Wall clock time and date at job start Fri Apr 10 2020 14:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99594 * 2 1 4 4 H 1.48502 * 109.47320 * 269.99829 * 3 2 1 5 5 H 1.48501 * 109.47491 * 30.00384 * 3 2 1 6 6 H 1.48504 * 109.47021 * 150.00392 * 3 2 1 7 7 C 1.37871 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00315 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99953 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47258 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47300 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47240 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00038 * 180.02562 * 12 11 10 14 14 O 1.21580 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.47625 * 119.99890 * 180.02562 * 13 12 11 16 16 C 1.39532 * 120.51264 * 0.02562 * 15 13 12 17 17 N 1.31704 * 120.95249 * 179.97438 * 16 15 13 18 18 C 1.32310 * 121.83527 * 0.02562 * 17 16 15 19 19 C 1.39845 * 120.55233 * 0.02562 * 18 17 16 20 20 C 1.38202 * 119.59785 * 359.97058 * 19 18 17 21 21 N 1.40132 * 119.52798 * 179.97438 * 19 18 17 22 22 C 1.35142 * 118.86610 * 15.56443 * 21 19 18 23 23 O 1.21292 * 120.19816 * 181.69253 * 22 21 19 24 24 C 1.50770 * 119.60570 * 1.67661 * 22 21 19 25 25 O 1.35762 * 120.37733 * 180.02562 * 18 17 16 26 26 H 0.96994 * 120.00422 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47589 * 59.99789 * 9 7 2 28 28 H 1.09002 * 109.47383 * 299.99571 * 9 7 2 29 29 H 1.09001 * 109.46864 * 59.99695 * 10 9 7 30 30 H 1.08993 * 109.46709 * 300.00329 * 10 9 7 31 31 H 1.09001 * 109.47214 * 60.00151 * 11 10 9 32 32 H 1.09005 * 109.47320 * 300.00138 * 11 10 9 33 33 H 0.96995 * 119.99397 * 0.02562 * 12 11 10 34 34 H 1.07997 * 119.52566 * 0.25299 * 16 15 13 35 35 H 1.07996 * 120.95437 * 180.02562 * 20 19 18 36 36 H 0.96995 * 120.56826 * 195.55162 * 21 19 18 37 37 H 1.08997 * 109.42790 * 208.42862 * 24 22 21 38 38 H 1.09002 * 109.38994 * 88.55051 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5516 -2.6363 -0.0035 12 7 6.0401 -4.0175 -0.0040 13 6 7.3651 -4.2637 -0.0046 14 8 8.1551 -3.3396 -0.0052 15 6 7.8573 -5.6555 -0.0057 16 6 6.9601 -6.7242 -0.0066 17 7 7.3896 -7.9692 -0.0081 18 6 8.6799 -8.2624 -0.0082 19 6 9.6399 -7.2455 -0.0062 20 6 9.2347 -5.9242 -0.0047 21 7 11.0006 -7.5804 -0.0058 22 6 11.3619 -8.8430 -0.3249 23 8 12.5304 -9.1673 -0.3024 24 6 10.3037 -9.8460 -0.7086 25 8 9.0898 -9.5566 -0.0103 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6802 0.8887 28 1 3.8745 -0.6799 -0.8912 29 1 3.6580 -3.1496 -0.8925 30 1 3.6587 -3.1508 0.8874 31 1 5.9157 -2.1230 0.8865 32 1 5.9143 -2.1220 -0.8935 33 1 5.4097 -4.7548 -0.0039 34 1 5.8982 -6.5276 -0.0107 35 1 9.9573 -5.1216 -0.0036 36 1 11.6717 -6.9173 0.2194 37 1 10.6423 -10.8484 -0.4465 38 1 10.1268 -9.7923 -1.7829 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271496296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:28 Heat of formation + Delta-G solvation = -66.807910 kcal Electronic energy + Delta-G solvation = -23285.147002 eV Core-core repulsion = 19514.182976 eV Total energy + Delta-G solvation = -3770.964026 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29480 -40.41814 -39.35459 -38.29957 -36.26147 -35.71362 -33.50329 -32.64985 -31.63106 -30.71706 -28.81464 -27.29237 -25.29816 -24.29501 -23.11180 -21.76166 -20.77806 -20.08691 -19.71822 -18.73085 -17.97168 -17.31166 -17.26606 -16.68321 -16.33178 -15.86549 -15.61494 -15.44144 -15.23865 -14.61533 -14.51990 -14.22368 -13.94398 -13.68779 -13.63011 -13.46082 -12.74962 -12.25652 -12.04993 -12.00946 -11.98835 -11.16476 -10.95596 -10.93082 -10.68141 -10.18717 -10.07382 -10.03423 -9.85222 -9.70175 -9.27602 -9.10149 -8.76435 -8.59333 -6.09838 -4.09000 -0.06085 0.39516 1.48770 1.97550 2.20923 2.50447 2.97275 3.13854 3.28113 3.30328 3.36175 3.39338 3.76738 4.07699 4.17588 4.22878 4.34142 4.40743 4.43866 4.58383 4.96243 5.24013 5.32411 5.45291 5.51238 5.54929 5.65035 5.90908 6.01099 6.15427 6.34306 6.35337 6.55112 6.70352 7.02882 7.16461 7.21014 7.29961 7.36782 7.71623 8.01550 8.45979 8.93844 9.52117 11.03279 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.002186 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.398427 B =12808.532347 C =13421.522264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.115 4.115 11 C 0.113 3.887 12 N -0.715 5.715 13 C 0.561 3.439 14 O -0.536 6.536 15 C -0.172 4.172 16 C 0.154 3.846 17 N -0.463 5.463 18 C 0.313 3.687 19 C 0.043 3.957 20 C -0.022 4.022 21 N -0.654 5.654 22 C 0.492 3.508 23 O -0.503 6.503 24 C 0.055 3.945 25 O -0.285 6.285 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.420 0.580 37 H 0.157 0.843 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.720 -18.743 -1.311 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.049 4.049 10 C -0.153 4.153 11 C -0.009 4.009 12 N -0.366 5.366 13 C 0.346 3.654 14 O -0.413 6.413 15 C -0.179 4.179 16 C -0.005 4.005 17 N -0.180 5.180 18 C 0.130 3.870 19 C -0.056 4.056 20 C -0.051 4.051 21 N -0.303 5.303 22 C 0.279 3.721 23 O -0.376 6.376 24 C -0.024 4.024 25 O -0.194 6.194 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.194 0.806 35 H 0.178 0.822 36 H 0.261 0.739 37 H 0.175 0.825 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.047 -19.177 -1.260 28.501 hybrid contribution 0.988 1.686 0.012 1.954 sum 22.035 -17.491 -1.247 28.161 Atomic orbital electron populations 1.69905 1.06313 1.26999 1.50841 1.25033 0.94755 0.99250 0.94463 0.86779 0.80384 0.83559 0.78578 1.20253 1.21369 1.18913 1.21080 0.89256 0.94532 1.51238 0.90949 1.19502 0.97341 0.91350 0.96710 1.21732 0.90325 1.01261 1.01968 1.21757 0.96398 0.80379 1.02353 1.46090 1.06087 1.10603 1.73835 1.17777 0.82983 0.87375 0.77290 1.90807 1.55354 1.45212 1.49978 1.20926 0.93946 0.95446 1.07532 1.22870 1.00450 0.84909 0.92243 1.66908 1.13234 1.22727 1.15138 1.19341 0.88407 0.83263 0.95974 1.18702 0.84318 0.94501 1.08054 1.21186 0.95989 0.94139 0.93776 1.43709 1.05820 1.13276 1.67492 1.21541 0.90891 0.82973 0.76737 1.90853 1.18945 1.77923 1.49918 1.23398 0.79865 0.99911 0.99201 1.86182 1.40695 1.22154 1.70392 0.92661 0.96267 0.96716 0.91916 0.91877 0.91340 0.91342 0.76450 0.80611 0.82185 0.73934 0.82536 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.23 9.66 -34.44 -0.33 -14.56 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -1.95 5.27 -26.73 -0.14 -2.09 16 11 C 0.11 1.65 5.67 -4.04 -0.02 1.63 16 12 N -0.72 -8.20 5.51 -61.32 -0.34 -8.54 16 13 C 0.56 6.80 7.77 -12.43 -0.10 6.70 16 14 O -0.54 -8.40 16.42 5.30 0.09 -8.31 16 15 C -0.17 -1.60 5.89 -104.79 -0.62 -2.22 16 16 C 0.15 1.26 10.70 -17.12 -0.18 1.08 16 17 N -0.46 -4.46 10.37 -12.74 -0.13 -4.59 16 18 C 0.31 2.81 7.54 -16.74 -0.13 2.69 16 19 C 0.04 0.34 6.54 -83.47 -0.55 -0.21 16 20 C -0.02 -0.19 9.61 -38.80 -0.37 -0.56 16 21 N -0.65 -4.41 5.48 -9.63 -0.05 -4.46 16 22 C 0.49 3.64 7.95 -10.79 -0.09 3.56 16 23 O -0.50 -5.23 17.95 5.55 0.10 -5.13 16 24 C 0.05 0.27 7.16 36.04 0.26 0.53 16 25 O -0.29 -2.30 10.50 -19.00 -0.20 -2.50 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 28 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 3.42 6.52 -40.82 -0.27 3.15 16 34 H 0.18 0.98 6.40 -52.49 -0.34 0.65 16 35 H 0.16 1.19 7.74 -52.49 -0.41 0.79 16 36 H 0.42 2.19 8.89 -40.82 -0.36 1.83 16 37 H 0.16 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -35.14 331.15 -6.18 -41.32 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.26 Total: -0.85 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.48 Total: -2.03 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.25 Total: -43.98 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.01 Total: -15.95 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.14 -6.18 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271496296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.491 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds