Wall clock time and date at job start Fri Apr 10 2020 14:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47610 * 17.81996 * 3 2 1 5 5 N 1.46499 * 109.47324 * 179.97438 * 4 3 2 6 6 C 1.46507 * 120.00232 * 270.00102 * 5 4 3 7 7 C 1.50703 * 109.47140 * 270.00069 * 6 5 4 8 8 H 1.08000 * 119.99950 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99928 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99796 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99893 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47500 * 90.00094 * 11 9 7 13 13 H 1.48505 * 109.46789 * 210.00241 * 11 9 7 14 14 H 1.48503 * 109.47297 * 329.99869 * 11 9 7 15 15 C 1.34775 * 119.99933 * 90.00085 * 5 4 3 16 16 O 1.21279 * 120.00063 * 179.97438 * 15 5 4 17 17 C 1.50700 * 120.00105 * 0.02562 * 15 5 4 18 18 N 1.46493 * 109.47225 * 179.97438 * 17 15 5 19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 15 20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17 22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47401 * 257.81769 * 3 2 1 27 27 H 1.09004 * 109.47361 * 137.82385 * 3 2 1 28 28 H 1.09008 * 109.46857 * 60.00085 * 4 3 2 29 29 H 1.08997 * 109.47368 * 300.00256 * 4 3 2 30 30 H 1.08998 * 109.46434 * 30.00235 * 6 5 4 31 31 H 1.08995 * 109.46869 * 150.00062 * 6 5 4 32 32 H 0.96996 * 119.99909 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.47342 * 59.99110 * 17 15 5 34 34 H 1.09001 * 109.46775 * 299.99724 * 17 15 5 35 35 H 0.96998 * 120.00266 * 359.97438 * 18 17 15 36 36 H 1.08005 * 126.64485 * 0.02562 * 22 21 19 37 37 H 1.08003 * 126.44294 * 180.02562 * 23 22 21 38 38 H 1.07997 * 125.61851 * 180.26772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3723 -0.4414 5 7 4.5837 -1.3714 -0.4420 6 6 5.3156 -0.9828 -1.6502 7 6 5.5672 -2.2023 -2.4991 8 1 5.2173 -3.1701 -2.1713 9 6 6.2440 -2.0826 -3.6944 10 7 6.6705 -0.9041 -4.0933 11 14 6.5552 -3.5940 -4.7469 12 1 5.4247 -3.7809 -5.6914 13 1 7.8150 -3.4133 -5.5123 14 1 6.6737 -4.7894 -3.8739 15 6 5.2582 -1.7280 0.6690 16 8 6.4710 -1.7277 0.6684 17 6 4.5054 -2.1283 1.9117 18 7 5.4580 -2.4688 2.9712 19 6 5.0094 -2.8578 4.1812 20 8 3.8131 -2.9258 4.3936 21 6 5.9630 -3.1992 5.2418 22 6 5.6454 -3.6053 6.5062 23 6 6.8589 -3.8212 7.1775 24 6 7.8517 -3.5415 6.3044 25 8 7.3078 -3.1669 5.1392 26 1 2.9713 0.2177 1.0045 27 1 2.9710 0.7624 -0.6900 28 1 2.7555 -1.5893 -1.4460 29 1 2.7557 -2.1341 0.2485 30 1 4.7258 -0.2616 -2.2159 31 1 6.2677 -0.5330 -1.3692 32 1 7.1463 -0.8198 -4.9343 33 1 3.8795 -2.9937 1.6944 34 1 3.8781 -1.2993 2.2392 35 1 6.4116 -2.4143 2.8021 36 1 4.6526 -3.7352 6.9112 37 1 6.9771 -4.1499 8.1995 38 1 8.9094 -3.6125 6.5109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343774383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:00 Heat of formation + Delta-G solvation = -48.126937 kcal Electronic energy + Delta-G solvation = -23872.752662 eV Core-core repulsion = 20102.598704 eV Total energy + Delta-G solvation = -3770.153958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.62262 -41.24533 -40.13556 -38.03641 -36.81826 -35.71033 -34.82844 -33.99841 -32.19987 -31.42176 -29.95369 -28.10243 -25.34962 -24.91414 -23.66765 -22.66095 -21.41225 -20.47128 -19.51932 -18.79831 -18.34219 -17.91419 -17.51478 -17.41982 -16.94102 -16.66976 -16.59974 -16.02732 -15.70128 -15.52013 -15.09067 -14.71397 -14.39548 -14.15650 -14.07009 -13.89508 -13.60204 -13.58039 -13.55803 -13.51683 -13.17020 -12.93797 -12.72248 -12.51192 -12.18074 -11.89239 -11.67543 -11.57953 -11.02242 -10.78110 -10.57335 -10.40147 -9.64534 -9.55297 -8.17837 -6.29445 0.03140 1.41235 1.43336 1.44700 1.51779 1.57325 1.61145 1.79942 1.85563 2.03781 2.07960 2.37149 2.47015 3.06863 3.15277 3.57003 3.73737 3.98934 4.02966 4.09532 4.13924 4.26519 4.34305 4.59294 4.64802 4.82667 4.92569 4.96494 4.98996 5.05526 5.16531 5.34271 5.42765 5.57477 5.82900 5.86747 6.12224 6.33466 6.58262 6.63469 6.80013 6.90197 7.23688 7.42697 8.89007 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.003780 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.686178 B = 7405.282022 C = 9376.638806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.245 3.755 3 C -0.039 4.039 4 C 0.108 3.892 5 N -0.588 5.588 6 C 0.259 3.741 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.956 3.044 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.502 3.498 16 O -0.576 6.576 17 C 0.103 3.897 18 N -0.706 5.706 19 C 0.606 3.394 20 O -0.552 6.552 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.233 4.233 24 C 0.007 3.993 25 O -0.177 6.177 26 H 0.135 0.865 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.040 0.960 31 H 0.010 0.990 32 H 0.265 0.735 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.415 0.585 36 H 0.165 0.835 37 H 0.187 0.813 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -2.892 19.602 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.080 4.080 4 C -0.017 4.017 5 N -0.318 5.318 6 C 0.139 3.861 7 C -0.580 4.580 8 H 0.073 0.927 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.782 3.218 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.290 3.710 16 O -0.456 6.456 17 C -0.023 4.023 18 N -0.358 5.358 19 C 0.394 3.606 20 O -0.433 6.433 21 C -0.165 4.165 22 C -0.139 4.139 23 C -0.251 4.251 24 C -0.062 4.062 25 O -0.073 6.073 26 H 0.153 0.847 27 H 0.144 0.856 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.254 0.746 36 H 0.183 0.817 37 H 0.204 0.796 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.037 -2.734 19.250 19.549 hybrid contribution 1.156 -0.587 -0.969 1.619 sum -0.881 -3.321 18.281 18.601 Atomic orbital electron populations 1.81254 1.14502 1.10036 1.10973 1.29149 0.94983 0.91764 0.91330 1.19842 0.80087 1.00728 1.07311 1.21620 0.78745 0.96333 1.04957 1.47990 1.06899 1.64994 1.11931 1.18891 0.91719 0.94787 0.80733 1.21749 1.36480 0.95093 1.04705 0.92744 1.25680 0.95239 0.98661 0.99027 1.70014 1.39116 1.24431 1.22833 0.85581 0.77793 0.79714 0.78710 1.19420 1.21063 1.19930 1.20764 0.87746 0.77338 0.85198 1.90677 1.15810 1.54830 1.84274 1.21351 0.91717 1.04359 0.84872 1.45678 1.11919 1.67269 1.10975 1.16649 0.86451 0.76754 0.80771 1.90853 1.15079 1.55717 1.81606 1.21823 0.81375 1.15468 0.97859 1.22275 1.01695 0.98297 0.91673 1.22241 0.90693 1.08822 1.03368 1.25407 1.01672 0.97643 0.81495 1.84112 1.18959 1.67132 1.37083 0.84727 0.85632 0.89066 0.87617 0.94247 0.97200 0.92562 0.86846 0.85554 0.74645 0.81733 0.79621 0.73263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.95 18.54 20.00 0.37 -13.58 16 2 C 0.25 5.42 15.43 89.44 1.38 6.80 16 3 C -0.04 -0.68 6.03 28.79 0.17 -0.51 16 4 C 0.11 2.51 5.17 86.38 0.45 2.96 16 5 N -0.59 -19.81 2.46 -826.15 -2.03 -21.84 16 6 C 0.26 11.88 5.16 85.63 0.44 12.33 16 7 C -0.54 -28.20 9.39 25.60 0.24 -27.96 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.01 0.72 5.46 84.65 0.46 1.18 16 10 N -0.92 -52.16 13.29 21.45 0.28 -51.87 16 11 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 C 0.50 17.01 7.74 87.66 0.68 17.69 16 16 O -0.58 -25.00 15.25 -3.03 -0.05 -25.04 16 17 C 0.10 2.59 4.71 85.63 0.40 2.99 16 18 N -0.71 -19.06 5.52 -470.85 -2.60 -21.66 16 19 C 0.61 16.58 7.79 86.44 0.67 17.25 16 20 O -0.55 -17.12 16.86 -4.33 -0.07 -17.19 16 21 C -0.11 -2.72 7.13 24.08 0.17 -2.55 16 22 C -0.12 -2.32 10.62 22.39 0.24 -2.08 16 23 C -0.23 -3.12 10.87 22.07 0.24 -2.88 16 24 C 0.01 0.09 12.08 67.10 0.81 0.91 16 25 O -0.18 -3.79 10.40 -5.01 -0.05 -3.85 16 26 H 0.13 1.71 7.22 -2.39 -0.02 1.69 16 27 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.09 2.31 8.07 -2.38 -0.02 2.29 16 29 H 0.11 1.93 6.44 -2.39 -0.02 1.92 16 30 H 0.04 1.78 8.07 -2.39 -0.02 1.77 16 31 H 0.01 0.53 7.42 -2.39 -0.02 0.51 16 32 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.11 2.57 7.40 -2.39 -0.02 2.56 16 34 H 0.13 2.44 7.19 -2.39 -0.02 2.43 16 35 H 0.42 11.92 7.19 -92.71 -0.67 11.25 16 36 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.25 0.85 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -75.21 348.19 4.69 -70.52 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.45 Total: 13.68 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 6.36 Total: 26.12 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -3.97 Total: -108.96 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.17 Total: -46.08 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -75.21 4.69 -70.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343774383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.392 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds