Wall clock time and date at job start Fri Apr 10 2020 14:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47610 * 17.81996 * 3 2 1 5 5 N 1.46499 * 109.47324 * 179.97438 * 4 3 2 6 6 C 1.46507 * 120.00232 * 270.00102 * 5 4 3 7 7 C 1.50703 * 109.47140 * 270.00069 * 6 5 4 8 8 H 1.08000 * 119.99950 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99928 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99796 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47500 * 90.00094 * 11 9 7 13 13 H 1.48505 * 109.46789 * 210.00241 * 11 9 7 14 14 H 1.48503 * 109.47297 * 329.99869 * 11 9 7 15 15 C 1.34775 * 119.99933 * 90.00085 * 5 4 3 16 16 O 1.21279 * 120.00063 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00105 * 0.02562 * 15 5 4 18 18 N 1.46493 * 109.47225 * 179.97438 * 17 15 5 19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 15 20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47401 * 257.81769 * 3 2 1 27 27 H 1.09004 * 109.47361 * 137.82385 * 3 2 1 28 28 H 1.09008 * 109.46857 * 60.00085 * 4 3 2 29 29 H 1.08997 * 109.47368 * 300.00256 * 4 3 2 30 30 H 1.08998 * 109.46434 * 30.00235 * 6 5 4 31 31 H 1.08995 * 109.46869 * 150.00062 * 6 5 4 32 32 H 0.96996 * 119.99909 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.47342 * 59.99110 * 17 15 5 34 34 H 1.09001 * 109.46775 * 299.99724 * 17 15 5 35 35 H 0.96998 * 120.00266 * 359.97438 * 18 17 15 36 36 H 1.08005 * 126.64485 * 0.02562 * 22 21 19 37 37 H 1.08003 * 126.44294 * 180.02562 * 23 22 21 38 38 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3723 -0.4414 5 7 4.5837 -1.3714 -0.4420 6 6 5.3156 -0.9828 -1.6502 7 6 5.5672 -2.2023 -2.4991 8 1 5.2173 -3.1701 -2.1713 9 6 6.2440 -2.0826 -3.6944 10 7 6.6705 -0.9041 -4.0933 11 14 6.5552 -3.5940 -4.7469 12 1 5.4247 -3.7809 -5.6914 13 1 7.8150 -3.4133 -5.5123 14 1 6.6737 -4.7894 -3.8739 15 6 5.2582 -1.7280 0.6690 16 8 6.4710 -1.7277 0.6684 17 6 4.5054 -2.1283 1.9117 18 7 5.4580 -2.4688 2.9712 19 6 5.0094 -2.8578 4.1812 20 8 3.8131 -2.9258 4.3936 21 6 5.9630 -3.1992 5.2418 22 6 5.6454 -3.6053 6.5062 23 6 6.8589 -3.8212 7.1775 24 6 7.8517 -3.5415 6.3044 25 8 7.3078 -3.1669 5.1392 26 1 2.9713 0.2177 1.0045 27 1 2.9710 0.7624 -0.6900 28 1 2.7555 -1.5893 -1.4460 29 1 2.7557 -2.1341 0.2485 30 1 4.7258 -0.2616 -2.2159 31 1 6.2677 -0.5330 -1.3692 32 1 7.1463 -0.8198 -4.9343 33 1 3.8795 -2.9937 1.6944 34 1 3.8781 -1.2993 2.2392 35 1 6.4116 -2.4143 2.8021 36 1 4.6526 -3.7352 6.9112 37 1 6.9771 -4.1499 8.1995 38 1 8.9094 -3.6125 6.5109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343774383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:00 Heat of formation + Delta-G solvation = -24.570312 kcal Electronic energy + Delta-G solvation = -23871.731170 eV Core-core repulsion = 20102.598704 eV Total energy + Delta-G solvation = -3769.132466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.87684 -40.00254 -38.93321 -36.91824 -35.48486 -34.57500 -33.25810 -32.93128 -30.93701 -30.52659 -28.61514 -26.62202 -24.13011 -23.57034 -22.43297 -21.92424 -20.47448 -19.34950 -18.40079 -17.63922 -16.80749 -16.63133 -16.56223 -16.35780 -15.82965 -15.48443 -15.23069 -14.75581 -14.45116 -14.31739 -13.84102 -13.62702 -13.29277 -13.21965 -13.00396 -12.88914 -12.68250 -12.47652 -12.28175 -12.08697 -11.77535 -11.35910 -11.04597 -10.93976 -10.69689 -10.49980 -10.30156 -10.26595 -9.80215 -9.35395 -9.30777 -8.88269 -8.53629 -8.01705 -6.15556 -4.20621 0.86444 2.12142 2.46148 2.70754 2.82183 2.96695 3.01450 3.08703 3.24969 3.32413 3.36205 3.59775 4.12070 4.36196 4.48369 4.65820 4.74940 4.81336 4.98397 5.06569 5.20081 5.24527 5.34662 5.41130 5.49316 5.52124 5.66259 5.76061 5.99647 6.06632 6.12541 6.59153 6.79044 7.21179 7.29447 7.37919 7.57975 7.79631 7.90939 8.07150 8.09227 8.61357 8.84683 9.45283 10.92620 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.003780 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.686178 B = 7405.282022 C = 9376.638806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.050 4.050 4 C 0.112 3.888 5 N -0.589 5.589 6 C 0.245 3.755 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.502 3.498 16 O -0.529 6.529 17 C 0.094 3.906 18 N -0.702 5.702 19 C 0.604 3.396 20 O -0.525 6.525 21 C -0.075 4.075 22 C -0.122 4.122 23 C -0.229 4.229 24 C -0.005 4.005 25 O -0.160 6.160 26 H 0.107 0.893 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.418 0.582 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -2.014 17.957 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.014 4.014 5 N -0.320 5.320 6 C 0.126 3.874 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.288 3.712 16 O -0.406 6.406 17 C -0.033 4.033 18 N -0.356 5.356 19 C 0.390 3.610 20 O -0.404 6.404 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.248 4.248 24 C -0.075 4.075 25 O -0.054 6.054 26 H 0.125 0.875 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.257 0.743 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.961 -1.853 17.593 17.799 hybrid contribution 1.063 -0.841 -0.554 1.464 sum -0.898 -2.694 17.040 17.275 Atomic orbital electron populations 1.81213 1.13027 1.08545 1.09171 1.29025 0.95041 0.93214 0.92909 1.19869 0.81551 1.02214 1.05531 1.21409 0.81732 0.93938 1.04318 1.48165 1.05147 1.65268 1.13425 1.19424 0.92671 0.96081 0.79208 1.21397 1.37045 0.94296 1.04320 0.92272 1.24913 0.95189 0.96194 0.97615 1.69915 1.38155 1.22712 1.22329 0.86498 0.77749 0.82993 0.80208 1.20593 1.21079 1.19869 1.20150 0.88169 0.78545 0.84346 1.90699 1.13522 1.52969 1.83364 1.21337 0.92204 1.02848 0.86932 1.45635 1.12062 1.67111 1.10777 1.16485 0.86391 0.77460 0.80695 1.90884 1.14072 1.54319 1.81103 1.22031 0.80868 1.12256 0.97531 1.21968 1.00411 0.99789 0.92096 1.21864 0.91889 1.08994 1.02016 1.24457 0.99846 1.00322 0.82861 1.84122 1.19371 1.66511 1.35436 0.87531 0.86344 0.88280 0.90291 0.94376 0.93374 0.92585 0.88242 0.88437 0.74278 0.82194 0.82605 0.77306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.57 18.54 42.15 0.78 -5.78 16 2 C 0.22 2.60 15.43 -20.76 -0.32 2.28 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.11 1.41 5.17 -4.04 -0.02 1.39 16 5 N -0.59 -10.09 2.46 -175.06 -0.43 -10.52 16 6 C 0.24 5.51 5.16 -5.19 -0.03 5.48 16 7 C -0.53 -13.71 9.39 -34.44 -0.32 -14.04 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 11 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.50 8.62 7.74 -10.99 -0.09 8.53 16 16 O -0.53 -11.22 15.25 5.56 0.08 -11.14 16 17 C 0.09 1.25 4.71 -5.20 -0.02 1.22 16 18 N -0.70 -9.66 5.52 -62.81 -0.35 -10.01 16 19 C 0.60 8.40 7.79 -12.86 -0.10 8.30 16 20 O -0.53 -8.35 16.86 5.19 0.09 -8.26 16 21 C -0.07 -0.92 7.13 -36.79 -0.26 -1.18 16 22 C -0.12 -1.28 10.62 -39.39 -0.42 -1.70 16 23 C -0.23 -1.85 10.87 -39.89 -0.43 -2.28 16 24 C 0.00 -0.04 12.08 29.63 0.36 0.32 16 25 O -0.16 -1.80 10.40 5.00 0.05 -1.74 16 26 H 0.11 0.87 7.22 -51.93 -0.38 0.49 16 27 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.10 1.32 8.07 -51.92 -0.42 0.90 16 29 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 30 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.10 1.24 7.40 -51.93 -0.38 0.85 16 34 H 0.10 1.08 7.19 -51.93 -0.37 0.71 16 35 H 0.42 5.94 7.19 -40.82 -0.29 5.64 16 36 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.21 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -33.65 348.19 -4.96 -38.61 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.22 Total: 2.67 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -1.93 Total: 9.25 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.74 Total: -50.39 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.22 Total: -21.14 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.65 -4.96 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343774383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.041 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds