Wall clock time and date at job start Fri Apr 10 2020 14:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99985 * 2 1 4 4 H 1.48504 * 109.46687 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47393 * 300.00347 * 3 2 1 6 6 H 1.48498 * 109.46796 * 60.00350 * 3 2 1 7 7 C 1.38945 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99726 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00540 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00684 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99729 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00462 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47504 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00263 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99839 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46744 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46744 * 179.97438 * 17 16 14 19 19 O 1.21207 * 120.00219 * 0.02562 * 18 17 16 20 20 C 1.47554 * 119.99752 * 179.97438 * 18 17 16 21 21 C 1.39544 * 119.74310 * 179.97438 * 20 18 17 22 22 C 1.38563 * 119.04141 * 180.02562 * 21 20 18 23 23 C 1.38631 * 118.50292 * 0.02562 * 22 21 20 24 24 C 1.38664 * 119.38551 * 0.27355 * 23 22 21 25 25 N 1.31446 * 120.92568 * 359.42493 * 24 23 22 26 26 H 0.97002 * 119.99308 * 359.97438 * 1 2 3 27 27 H 0.97006 * 119.99949 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.47594 * 59.99283 * 12 10 9 29 29 H 1.09008 * 109.46878 * 299.99451 * 12 10 9 30 30 H 0.96999 * 119.99388 * 359.97438 * 13 12 10 31 31 H 1.08998 * 109.47553 * 59.99920 * 16 14 13 32 32 H 1.09000 * 109.46954 * 299.99105 * 16 14 13 33 33 H 1.08998 * 109.46974 * 59.99795 * 17 16 14 34 34 H 1.08995 * 109.47509 * 299.99608 * 17 16 14 35 35 H 1.08000 * 120.47926 * 0.05278 * 21 20 18 36 36 H 1.08007 * 120.74949 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.30420 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.52925 * 179.72223 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1956 -5.9765 -0.0016 14 6 1.7463 -7.2472 -0.0017 15 8 0.5539 -7.4687 -0.0008 16 6 2.7256 -8.3926 -0.0028 17 6 1.9605 -9.7176 -0.0019 18 6 2.9398 -10.8631 -0.0037 19 8 4.1315 -10.6416 -0.0049 20 6 2.4479 -12.2542 -0.0027 21 6 3.3594 -13.3108 -0.0049 22 6 2.8815 -14.6114 -0.0044 23 6 1.5098 -14.8122 -0.0024 24 6 0.6616 -13.7153 -0.0067 25 7 1.1403 -12.4911 -0.0013 26 1 -0.4849 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0005 28 1 0.6172 -4.9205 -0.8913 29 1 0.6167 -4.9209 0.8887 30 1 3.1492 -5.7992 -0.0019 31 1 3.3530 -8.3352 0.8867 32 1 3.3515 -8.3347 -0.8933 33 1 1.3328 -9.7753 -0.8912 34 1 1.3349 -9.7754 0.8887 35 1 4.4219 -13.1176 -0.0064 36 1 3.5623 -15.4499 -0.0065 37 1 1.1056 -15.8137 -0.0025 38 1 -0.4074 -13.8690 -0.0097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344182372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:42 Heat of formation + Delta-G solvation = -105.043211 kcal Electronic energy + Delta-G solvation = -22724.796247 eV Core-core repulsion = 18952.174214 eV Total energy + Delta-G solvation = -3772.622033 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61736 -40.97880 -40.06710 -39.64943 -36.26338 -35.28671 -34.23817 -33.43469 -33.32697 -32.45379 -29.69043 -27.51322 -26.24596 -24.75494 -24.15705 -21.56088 -21.38614 -20.85703 -20.06138 -18.92180 -18.04635 -17.51083 -17.22335 -17.21495 -16.89170 -16.72917 -16.45010 -16.28607 -15.70426 -15.62146 -15.45060 -15.30285 -14.67086 -14.48978 -14.09119 -13.99944 -13.89601 -13.56196 -13.39204 -13.01490 -12.91378 -12.81717 -12.45258 -12.19066 -12.11572 -11.58672 -11.27756 -11.02745 -10.95090 -10.57050 -10.40054 -10.21331 -10.19419 -10.08360 -8.51858 -6.02099 -0.54973 0.26505 1.20800 1.34692 1.42627 1.56759 1.59004 1.90320 1.99127 2.30740 2.73632 2.83121 3.12859 3.15255 3.41334 3.65013 3.96537 3.98569 4.04435 4.10260 4.10609 4.20568 4.26002 4.43708 4.44916 4.51570 4.65813 4.75604 4.84676 5.00509 5.09089 5.15942 5.28973 5.38302 5.64123 5.91323 6.19984 6.45137 6.53149 6.87330 7.02946 7.16193 7.43658 7.93922 8.65273 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.052149 B = 0.001915 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.799216 B =14617.520204 C =15128.570521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.120 3.880 13 N -0.710 5.710 14 C 0.516 3.484 15 O -0.577 6.577 16 C -0.125 4.125 17 C -0.129 4.129 18 C 0.419 3.581 19 O -0.466 6.466 20 C 0.016 3.984 21 C -0.124 4.124 22 C -0.086 4.086 23 C -0.131 4.131 24 C 0.083 3.917 25 N -0.469 5.469 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.414 0.586 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.147 0.853 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 -30.106 -0.020 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.007 4.007 13 N -0.364 5.364 14 C 0.304 3.696 15 O -0.457 6.457 16 C -0.165 4.165 17 C -0.166 4.166 18 C 0.297 3.703 19 O -0.340 6.340 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.111 4.111 23 C -0.150 4.150 24 C -0.078 4.078 25 N -0.181 5.181 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.252 0.748 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.165 0.835 36 H 0.190 0.810 37 H 0.196 0.804 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.517 -29.198 -0.016 29.237 hybrid contribution 0.601 0.520 0.001 0.795 sum 2.118 -28.678 -0.016 28.756 Atomic orbital electron populations 1.69690 1.06992 1.29579 1.49329 1.26140 0.96561 1.02701 0.95776 0.84797 0.78081 0.76675 0.78327 1.19501 1.19599 1.19589 1.19780 0.92969 0.83584 1.50355 0.89619 1.41857 1.09600 1.04627 1.63440 1.20470 0.88137 0.85994 0.83508 1.90477 1.15228 1.87566 1.58012 1.20781 0.91771 0.83930 1.04256 1.45781 1.11418 1.04711 1.74477 1.21041 0.89751 0.83912 0.74929 1.90683 1.18215 1.85218 1.51575 1.21464 0.97427 0.90740 1.06838 1.21516 0.97987 0.90471 1.06658 1.22481 0.88891 0.89305 0.69635 1.90527 1.19239 1.87110 1.37145 1.21614 0.90644 0.95599 1.03983 1.22491 1.01765 0.93493 0.96638 1.22073 0.96908 0.96930 0.95233 1.22919 0.93917 1.02313 0.95891 1.23473 1.02519 0.86762 0.95000 1.67635 1.14131 1.26521 1.09826 0.91057 0.76680 0.88750 0.88745 0.74784 0.87044 0.87037 0.87347 0.87340 0.83538 0.80966 0.80426 0.79562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.93 13.05 21.66 0.28 -48.64 16 2 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 3 Si 1.00 42.10 29.55 68.60 2.03 44.13 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.34 -18.79 9.68 84.04 0.81 -17.98 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.41 5.29 -306.99 -1.62 -30.04 16 10 C 0.43 20.18 7.85 87.66 0.69 20.87 16 11 O -0.62 -32.75 15.24 -3.08 -0.05 -32.80 16 12 C 0.12 4.44 6.15 85.63 0.53 4.97 16 13 N -0.71 -23.42 5.53 -466.79 -2.58 -26.00 16 14 C 0.52 15.69 7.83 87.66 0.69 16.38 16 15 O -0.58 -20.80 15.98 -3.03 -0.05 -20.85 16 16 C -0.13 -2.90 4.99 29.85 0.15 -2.75 16 17 C -0.13 -2.86 4.47 29.85 0.13 -2.73 16 18 C 0.42 9.18 7.13 28.15 0.20 9.38 16 19 O -0.47 -11.68 15.95 -2.80 -0.04 -11.73 16 20 C 0.02 0.31 6.73 41.76 0.28 0.59 16 21 C -0.12 -1.81 9.64 22.66 0.22 -1.59 16 22 C -0.09 -0.71 10.17 22.44 0.23 -0.48 16 23 C -0.13 -0.86 10.12 22.47 0.23 -0.64 16 24 C 0.08 0.95 11.18 84.85 0.95 1.90 16 25 N -0.47 -8.79 9.79 -185.16 -1.81 -10.61 16 26 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.40 19.42 7.90 -92.70 -0.73 18.69 16 28 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 30 H 0.41 13.53 7.44 -92.71 -0.69 12.84 16 31 H 0.11 2.35 8.10 -2.39 -0.02 2.33 16 32 H 0.11 2.35 8.10 -2.39 -0.02 2.34 16 33 H 0.11 2.49 8.10 -2.39 -0.02 2.47 16 34 H 0.11 2.49 8.10 -2.39 -0.02 2.47 16 35 H 0.15 2.02 7.64 -2.91 -0.02 2.00 16 36 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.18 -0.17 8.06 -2.91 -0.02 -0.19 16 38 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -72.43 344.43 1.42 -71.01 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -0.30 Total: 37.73 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 5.57 Total: 27.79 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -5.73 Total: -115.28 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -0.14 Total: -65.38 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -72.43 1.42 -71.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344182372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.035 kcal (2) G-P(sol) polarization free energy of solvation -72.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds