.47456 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47285 * 60.00915 * 5 3 2 28 28 H 1.08999 * 109.47693 * 300.00219 * 5 3 2 29 29 H 1.08998 * 109.47042 * 60.00265 * 6 5 3 30 30 H 1.09001 * 109.47356 * 300.00525 * 6 5 3 31 31 H 0.96992 * 120.00249 * 244.62820 * 10 7 6 32 32 H 0.96996 * 119.99855 * 180.02562 * 15 14 12 33 33 H 1.09009 * 110.48206 * 335.78843 * 20 11 10 34 34 H 1.09000 * 110.48903 * 98.42513 * 20 11 10 35 35 H 1.09001 * 110.74898 * 279.62248 * 21 20 11 36 36 H 1.08998 * 110.91470 * 156.32654 * 21 20 11 37 37 H 1.08999 * 110.48097 * 203.38565 * 22 21 20 38 38 H 1.08996 * 110.49022 * 80.74107 * 22 21 20 39 39 H 1.08996 * 110.03129 * 238.56647 * 23 11 10 40 40 H 1.08995 * 110.03359 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7418 0.0002 7 16 5.8118 2.8368 -0.0013 8 8 6.3422 2.2243 -1.1687 9 8 6.3283 2.5295 1.2864 10 7 6.1411 4.4475 -0.1998 11 6 5.7475 5.4083 0.8337 12 6 6.2978 4.9825 2.1705 13 1 5.6247 4.6949 2.9646 14 6 7.6604 4.9602 2.3796 15 7 8.1434 4.5189 3.5204 16 14 8.8204 5.5568 1.0424 17 1 9.0092 7.0243 1.1694 18 1 10.1319 4.8749 1.1846 19 1 8.2423 5.2455 -0.2895 20 6 4.2097 5.5103 0.9024 21 6 3.9406 7.0091 1.1857 22 6 5.0242 7.7176 0.3354 23 6 6.2654 6.8118 0.4733 24 1 -0.3632 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 3.9558 0.7808 -0.8909 28 1 3.9565 0.7803 0.8891 29 1 3.6110 3.2354 0.8907 30 1 3.6102 3.2366 -0.8893 31 1 6.5946 4.7548 -1.0002 32 1 9.1020 4.5036 3.6677 33 1 3.7651 5.2159 -0.0484 34 1 3.8223 4.8932 1.7130 35 1 4.0733 7.2319 2.2444 36 1 2.9421 7.2945 0.8546 37 1 5.2312 8.7113 0.7325 38 1 4.7112 7.7798 -0.7068 39 1 6.9140 7.1852 1.2657 40 1 6.8100 6.7779 -0.4703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188420631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:09 Heat of formation + Delta-G solvation = -145.094107 kcal Electronic energy + Delta-G solvation = -24853.774930 eV Core-core repulsion = 21182.567360 eV Total energy + Delta-G solvation = -3671.207570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51813 -38.21359 -36.69581 -36.13323 -34.91064 -33.31475 -32.88406 -31.89128 -28.51568 -27.99145 -27.33923 -24.98391 -23.78131 -21.02757 -20.23220 -19.33526 -18.55820 -17.94895 -17.05173 -16.82274 -16.58777 -16.14623 -15.51877 -15.31021 -14.80127 -14.72146 -14.20620 -13.91366 -13.58047 -13.03117 -12.98896 -12.74720 -12.51709 -12.25773 -12.08113 -11.79096 -11.49076 -11.40863 -11.15340 -11.05127 -10.94915 -10.93869 -10.65036 -10.56620 -10.42004 -10.26691 -10.09587 -9.94936 -9.85104 -9.70975 -9.18242 -8.49654 -8.15571 -6.07498 -4.06709 1.04509 2.12126 2.60722 3.26728 3.35854 3.43480 3.69816 4.37864 4.44181 4.58508 4.74266 4.92405 4.93429 4.99820 5.14876 5.22185 5.26703 5.37193 5.38861 5.46348 5.55301 5.76909 5.98850 6.06321 6.20715 6.24286 6.26272 6.33387 6.37841 6.49833 6.52489 6.71734 6.79821 6.96074 7.14340 7.64743 7.67810 8.07123 8.45871 8.98082 9.56640 11.04808 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.005628 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.840601 B = 4973.502221 C = 5653.862910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.469 3.531 4 O -0.500 6.500 5 C -0.103 4.103 6 C -0.641 4.641 7 S 2.596 3.404 8 O -0.996 6.996 9 O -0.901 6.901 10 N -1.102 6.102 11 C 0.262 3.738 12 C -0.504 4.504 13 H 0.084 0.916 14 C 0.101 3.899 15 N -0.868 5.868 16 Si 0.871 3.129 17 H -0.282 1.282 18 H -0.298 1.298 19 H -0.251 1.251 20 C -0.137 4.137 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.130 4.130 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.396 0.604 32 H 0.264 0.736 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 -2.894 -7.997 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.386 6.386 5 C -0.141 4.141 6 C -0.765 4.765 7 S 2.686 3.314 8 O -0.986 6.986 9 O -0.890 6.890 10 N -0.862 5.862 11 C 0.178 3.822 12 C -0.545 4.545 13 H 0.102 0.898 14 C -0.106 4.106 15 N -0.504 5.504 16 Si 0.700 3.300 17 H -0.208 1.208 18 H -0.226 1.226 19 H -0.176 1.176 20 C -0.176 4.176 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.164 0.836 30 H 0.147 0.853 31 H 0.230 0.770 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.089 -3.432 -7.660 13.908 hybrid contribution 0.016 0.811 -1.098 1.365 sum -11.073 -2.621 -8.758 14.359 Atomic orbital electron populations 1.23265 0.76390 1.03624 1.02612 1.86511 1.23436 1.33526 1.84311 1.23565 0.91840 0.81290 0.72273 1.90667 1.66972 1.36276 1.44708 1.21022 0.89299 0.96797 1.07021 1.31144 1.31735 1.00926 1.12722 1.05969 0.76362 0.74228 0.74803 1.93496 1.76660 1.76452 1.51962 1.93777 1.73076 1.83162 1.39035 1.56962 1.72936 1.25896 1.30410 1.18955 0.90268 0.85969 0.87043 1.21050 0.92922 1.45439 0.95100 0.89768 1.24861 0.98119 0.93001 0.94660 1.69888 1.13220 1.42975 1.24279 0.87311 0.80257 0.78179 0.84278 1.20850 1.22587 1.17581 1.23083 0.97219 0.97052 1.00254 1.22318 0.97071 0.95190 1.00495 1.22277 0.96041 0.98244 0.98987 1.22756 0.97622 0.96056 1.00562 0.91792 0.91939 0.88111 0.86494 0.86218 0.83592 0.85310 0.77048 0.92611 0.92549 0.91228 0.90950 0.92841 0.92450 0.92658 0.90240 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.35 10.56 -39.24 -0.41 -4.76 16 3 C 0.47 6.50 7.96 36.01 0.29 6.79 16 4 O -0.50 -8.10 15.73 -18.75 -0.29 -8.39 16 5 C -0.10 -1.36 5.82 -27.88 -0.16 -1.53 16 6 C -0.64 -9.82 3.70 37.16 0.14 -9.68 16 7 S 2.60 50.53 5.41 -107.50 -0.58 49.95 16 8 O -1.00 -20.61 18.08 -57.54 -1.04 -21.65 16 9 O -0.90 -21.68 15.26 -57.54 -0.88 -22.56 16 10 N -1.10 -21.68 3.80 0.51 0.00 -21.68 16 11 C 0.26 5.39 0.58 -131.85 -0.08 5.31 16 12 C -0.50 -12.89 6.30 -34.44 -0.22 -13.11 16 13 H 0.08 2.36 7.74 -52.49 -0.41 1.95 16 14 C 0.10 2.77 4.92 -17.82 -0.09 2.68 16 15 N -0.87 -25.90 13.96 55.43 0.77 -25.13 16 16 Si 0.87 21.03 23.64 -169.99 -4.02 17.02 16 17 H -0.28 -6.52 6.91 56.52 0.39 -6.13 16 18 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.25 -5.48 4.48 56.52 0.25 -5.22 16 20 C -0.14 -2.41 4.12 -25.07 -0.10 -2.51 16 21 C -0.11 -1.80 6.91 -24.74 -0.17 -1.97 16 22 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 23 C -0.13 -2.49 4.11 -25.61 -0.11 -2.59 16 24 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.15 2.32 5.70 -51.93 -0.30 2.02 16 30 H 0.13 1.77 7.68 -51.92 -0.40 1.37 16 31 H 0.40 7.15 6.87 -34.47 -0.24 6.92 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.06 0.88 6.66 -51.92 -0.35 0.53 16 34 H 0.07 1.26 6.42 -51.93 -0.33 0.93 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.68 5.52 -51.93 -0.29 1.39 16 40 H 0.05 0.92 6.33 -51.93 -0.33 0.59 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -34.19 321.20 -6.94 -41.13 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.73 Total: 8.49 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 0.40 Total: -17.26 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.78 Total: -46.80 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -2.63 Total: -57.37 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.02 Total: 17.02 kcal Atomic # 16 Polarization: 50.53 SS G_CDS: -0.58 Total: 49.95 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.19 -6.94 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188420631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.962 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds