Wall clock time and date at job start Fri Apr 10 2020 14:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 7 7 N 1.46506 * 109.47418 * 180.02562 * 5 3 2 8 8 S 1.65596 * 120.00281 * 94.99641 * 7 5 3 9 9 O 1.42098 * 106.40381 * 178.54223 * 8 7 5 10 10 O 1.42103 * 106.40111 * 311.46001 * 8 7 5 11 11 C 1.76198 * 107.22072 * 64.99972 * 8 7 5 12 12 H 1.08004 * 119.99862 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00300 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00188 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00009 * 359.97438 * 13 11 8 16 16 H 1.48503 * 109.46952 * 89.99799 * 15 13 11 17 17 H 1.48499 * 109.47388 * 210.00282 * 15 13 11 18 18 H 1.48505 * 109.47141 * 330.00258 * 15 13 11 19 19 C 1.53000 * 109.47495 * 59.99416 * 5 3 2 20 20 C 1.53006 * 109.46588 * 60.00415 * 19 5 3 21 21 C 1.53000 * 109.46588 * 179.97438 * 20 19 5 22 22 C 1.52999 * 109.47002 * 60.00305 * 21 20 19 23 23 C 1.52998 * 109.47310 * 299.99119 * 22 21 20 24 24 C 1.52999 * 109.47002 * 300.00720 * 19 5 3 25 25 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 26 26 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 28 28 H 0.97000 * 119.99252 * 274.99604 * 7 5 3 29 29 H 0.96998 * 120.00179 * 180.02562 * 14 13 11 30 30 H 1.08994 * 109.47081 * 180.02562 * 19 5 3 31 31 H 1.09004 * 109.46892 * 300.00052 * 20 19 5 32 32 H 1.08998 * 109.47144 * 60.00447 * 20 19 5 33 33 H 1.08994 * 109.47539 * 299.99631 * 21 20 19 34 34 H 1.09001 * 109.46747 * 179.97438 * 21 20 19 35 35 H 1.09008 * 109.47133 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47529 * 59.99875 * 22 21 20 37 37 H 1.08994 * 109.47441 * 300.00810 * 23 22 21 38 38 H 1.08998 * 109.47254 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.46780 * 299.99257 * 24 19 5 40 40 H 1.08994 * 109.47529 * 59.99875 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8893 7 7 3.9817 2.6798 0.0002 8 16 4.3369 3.4375 1.4291 9 8 4.7335 4.7603 1.0942 10 8 3.2633 3.1486 2.3141 11 6 5.7611 2.6457 2.0995 12 1 6.2221 1.8250 1.5700 13 6 6.2870 3.0739 3.2999 14 7 7.3503 2.4832 3.8000 15 14 5.4901 4.4938 4.2153 16 1 4.4549 3.9674 5.1408 17 1 6.5236 5.2242 4.9924 18 1 4.8581 5.4189 3.2405 19 6 4.1130 0.5815 -1.2501 20 6 3.5655 1.2753 -2.4990 21 6 4.1126 0.5823 -3.7485 22 6 3.6793 -0.8850 -3.7489 23 6 4.2269 -1.5789 -2.5001 24 6 3.6791 -0.8857 -1.2501 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0487 3.1661 -0.8365 29 1 7.7201 2.7841 4.6447 30 1 5.2015 0.6382 -1.2502 31 1 2.4769 1.2182 -2.4986 32 1 3.8746 2.3205 -2.4990 33 1 5.2011 0.6398 -3.7487 34 1 3.7222 1.0763 -4.6383 35 1 4.0688 -1.3787 -4.6394 36 1 2.5909 -0.9425 -3.7488 37 1 5.3153 -1.5214 -2.5002 38 1 3.9178 -2.6241 -2.5001 39 1 4.0692 -1.3800 -0.3604 40 1 2.5907 -0.9428 -1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:10 Heat of formation + Delta-G solvation = -183.212861 kcal Electronic energy + Delta-G solvation = -24983.103349 eV Core-core repulsion = 21310.242826 eV Total energy + Delta-G solvation = -3672.860523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61599 -38.43627 -36.41742 -35.61374 -34.68423 -34.42657 -33.06746 -30.97549 -30.48319 -28.00618 -26.47216 -25.74440 -22.63437 -22.28560 -20.66626 -19.65857 -19.23198 -17.57653 -17.24487 -16.98279 -16.51089 -16.09272 -15.74541 -14.98974 -14.74928 -14.22302 -13.99618 -13.96109 -13.78404 -13.40584 -13.27976 -12.92646 -12.83566 -12.47878 -12.16784 -12.07906 -11.72820 -11.44795 -11.31914 -11.22453 -11.08767 -10.85074 -10.65541 -10.62319 -10.50855 -10.42944 -10.24879 -10.15678 -10.01320 -9.84341 -9.32379 -9.23394 -8.76316 -6.83838 -5.39204 1.95646 2.53102 2.91758 3.06913 3.17490 3.27488 3.94246 4.17818 4.54278 4.58191 4.68313 4.73693 4.94685 5.13916 5.17036 5.20235 5.27481 5.29856 5.34299 5.40969 5.50857 5.56839 5.59902 5.62446 5.67921 5.85888 5.98063 6.02287 6.12883 6.14822 6.20815 6.23689 6.31213 6.43837 6.49572 6.65578 7.42867 7.56287 8.06293 8.14826 8.66721 10.27861 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.005546 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.958930 B = 5047.073794 C = 5583.185932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.448 3.552 4 O -0.490 6.490 5 C 0.177 3.823 6 H 0.131 0.869 7 N -1.099 6.099 8 S 2.671 3.329 9 O -1.003 7.003 10 O -1.003 7.003 11 C -1.017 5.017 12 H 0.124 0.876 13 C 0.155 3.845 14 N -0.820 5.820 15 Si 0.800 3.200 16 H -0.245 1.245 17 H -0.254 1.254 18 H -0.220 1.220 19 C -0.088 4.088 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.128 4.128 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.410 0.590 29 H 0.281 0.719 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 -9.359 -12.538 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.288 3.712 4 O -0.375 6.375 5 C 0.066 3.934 6 H 0.148 0.852 7 N -0.853 5.853 8 S 2.772 3.228 9 O -0.993 6.993 10 O -0.993 6.993 11 C -1.152 5.152 12 H 0.142 0.858 13 C -0.065 4.065 14 N -0.449 5.449 15 Si 0.619 3.381 16 H -0.169 1.169 17 H -0.178 1.178 18 H -0.142 1.142 19 C -0.108 4.108 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.166 4.166 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.244 0.756 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.050 -8.431 -11.875 16.640 hybrid contribution 0.117 0.433 0.264 0.521 sum -7.933 -7.998 -11.611 16.178 Atomic orbital electron populations 1.23219 0.77560 1.03165 1.02435 1.86596 1.22574 1.33562 1.84346 1.24606 0.92786 0.81489 0.72330 1.90641 1.66651 1.36356 1.43854 1.20280 0.86125 0.84291 1.02706 0.85151 1.55583 1.83928 1.19113 1.26697 1.01630 0.76007 0.73411 0.71703 1.93479 1.84621 1.37859 1.83390 1.93431 1.57435 1.85416 1.62992 1.30436 1.33315 1.33717 1.17705 0.85791 1.24386 0.92661 0.94568 0.94880 1.69977 1.18482 1.37906 1.18538 0.87886 0.81915 0.83760 0.84493 1.16913 1.17800 1.14236 1.21448 1.02084 0.95223 0.92001 1.21655 1.00397 0.99617 0.94158 1.21499 1.01112 0.95507 0.97276 1.21548 1.00736 0.95621 0.97819 1.21513 1.00634 0.98856 0.94365 1.21869 1.03016 0.93473 0.98235 0.92339 0.88442 0.91901 0.75612 0.90821 0.88262 0.92183 0.91367 0.91595 0.92141 0.92345 0.92206 0.91899 0.92016 0.91031 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.35 -5.07 7.48 -39.24 -0.29 -5.36 16 3 C 0.45 7.87 5.99 36.00 0.22 8.09 16 4 O -0.49 -10.08 16.18 -18.76 -0.30 -10.39 16 5 C 0.18 3.01 2.54 -69.08 -0.18 2.84 16 6 H 0.13 2.26 7.85 -51.92 -0.41 1.85 16 7 N -1.10 -21.45 4.92 -5.88 -0.03 -21.47 16 8 S 2.67 67.66 4.15 -107.50 -0.45 67.22 16 9 O -1.00 -27.45 16.02 -57.17 -0.92 -28.37 16 10 O -1.00 -27.58 16.59 -57.17 -0.95 -28.53 16 11 C -1.02 -27.70 10.11 30.60 0.31 -27.39 16 12 H 0.12 3.30 8.06 -52.48 -0.42 2.88 16 13 C 0.15 4.40 5.47 -17.82 -0.10 4.30 16 14 N -0.82 -23.24 13.96 55.43 0.77 -22.46 16 15 Si 0.80 20.67 26.54 -169.99 -4.51 16.16 16 16 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.25 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.22 -5.87 5.61 56.52 0.32 -5.55 16 19 C -0.09 -1.14 2.20 -90.62 -0.20 -1.34 16 20 C -0.12 -1.43 4.77 -26.73 -0.13 -1.56 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 23 C -0.12 -1.08 5.93 -26.70 -0.16 -1.24 16 24 C -0.13 -1.43 4.69 -26.70 -0.13 -1.56 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.41 6.96 7.03 -34.47 -0.24 6.72 16 29 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 32 H 0.07 0.82 6.51 -51.93 -0.34 0.48 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.00 5.32 -51.93 -0.28 0.72 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -34.17 329.61 -7.25 -41.42 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.93 Total: 5.78 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 0.39 Total: -18.96 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.74 Total: -43.94 kcal Atomic # 8 Polarization: -70.19 SS G_CDS: -2.46 Total: -72.65 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.51 Total: 16.16 kcal Atomic # 16 Polarization: 67.66 SS G_CDS: -0.45 Total: 67.22 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.17 -7.25 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.792 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds