Wall clock time and date at job start Fri Apr 10 2020 14:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 7 7 N 1.46506 * 109.47418 * 180.02562 * 5 3 2 8 8 S 1.65596 * 120.00281 * 94.99641 * 7 5 3 9 9 O 1.42098 * 106.40381 * 178.54223 * 8 7 5 10 10 O 1.42103 * 106.40111 * 311.46001 * 8 7 5 11 11 C 1.76198 * 107.22072 * 64.99972 * 8 7 5 12 12 H 1.08004 * 119.99862 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00300 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00188 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00009 * 359.97438 * 13 11 8 16 16 H 1.48503 * 109.46952 * 89.99799 * 15 13 11 17 17 H 1.48499 * 109.47388 * 210.00282 * 15 13 11 18 18 H 1.48505 * 109.47141 * 330.00258 * 15 13 11 19 19 C 1.53000 * 109.47495 * 59.99416 * 5 3 2 20 20 C 1.53006 * 109.46588 * 60.00415 * 19 5 3 21 21 C 1.53000 * 109.46588 * 179.97438 * 20 19 5 22 22 C 1.52999 * 109.47002 * 60.00305 * 21 20 19 23 23 C 1.52998 * 109.47310 * 299.99119 * 22 21 20 24 24 C 1.52999 * 109.47002 * 300.00720 * 19 5 3 25 25 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 26 26 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 28 28 H 0.97000 * 119.99252 * 274.99604 * 7 5 3 29 29 H 0.96998 * 120.00179 * 180.02562 * 14 13 11 30 30 H 1.08994 * 109.47081 * 180.02562 * 19 5 3 31 31 H 1.09004 * 109.46892 * 300.00052 * 20 19 5 32 32 H 1.08998 * 109.47144 * 60.00447 * 20 19 5 33 33 H 1.08994 * 109.47539 * 299.99631 * 21 20 19 34 34 H 1.09001 * 109.46747 * 179.97438 * 21 20 19 35 35 H 1.09008 * 109.47133 * 179.97438 * 22 21 20 36 36 H 1.08994 * 109.47529 * 59.99875 * 22 21 20 37 37 H 1.08994 * 109.47441 * 300.00810 * 23 22 21 38 38 H 1.08998 * 109.47254 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.46780 * 299.99257 * 24 19 5 40 40 H 1.08994 * 109.47529 * 59.99875 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8893 7 7 3.9817 2.6798 0.0002 8 16 4.3369 3.4375 1.4291 9 8 4.7335 4.7603 1.0942 10 8 3.2633 3.1486 2.3141 11 6 5.7611 2.6457 2.0995 12 1 6.2221 1.8250 1.5700 13 6 6.2870 3.0739 3.2999 14 7 7.3503 2.4832 3.8000 15 14 5.4901 4.4938 4.2153 16 1 4.4549 3.9674 5.1408 17 1 6.5236 5.2242 4.9924 18 1 4.8581 5.4189 3.2405 19 6 4.1130 0.5815 -1.2501 20 6 3.5655 1.2753 -2.4990 21 6 4.1126 0.5823 -3.7485 22 6 3.6793 -0.8850 -3.7489 23 6 4.2269 -1.5789 -2.5001 24 6 3.6791 -0.8857 -1.2501 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0487 3.1661 -0.8365 29 1 7.7201 2.7841 4.6447 30 1 5.2015 0.6382 -1.2502 31 1 2.4769 1.2182 -2.4986 32 1 3.8746 2.3205 -2.4990 33 1 5.2011 0.6398 -3.7487 34 1 3.7222 1.0763 -4.6383 35 1 4.0688 -1.3787 -4.6394 36 1 2.5909 -0.9425 -3.7488 37 1 5.3153 -1.5214 -2.5002 38 1 3.9178 -2.6241 -2.5001 39 1 4.0692 -1.3800 -0.3604 40 1 2.5907 -0.9428 -1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:09 Heat of formation + Delta-G solvation = -208.202166 kcal Electronic energy + Delta-G solvation = -24984.186966 eV Core-core repulsion = 21310.242826 eV Total energy + Delta-G solvation = -3673.944141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89542 -39.44930 -37.83974 -37.58853 -36.54632 -36.01951 -35.21138 -32.03078 -31.44723 -29.04608 -28.59821 -26.93732 -23.50609 -23.34762 -21.78892 -21.21824 -20.60413 -19.51943 -18.83840 -18.48687 -18.12919 -17.39491 -17.13128 -16.82987 -16.01506 -15.65589 -15.39960 -15.03729 -15.00524 -14.93280 -14.82161 -14.47619 -14.05161 -13.87347 -13.47041 -13.17586 -13.03945 -13.00733 -12.87887 -12.75325 -12.60946 -12.54062 -12.16715 -12.02048 -11.88762 -11.83985 -11.62339 -11.36254 -11.27356 -11.14343 -11.02952 -10.86581 -10.49211 -8.98770 -7.55084 0.00619 1.02810 1.11770 1.15353 1.20048 1.67402 1.87360 2.38467 2.44790 3.23565 3.49779 3.67707 3.75838 3.90425 4.07399 4.13257 4.30461 4.34420 4.35794 4.38356 4.47057 4.60375 4.63596 4.70762 4.74840 4.75907 4.86532 5.09883 5.19374 5.27287 5.32793 5.35764 5.36541 5.42350 5.46019 5.51293 5.71533 5.98519 6.06814 6.51209 6.72792 8.17803 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.005546 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.958930 B = 5047.073794 C = 5583.185932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.346 6.346 3 C 0.451 3.549 4 O -0.527 6.527 5 C 0.164 3.836 6 H 0.124 0.876 7 N -1.088 6.088 8 S 2.688 3.312 9 O -1.027 7.027 10 O -1.028 7.028 11 C -1.030 5.030 12 H 0.121 0.879 13 C 0.116 3.884 14 N -0.843 5.843 15 Si 0.815 3.185 16 H -0.241 1.241 17 H -0.216 1.216 18 H -0.236 1.236 19 C -0.082 4.082 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.127 4.127 25 H 0.064 0.936 26 H 0.140 0.860 27 H 0.050 0.950 28 H 0.422 0.578 29 H 0.293 0.707 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 -10.655 -13.697 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.261 6.261 3 C 0.292 3.708 4 O -0.415 6.415 5 C 0.054 3.946 6 H 0.142 0.858 7 N -0.847 5.847 8 S 2.789 3.211 9 O -1.017 7.017 10 O -1.017 7.017 11 C -1.163 5.163 12 H 0.139 0.861 13 C -0.102 4.102 14 N -0.473 5.473 15 Si 0.633 3.367 16 H -0.164 1.164 17 H -0.138 1.138 18 H -0.159 1.159 19 C -0.102 4.102 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.150 4.150 24 C -0.165 4.165 25 H 0.083 0.917 26 H 0.158 0.842 27 H 0.069 0.931 28 H 0.259 0.741 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.353 -9.749 -13.023 18.287 hybrid contribution 0.151 0.733 0.567 0.939 sum -8.202 -9.016 -12.456 17.427 Atomic orbital electron populations 1.23590 0.75530 1.05871 1.02193 1.86589 1.24449 1.31566 1.83511 1.24599 0.92888 0.81834 0.71440 1.90625 1.67406 1.37643 1.45846 1.20638 0.86482 0.82790 1.04670 0.85826 1.55026 1.83790 1.20452 1.25427 1.00870 0.75053 0.72863 0.72336 1.93437 1.84870 1.39352 1.84072 1.93396 1.57788 1.85713 1.64847 1.30771 1.33957 1.33774 1.17842 0.86075 1.24988 0.93281 0.96164 0.95777 1.69976 1.19006 1.38829 1.19482 0.87637 0.82646 0.82330 0.84128 1.16410 1.13782 1.15907 1.21497 1.02098 0.96170 0.90407 1.21674 1.00021 0.99487 0.94763 1.21497 1.01249 0.96064 0.96290 1.21550 1.00861 0.94899 0.98217 1.21506 1.00683 0.99444 0.93392 1.21880 1.03015 0.92103 0.99469 0.91685 0.84244 0.93146 0.74099 0.89675 0.87916 0.92836 0.92010 0.91270 0.91130 0.90738 0.92103 0.91728 0.90546 0.91118 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -9.46 7.48 -51.35 -0.38 -9.84 16 3 C 0.45 15.70 5.99 71.23 0.43 16.12 16 4 O -0.53 -21.79 16.18 21.94 0.36 -21.44 16 5 C 0.16 5.57 2.54 44.24 0.11 5.68 16 6 H 0.12 4.33 7.85 -2.38 -0.02 4.31 16 7 N -1.09 -42.66 4.92 -172.51 -0.85 -43.51 16 8 S 2.69 137.42 4.15 -56.49 -0.23 137.18 16 9 O -1.03 -56.65 16.02 -128.00 -2.05 -58.70 16 10 O -1.03 -57.16 16.59 -128.00 -2.12 -59.29 16 11 C -1.03 -56.53 10.11 67.73 0.69 -55.85 16 12 H 0.12 6.53 8.06 -2.91 -0.02 6.50 16 13 C 0.12 6.57 5.47 84.65 0.46 7.03 16 14 N -0.84 -47.50 13.96 21.45 0.30 -47.20 16 15 Si 0.81 41.26 26.54 68.60 1.82 43.08 16 16 H -0.24 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.22 -9.55 7.11 99.48 0.71 -8.84 16 18 H -0.24 -12.57 5.61 99.48 0.56 -12.01 16 19 C -0.08 -2.04 2.20 -10.79 -0.02 -2.06 16 20 C -0.12 -2.74 4.77 30.60 0.15 -2.59 16 21 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 22 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 23 C -0.11 -1.79 5.93 30.61 0.18 -1.61 16 24 C -0.13 -2.60 4.69 30.61 0.14 -2.46 16 25 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 26 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 28 H 0.42 14.36 7.03 -96.74 -0.68 13.68 16 29 H 0.29 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.05 1.27 7.22 -2.39 -0.02 1.25 16 32 H 0.06 1.44 6.51 -2.39 -0.02 1.43 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.80 5.32 -2.39 -0.01 1.79 16 Total: -1.00 -72.83 329.61 0.75 -72.08 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.22 Total: 25.07 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 3.69 Total: -37.43 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -0.55 Total: -90.71 kcal Atomic # 8 Polarization: -145.07 SS G_CDS: -4.20 Total: -149.27 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.82 Total: 43.08 kcal Atomic # 16 Polarization: 137.42 SS G_CDS: -0.23 Total: 137.18 kcal Total: -72.83 0.75 -72.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.118 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds