Wall clock time and date at job start Fri Apr 10 2020 14:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47129 * 78.34261 * 3 2 1 5 5 C 1.37090 * 120.00012 * 264.22900 * 4 3 2 6 6 H 1.08001 * 120.00377 * 197.72365 * 5 4 3 7 7 C 1.38953 * 120.00167 * 17.72375 * 5 4 3 8 8 N 1.31414 * 119.99811 * 21.41554 * 7 5 4 9 9 Si 1.86795 * 120.00281 * 201.41684 * 7 5 4 10 10 H 1.48497 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47156 * 119.99645 * 9 7 5 12 12 H 1.48504 * 109.47198 * 239.99575 * 9 7 5 13 13 C 1.34777 * 120.00252 * 84.22930 * 4 3 2 14 14 O 1.21290 * 120.00376 * 179.97438 * 13 4 3 15 15 C 1.50705 * 119.99854 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47093 * 179.97438 * 15 13 4 17 17 C 1.52999 * 109.47144 * 179.97438 * 16 15 13 18 18 N 1.46499 * 109.47462 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00192 * 180.02562 * 18 17 16 20 20 O 1.21694 * 119.99905 * 359.97438 * 19 18 17 21 21 C 1.46657 * 119.99925 * 179.97438 * 19 18 17 22 22 C 1.36541 * 125.98761 * 179.97438 * 21 19 18 23 23 C 1.40369 * 106.71024 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11175 * 359.97438 * 23 22 21 25 25 O 1.33932 * 108.76996 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47105 * 318.34189 * 3 2 1 27 27 H 1.09005 * 109.46582 * 198.33982 * 3 2 1 28 28 H 0.97003 * 120.00223 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47075 * 59.99937 * 15 13 4 30 30 H 1.09000 * 109.46687 * 299.99855 * 15 13 4 31 31 H 1.09001 * 109.46980 * 60.00163 * 16 15 13 32 32 H 1.08993 * 109.47648 * 299.99998 * 16 15 13 33 33 H 1.08996 * 109.47429 * 59.99736 * 17 16 15 34 34 H 1.09006 * 109.47095 * 300.00455 * 17 16 15 35 35 H 0.97002 * 119.99903 * 0.02562 * 18 17 16 36 36 H 1.08002 * 126.64567 * 0.02562 * 22 21 19 37 37 H 1.08000 * 126.44510 * 180.02562 * 23 22 21 38 38 H 1.08000 * 125.61730 * 180.26079 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.2782 -1.3527 5 6 3.4381 -1.5575 -1.7080 6 1 4.0546 -1.7300 -2.5778 7 6 2.9912 -2.6322 -0.9490 8 7 1.9376 -2.4972 -0.1753 9 14 3.8882 -4.2688 -1.0282 10 1 5.0343 -4.1602 -1.9662 11 1 4.3879 -4.6254 0.3240 12 1 2.9557 -5.3217 -1.5049 13 6 3.2100 0.7229 -2.2480 14 8 3.6149 0.4921 -3.3678 15 6 2.8351 2.1293 -1.8573 16 6 3.0563 3.0653 -3.0471 17 6 2.6750 4.4930 -2.6507 18 7 2.8863 5.3892 -3.7901 19 6 2.6159 6.7043 -3.6723 20 8 2.1959 7.1472 -2.6195 21 6 2.8279 7.6015 -4.8129 22 6 2.5953 8.9469 -4.8294 23 6 2.9326 9.3990 -6.1148 24 6 3.3515 8.3234 -6.8174 25 8 3.2868 7.2422 -6.0297 26 1 2.9717 -0.7669 0.6830 27 1 2.9708 0.9764 0.3234 28 1 1.6258 -3.2473 0.3548 29 1 3.4558 2.4518 -1.0213 30 1 1.7860 2.1570 -1.5628 31 1 2.4359 2.7428 -3.8833 32 1 4.1054 3.0374 -3.3412 33 1 3.2950 4.8157 -1.8143 34 1 1.6257 4.5205 -2.3568 35 1 3.2208 5.0361 -4.6294 36 1 2.2239 9.5470 -4.0119 37 1 2.8699 10.4154 -6.4744 38 1 3.6871 8.3344 -7.8439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355710661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:58 Heat of formation + Delta-G solvation = -22.347787 kcal Electronic energy + Delta-G solvation = -23446.324963 eV Core-core repulsion = 19677.288872 eV Total energy + Delta-G solvation = -3769.036090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.96450 -39.62278 -38.91571 -36.06601 -35.52883 -34.36598 -33.42281 -32.59341 -31.78160 -30.22993 -27.63727 -27.02355 -24.74666 -23.26076 -22.09715 -21.67462 -20.54570 -19.12941 -18.60948 -17.92937 -16.68601 -16.65391 -16.52767 -16.33308 -15.81470 -15.64022 -14.73002 -14.52742 -14.29582 -14.14021 -13.42744 -13.37158 -13.31162 -13.01930 -12.99318 -12.78448 -12.27978 -12.03885 -11.79484 -11.56921 -11.42689 -11.18103 -11.13203 -10.73398 -10.54945 -10.49088 -10.38856 -10.38803 -10.29257 -9.34683 -9.29368 -8.94723 -8.64062 -8.07375 -6.53290 -4.02488 0.78587 2.04235 2.39641 2.97888 3.02717 3.06748 3.20859 3.26823 3.53221 3.77309 3.96444 4.09875 4.39068 4.57675 4.65819 4.71027 4.85955 5.10876 5.14130 5.23442 5.30368 5.31483 5.44273 5.56360 5.64720 5.71648 5.75851 5.92471 5.98614 6.10196 6.19705 6.33637 6.43073 6.49041 6.53249 7.28260 7.44599 7.87096 7.89155 8.25135 8.72281 8.97587 9.17186 9.70749 10.52890 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.029555 B = 0.002449 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.171227 B =11429.146231 C =12140.133108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.245 3.755 3 C 0.221 3.779 4 N -0.444 5.444 5 C -0.313 4.313 6 H 0.109 0.891 7 C 0.031 3.969 8 N -0.877 5.877 9 Si 0.926 3.074 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.456 3.544 14 O -0.575 6.575 15 C -0.133 4.133 16 C -0.111 4.111 17 C 0.116 3.884 18 N -0.715 5.715 19 C 0.600 3.400 20 O -0.522 6.522 21 C -0.077 4.077 22 C -0.123 4.123 23 C -0.227 4.227 24 C -0.007 4.007 25 O -0.163 6.163 26 H 0.127 0.873 27 H 0.085 0.915 28 H 0.273 0.727 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.407 0.593 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 18.556 -6.452 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.073 4.073 3 C 0.093 3.907 4 N -0.164 5.164 5 C -0.440 4.440 6 H 0.126 0.874 7 C -0.173 4.173 8 N -0.516 5.516 9 Si 0.753 3.247 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.209 1.209 13 C 0.244 3.756 14 O -0.458 6.458 15 C -0.174 4.174 16 C -0.149 4.149 17 C -0.007 4.007 18 N -0.365 5.365 19 C 0.386 3.614 20 O -0.400 6.400 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.246 4.246 24 C -0.077 4.077 25 O -0.058 6.058 26 H 0.145 0.855 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.243 0.757 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.374 18.263 -6.170 19.570 hybrid contribution 0.703 -0.954 -0.353 1.237 sum 4.078 17.309 -6.524 18.941 Atomic orbital electron populations 1.80905 1.13619 1.12379 1.08333 1.29320 0.95379 0.89976 0.92640 1.18747 0.81598 1.01973 0.88362 1.43664 1.56540 1.07865 1.08355 1.19747 1.29957 0.80370 1.13970 0.87380 1.25285 0.95013 0.99856 0.97115 1.69870 1.19887 1.33270 1.28553 0.85862 0.79572 0.81044 0.78243 1.19121 1.20452 1.20922 1.20081 0.83819 0.86430 0.85231 1.90540 1.50376 1.84353 1.20544 1.21505 1.02867 0.94121 0.98923 1.21460 1.03401 0.91173 0.98896 1.21579 1.02105 0.88976 0.88064 1.45954 1.66319 1.07209 1.17059 1.16551 0.78251 0.81500 0.85125 1.90892 1.46251 1.75990 1.26887 1.22166 1.09874 0.95285 0.85563 1.21995 1.00683 0.93092 0.98577 1.21878 1.07459 1.00761 0.94469 1.24440 1.02379 0.83822 0.97072 1.84083 1.64967 1.36192 1.20575 0.85529 0.89700 0.91664 0.89589 0.90001 0.90585 0.90411 0.90835 0.90942 0.75744 0.82206 0.82587 0.77303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.07 18.54 42.15 0.78 -10.29 16 2 C 0.25 5.29 12.95 -20.76 -0.27 5.02 16 3 C 0.22 4.21 4.91 -6.83 -0.03 4.17 16 4 N -0.44 -9.99 2.60 -117.93 -0.31 -10.30 16 5 C -0.31 -7.89 9.32 -14.94 -0.14 -8.03 16 6 H 0.11 2.89 7.39 -52.49 -0.39 2.50 16 7 C 0.03 0.75 4.87 -17.47 -0.08 0.67 16 8 N -0.88 -21.83 9.48 55.50 0.53 -21.31 16 9 Si 0.93 19.34 29.60 -169.99 -5.03 14.31 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.46 9.75 7.57 -10.98 -0.08 9.67 16 14 O -0.58 -14.28 15.63 5.55 0.09 -14.20 16 15 C -0.13 -2.07 4.30 -27.88 -0.12 -2.19 16 16 C -0.11 -1.52 4.62 -26.73 -0.12 -1.65 16 17 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 18 N -0.71 -8.31 5.55 -61.63 -0.34 -8.65 16 19 C 0.60 7.83 7.79 -12.86 -0.10 7.73 16 20 O -0.52 -8.33 16.86 5.19 0.09 -8.24 16 21 C -0.08 -0.86 7.13 -36.80 -0.26 -1.12 16 22 C -0.12 -1.21 10.62 -39.39 -0.42 -1.63 16 23 C -0.23 -1.66 10.88 -39.89 -0.43 -2.09 16 24 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 25 O -0.16 -1.57 10.40 4.98 0.05 -1.52 16 26 H 0.13 2.49 6.46 -51.93 -0.34 2.15 16 27 H 0.09 1.20 6.68 -51.93 -0.35 0.85 16 28 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 30 H 0.08 1.27 7.51 -51.93 -0.39 0.88 16 31 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.41 4.07 8.23 -40.82 -0.34 3.73 16 36 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.21 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -33.12 341.34 -5.01 -38.13 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.27 Total: 4.69 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -1.73 Total: 12.24 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.66 Total: -50.55 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.23 Total: -23.96 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.12 -5.01 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355710661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.783 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds