Wall clock time and date at job start Fri Apr 10 2020 14:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99594 * 2 1 4 4 H 1.48502 * 109.47320 * 269.99829 * 3 2 1 5 5 H 1.48501 * 109.47491 * 30.00384 * 3 2 1 6 6 H 1.48504 * 109.47021 * 150.00392 * 3 2 1 7 7 C 1.37871 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00315 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99953 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47258 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47300 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47240 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00038 * 180.02562 * 12 11 10 14 14 O 1.21580 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.47625 * 119.99890 * 180.02562 * 13 12 11 16 16 C 1.39532 * 120.51264 * 0.02562 * 15 13 12 17 17 N 1.31704 * 120.95249 * 179.97438 * 16 15 13 18 18 C 1.32310 * 121.83527 * 0.02562 * 17 16 15 19 19 C 1.39845 * 120.55233 * 0.02562 * 18 17 16 20 20 C 1.38202 * 119.59785 * 359.97058 * 19 18 17 21 21 N 1.40132 * 119.52798 * 179.97438 * 19 18 17 22 22 C 1.35142 * 118.86610 * 15.56443 * 21 19 18 23 23 O 1.21292 * 120.19816 * 181.69253 * 22 21 19 24 24 C 1.50770 * 119.60570 * 1.67661 * 22 21 19 25 25 O 1.35762 * 120.37733 * 180.02562 * 18 17 16 26 26 H 0.96994 * 120.00422 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47589 * 59.99789 * 9 7 2 28 28 H 1.09002 * 109.47383 * 299.99571 * 9 7 2 29 29 H 1.09001 * 109.46864 * 59.99695 * 10 9 7 30 30 H 1.08993 * 109.46709 * 300.00329 * 10 9 7 31 31 H 1.09001 * 109.47214 * 60.00151 * 11 10 9 32 32 H 1.09005 * 109.47320 * 300.00138 * 11 10 9 33 33 H 0.96995 * 119.99397 * 0.02562 * 12 11 10 34 34 H 1.07997 * 119.52566 * 0.25299 * 16 15 13 35 35 H 1.07996 * 120.95437 * 180.02562 * 20 19 18 36 36 H 0.96995 * 120.56826 * 195.55162 * 21 19 18 37 37 H 1.08997 * 109.42790 * 208.42862 * 24 22 21 38 38 H 1.09002 * 109.38994 * 88.55051 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5516 -2.6363 -0.0035 12 7 6.0401 -4.0175 -0.0040 13 6 7.3651 -4.2637 -0.0046 14 8 8.1551 -3.3396 -0.0052 15 6 7.8573 -5.6555 -0.0057 16 6 6.9601 -6.7242 -0.0066 17 7 7.3896 -7.9692 -0.0081 18 6 8.6799 -8.2624 -0.0082 19 6 9.6399 -7.2455 -0.0062 20 6 9.2347 -5.9242 -0.0047 21 7 11.0006 -7.5804 -0.0058 22 6 11.3619 -8.8430 -0.3249 23 8 12.5304 -9.1673 -0.3024 24 6 10.3037 -9.8460 -0.7086 25 8 9.0898 -9.5566 -0.0103 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6802 0.8887 28 1 3.8745 -0.6799 -0.8912 29 1 3.6580 -3.1496 -0.8925 30 1 3.6587 -3.1508 0.8874 31 1 5.9157 -2.1230 0.8865 32 1 5.9143 -2.1220 -0.8935 33 1 5.4097 -4.7548 -0.0039 34 1 5.8982 -6.5276 -0.0107 35 1 9.9573 -5.1216 -0.0036 36 1 11.6717 -6.9173 0.2194 37 1 10.6423 -10.8484 -0.4465 38 1 10.1268 -9.7923 -1.7829 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271496296.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:27 Heat of formation + Delta-G solvation = -96.235398 kcal Electronic energy + Delta-G solvation = -23286.423073 eV Core-core repulsion = 19514.182976 eV Total energy + Delta-G solvation = -3772.240098 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.90725 -41.21208 -40.14557 -38.96732 -37.05601 -36.82805 -35.17508 -33.64023 -33.03345 -31.45849 -29.54025 -28.65293 -26.16054 -24.99079 -24.46284 -22.64611 -22.17510 -20.98707 -20.33990 -19.49777 -18.95335 -18.53416 -17.96403 -17.82400 -17.09553 -16.76140 -16.57490 -16.30906 -16.08371 -15.82809 -15.54784 -15.29564 -14.82493 -14.75832 -14.61888 -14.27981 -14.07161 -13.77419 -13.61110 -12.74272 -12.69780 -12.65921 -12.57942 -11.96344 -11.77660 -11.56372 -11.54007 -11.38079 -11.27851 -10.77039 -10.73083 -10.71837 -10.13552 -9.39547 -8.26163 -6.29697 -0.74200 -0.24531 0.91596 1.39325 1.41253 1.42538 1.52400 1.63043 1.69615 2.06607 2.38932 2.50922 2.64399 3.09891 3.15276 3.48182 3.49881 3.64524 3.84032 3.92513 4.12405 4.20673 4.26705 4.33589 4.55390 4.71801 4.89179 4.94280 4.95284 5.08817 5.10977 5.35017 5.46710 5.54484 5.61396 5.68951 5.75732 6.31080 6.43871 6.48259 6.59818 6.79229 7.09982 7.35130 8.90092 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.002186 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.398427 B =12808.532347 C =13421.522264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.528 4.528 8 H 0.039 0.961 9 C -0.014 4.014 10 C -0.103 4.103 11 C 0.126 3.874 12 N -0.706 5.706 13 C 0.566 3.434 14 O -0.574 6.574 15 C -0.181 4.181 16 C 0.165 3.835 17 N -0.482 5.482 18 C 0.310 3.690 19 C 0.047 3.953 20 C -0.018 4.018 21 N -0.650 5.650 22 C 0.493 3.507 23 O -0.536 6.536 24 C 0.055 3.945 25 O -0.295 6.295 26 H 0.265 0.735 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.415 0.585 34 H 0.201 0.799 35 H 0.166 0.834 36 H 0.426 0.574 37 H 0.182 0.818 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.285 -19.376 -1.542 29.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.169 1.169 7 C -0.566 4.566 8 H 0.057 0.943 9 C -0.052 4.052 10 C -0.141 4.141 11 C 0.003 3.997 12 N -0.358 5.358 13 C 0.353 3.647 14 O -0.455 6.455 15 C -0.187 4.187 16 C 0.006 3.994 17 N -0.200 5.200 18 C 0.128 3.872 19 C -0.052 4.052 20 C -0.046 4.046 21 N -0.299 5.299 22 C 0.281 3.719 23 O -0.413 6.413 24 C -0.023 4.023 25 O -0.204 6.204 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.254 0.746 34 H 0.217 0.783 35 H 0.184 0.816 36 H 0.267 0.733 37 H 0.199 0.801 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 22.611 -19.848 -1.491 30.124 hybrid contribution 0.476 1.757 0.084 1.822 sum 23.087 -18.091 -1.407 29.365 Atomic orbital electron populations 1.70060 1.08240 1.28036 1.52875 1.25998 0.95581 1.03471 0.94412 0.85708 0.79580 0.78563 0.79104 1.19344 1.21378 1.16901 1.21490 0.92033 0.93200 1.49895 0.94287 1.19480 0.93930 0.94892 0.96878 1.21506 0.91986 0.98052 1.02535 1.21384 0.94396 0.81985 1.01949 1.45866 1.06455 1.09938 1.73543 1.18043 0.82537 0.88035 0.76117 1.90790 1.56240 1.46606 1.51855 1.20662 0.94512 0.94011 1.09542 1.23190 1.01357 0.84176 0.90652 1.66980 1.13696 1.23165 1.16165 1.19544 0.88539 0.83854 0.95284 1.18562 0.84514 0.94033 1.08060 1.21266 0.95876 0.94510 0.92943 1.43709 1.05603 1.13518 1.67030 1.21958 0.90894 0.83230 0.75836 1.90844 1.20404 1.78456 1.51553 1.23717 0.77987 1.00170 1.00382 1.86180 1.41723 1.21669 1.70830 0.92628 0.96043 0.96137 0.91363 0.91421 0.91907 0.91778 0.74632 0.78286 0.81613 0.73263 0.80054 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.00 0.12 5.47 84.65 0.46 0.58 16 3 Si 0.95 43.22 27.47 68.60 1.88 45.10 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.36 6.54 99.48 0.65 -9.71 16 7 C -0.53 -28.90 9.66 25.60 0.25 -28.65 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.32 5.27 30.59 0.16 -3.16 16 11 C 0.13 3.44 5.67 86.38 0.49 3.93 16 12 N -0.71 -14.72 5.51 -466.18 -2.57 -17.29 16 13 C 0.57 12.79 7.77 86.72 0.67 13.47 16 14 O -0.57 -17.40 16.42 -3.97 -0.07 -17.47 16 15 C -0.18 -3.05 5.89 -19.98 -0.12 -3.17 16 16 C 0.16 2.34 10.70 85.02 0.91 3.25 16 17 N -0.48 -8.34 10.37 -307.01 -3.18 -11.52 16 18 C 0.31 5.00 7.54 85.01 0.64 5.64 16 19 C 0.05 0.66 6.54 38.19 0.25 0.91 16 20 C -0.02 -0.27 9.61 22.77 0.22 -0.05 16 21 N -0.65 -7.87 5.48 -302.56 -1.66 -9.52 16 22 C 0.49 6.56 7.95 87.62 0.70 7.26 16 23 O -0.54 -10.66 17.95 -3.07 -0.06 -10.71 16 24 C 0.05 0.42 7.16 71.26 0.51 0.93 16 25 O -0.29 -4.15 10.50 -90.89 -0.95 -5.11 16 26 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 27 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 28 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.42 6.02 6.52 -92.71 -0.60 5.42 16 34 H 0.20 1.67 6.40 -2.91 -0.02 1.65 16 35 H 0.17 2.27 7.74 -2.91 -0.02 2.25 16 36 H 0.43 4.00 8.89 -92.71 -0.82 3.17 16 37 H 0.18 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -76.31 331.15 -1.39 -77.70 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.35 Total: 6.50 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.26 Total: 0.47 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -7.11 Total: -96.49 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.07 Total: -33.29 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.10 kcal Total: -76.31 -1.39 -77.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271496296.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.539 kcal (2) G-P(sol) polarization free energy of solvation -76.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds