Wall clock time and date at job start Fri Apr 10 2020 14:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99985 * 2 1 4 4 H 1.48504 * 109.46687 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47393 * 300.00347 * 3 2 1 6 6 H 1.48498 * 109.46796 * 60.00350 * 3 2 1 7 7 C 1.38945 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99726 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00540 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00684 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99729 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00462 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47504 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00263 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99839 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46744 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46744 * 179.97438 * 17 16 14 19 19 O 1.21207 * 120.00219 * 0.02562 * 18 17 16 20 20 C 1.47554 * 119.99752 * 179.97438 * 18 17 16 21 21 C 1.39544 * 119.74310 * 179.97438 * 20 18 17 22 22 C 1.38563 * 119.04141 * 180.02562 * 21 20 18 23 23 C 1.38631 * 118.50292 * 0.02562 * 22 21 20 24 24 C 1.38664 * 119.38551 * 0.27355 * 23 22 21 25 25 N 1.31446 * 120.92568 * 359.42493 * 24 23 22 26 26 H 0.97002 * 119.99308 * 359.97438 * 1 2 3 27 27 H 0.97006 * 119.99949 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47594 * 59.99283 * 12 10 9 29 29 H 1.09008 * 109.46878 * 299.99451 * 12 10 9 30 30 H 0.96999 * 119.99388 * 359.97438 * 13 12 10 31 31 H 1.08998 * 109.47553 * 59.99920 * 16 14 13 32 32 H 1.09000 * 109.46954 * 299.99105 * 16 14 13 33 33 H 1.08998 * 109.46974 * 59.99795 * 17 16 14 34 34 H 1.08995 * 109.47509 * 299.99608 * 17 16 14 35 35 H 1.08000 * 120.47926 * 0.05278 * 21 20 18 36 36 H 1.08007 * 120.74949 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.30420 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.52925 * 179.72223 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1956 -5.9765 -0.0016 14 6 1.7463 -7.2472 -0.0017 15 8 0.5539 -7.4687 -0.0008 16 6 2.7256 -8.3926 -0.0028 17 6 1.9605 -9.7176 -0.0019 18 6 2.9398 -10.8631 -0.0037 19 8 4.1315 -10.6416 -0.0049 20 6 2.4479 -12.2542 -0.0027 21 6 3.3594 -13.3108 -0.0049 22 6 2.8815 -14.6114 -0.0044 23 6 1.5098 -14.8122 -0.0024 24 6 0.6616 -13.7153 -0.0067 25 7 1.1403 -12.4911 -0.0013 26 1 -0.4849 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0005 28 1 0.6172 -4.9205 -0.8913 29 1 0.6167 -4.9209 0.8887 30 1 3.1492 -5.7992 -0.0019 31 1 3.3530 -8.3352 0.8867 32 1 3.3515 -8.3347 -0.8933 33 1 1.3328 -9.7753 -0.8912 34 1 1.3349 -9.7754 0.8887 35 1 4.4219 -13.1176 -0.0064 36 1 3.5623 -15.4499 -0.0065 37 1 1.1056 -15.8137 -0.0025 38 1 -0.4074 -13.8690 -0.0097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344182372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:43 Heat of formation + Delta-G solvation = -80.475507 kcal Electronic energy + Delta-G solvation = -22723.730911 eV Core-core repulsion = 18952.174214 eV Total energy + Delta-G solvation = -3771.556697 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94232 -39.70432 -39.00431 -38.07029 -34.45150 -33.64944 -33.45020 -32.66424 -31.89478 -31.36477 -28.24609 -26.36065 -24.65453 -24.05301 -23.41085 -20.53538 -19.91619 -19.49081 -18.14681 -17.89247 -17.15924 -16.62032 -16.22862 -16.16987 -15.57167 -15.40531 -15.20525 -14.88066 -14.59872 -14.37100 -14.26809 -13.87141 -13.73918 -13.67082 -13.04571 -12.83746 -12.52431 -12.18958 -11.93433 -11.87627 -11.62330 -11.23284 -11.13087 -10.53954 -10.46062 -10.40049 -10.31712 -9.79311 -9.68403 -9.68247 -9.63986 -8.76886 -8.62116 -8.09270 -6.50794 -3.92708 0.04714 0.73766 1.90669 2.85495 3.11132 3.17187 3.23520 3.30384 3.37899 3.57458 3.75106 4.00521 4.13244 4.32124 4.48791 4.53372 4.60168 4.77975 4.89429 5.03678 5.06485 5.17904 5.19036 5.21750 5.50610 5.57179 5.63432 5.76605 5.92142 5.93924 5.98450 6.08480 6.08820 6.70839 6.97235 7.43884 7.47121 7.83219 7.93285 8.44564 8.48755 9.05603 9.40279 9.88223 10.66184 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.052149 B = 0.001915 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.799216 B =14617.520204 C =15128.570521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.708 5.708 14 C 0.512 3.488 15 O -0.550 6.550 16 C -0.134 4.134 17 C -0.134 4.134 18 C 0.413 3.587 19 O -0.443 6.443 20 C 0.046 3.954 21 C -0.116 4.116 22 C -0.087 4.087 23 C -0.147 4.147 24 C 0.096 3.904 25 N -0.439 5.439 26 H 0.274 0.726 27 H 0.396 0.604 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.412 0.588 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -28.268 -0.018 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.362 5.362 14 C 0.298 3.702 15 O -0.429 6.429 16 C -0.174 4.174 17 C -0.172 4.172 18 C 0.289 3.711 19 O -0.315 6.315 20 C -0.089 4.089 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.167 4.167 24 C -0.064 4.064 25 N -0.151 5.151 26 H 0.083 0.917 27 H 0.230 0.770 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.250 0.750 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.630 -27.342 -0.015 27.391 hybrid contribution 0.627 0.106 0.000 0.636 sum 2.257 -27.236 -0.015 27.329 Atomic orbital electron populations 1.69628 1.06010 1.28400 1.49458 1.25331 0.95677 0.99947 0.96828 0.85751 0.79682 0.80803 0.77809 1.19134 1.20624 1.20620 1.19786 0.93504 0.82006 1.48096 0.87615 1.41808 1.09488 1.04493 1.62674 1.19771 0.88308 0.85034 0.85529 1.90501 1.13722 1.86841 1.57293 1.20952 0.91936 0.85824 1.03229 1.45736 1.11661 1.04704 1.74060 1.20502 0.89593 0.83875 0.76270 1.90694 1.16818 1.84953 1.50424 1.21476 0.98155 0.92065 1.05706 1.21592 0.98020 0.90581 1.06992 1.22477 0.89456 0.88582 0.70585 1.90546 1.18614 1.86682 1.35635 1.21787 0.89920 0.95972 1.01268 1.22345 1.01929 0.92710 0.96638 1.21659 0.95924 0.97161 0.96514 1.22493 0.94371 1.01156 0.98649 1.22938 1.00968 0.87081 0.95449 1.67699 1.14115 1.24611 1.08671 0.91655 0.77034 0.89848 0.89843 0.75021 0.88251 0.88246 0.86965 0.86957 0.83583 0.84089 0.84124 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.74 5.29 -10.97 -0.06 -13.80 16 10 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 11 O -0.60 -15.42 15.24 5.54 0.08 -15.34 16 12 C 0.11 2.01 6.15 -5.20 -0.03 1.98 16 13 N -0.71 -11.81 5.53 -61.47 -0.34 -12.15 16 14 C 0.51 7.90 7.83 -10.99 -0.09 7.81 16 15 O -0.55 -10.01 15.98 5.56 0.09 -9.92 16 16 C -0.13 -1.58 4.99 -27.88 -0.14 -1.72 16 17 C -0.13 -1.48 4.47 -27.88 -0.12 -1.61 16 18 C 0.41 4.47 7.13 -30.51 -0.22 4.25 16 19 O -0.44 -5.50 15.95 5.62 0.09 -5.41 16 20 C 0.05 0.45 6.73 -83.13 -0.56 -0.11 16 21 C -0.12 -0.91 9.64 -38.97 -0.38 -1.28 16 22 C -0.09 -0.47 10.17 -39.32 -0.40 -0.87 16 23 C -0.15 -0.72 10.12 -39.28 -0.40 -1.12 16 24 C 0.10 0.64 11.18 -17.56 -0.20 0.44 16 25 N -0.44 -4.23 9.79 -9.88 -0.10 -4.32 16 26 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 30 H 0.41 6.78 7.44 -40.82 -0.30 6.47 16 31 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.11 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.11 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.15 1.04 7.64 -52.49 -0.40 0.63 16 36 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 37 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 38 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -33.47 344.43 -6.53 -39.99 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.33 Total: 13.74 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -2.85 Total: 9.67 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.23 Total: -53.55 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: 0.26 Total: -30.67 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.47 -6.53 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344182372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.481 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds