Wall clock time and date at job start Fri Apr 10 2020 14:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47129 * 78.34261 * 3 2 1 5 5 C 1.37090 * 120.00012 * 264.22900 * 4 3 2 6 6 H 1.08001 * 120.00377 * 197.72365 * 5 4 3 7 7 C 1.38953 * 120.00167 * 17.72375 * 5 4 3 8 8 N 1.31414 * 119.99811 * 21.41554 * 7 5 4 9 9 Si 1.86795 * 120.00281 * 201.41684 * 7 5 4 10 10 H 1.48497 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47156 * 119.99645 * 9 7 5 12 12 H 1.48504 * 109.47198 * 239.99575 * 9 7 5 13 13 C 1.34777 * 120.00252 * 84.22930 * 4 3 2 14 14 O 1.21290 * 120.00376 * 179.97438 * 13 4 3 15 15 C 1.50705 * 119.99854 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47093 * 179.97438 * 15 13 4 17 17 C 1.52999 * 109.47144 * 179.97438 * 16 15 13 18 18 N 1.46499 * 109.47462 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00192 * 180.02562 * 18 17 16 20 20 O 1.21694 * 119.99905 * 359.97438 * 19 18 17 21 21 C 1.46657 * 119.99925 * 179.97438 * 19 18 17 22 22 C 1.36541 * 125.98761 * 179.97438 * 21 19 18 23 23 C 1.40369 * 106.71024 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11175 * 359.97438 * 23 22 21 25 25 O 1.33932 * 108.76996 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47105 * 318.34189 * 3 2 1 27 27 H 1.09005 * 109.46582 * 198.33982 * 3 2 1 28 28 H 0.97003 * 120.00223 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.47075 * 59.99937 * 15 13 4 30 30 H 1.09000 * 109.46687 * 299.99855 * 15 13 4 31 31 H 1.09001 * 109.46980 * 60.00163 * 16 15 13 32 32 H 1.08993 * 109.47648 * 299.99998 * 16 15 13 33 33 H 1.08996 * 109.47429 * 59.99736 * 17 16 15 34 34 H 1.09006 * 109.47095 * 300.00455 * 17 16 15 35 35 H 0.97002 * 119.99903 * 0.02562 * 18 17 16 36 36 H 1.08002 * 126.64567 * 0.02562 * 22 21 19 37 37 H 1.08000 * 126.44510 * 180.02562 * 23 22 21 38 38 H 1.08000 * 125.61730 * 180.26079 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.2782 -1.3527 5 6 3.4381 -1.5575 -1.7080 6 1 4.0546 -1.7300 -2.5778 7 6 2.9912 -2.6322 -0.9490 8 7 1.9376 -2.4972 -0.1753 9 14 3.8882 -4.2688 -1.0282 10 1 5.0343 -4.1602 -1.9662 11 1 4.3879 -4.6254 0.3240 12 1 2.9557 -5.3217 -1.5049 13 6 3.2100 0.7229 -2.2480 14 8 3.6149 0.4921 -3.3678 15 6 2.8351 2.1293 -1.8573 16 6 3.0563 3.0653 -3.0471 17 6 2.6750 4.4930 -2.6507 18 7 2.8863 5.3892 -3.7901 19 6 2.6159 6.7043 -3.6723 20 8 2.1959 7.1472 -2.6195 21 6 2.8279 7.6015 -4.8129 22 6 2.5953 8.9469 -4.8294 23 6 2.9326 9.3990 -6.1148 24 6 3.3515 8.3234 -6.8174 25 8 3.2868 7.2422 -6.0297 26 1 2.9717 -0.7669 0.6830 27 1 2.9708 0.9764 0.3234 28 1 1.6258 -3.2473 0.3548 29 1 3.4558 2.4518 -1.0213 30 1 1.7860 2.1570 -1.5628 31 1 2.4359 2.7428 -3.8833 32 1 4.1054 3.0374 -3.3412 33 1 3.2950 4.8157 -1.8143 34 1 1.6257 4.5205 -2.3568 35 1 3.2208 5.0361 -4.6294 36 1 2.2239 9.5470 -4.0119 37 1 2.8699 10.4154 -6.4744 38 1 3.6871 8.3344 -7.8439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355710661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:58 Heat of formation + Delta-G solvation = -45.187041 kcal Electronic energy + Delta-G solvation = -23447.315347 eV Core-core repulsion = 19677.288872 eV Total energy + Delta-G solvation = -3770.026475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.62971 -40.76391 -40.43838 -37.66906 -36.78096 -36.11221 -34.17063 -33.90099 -33.40176 -31.00633 -29.23636 -28.32313 -26.31731 -24.25016 -22.91176 -22.60069 -21.43896 -20.59365 -19.72955 -19.47116 -18.21914 -17.92026 -17.43002 -17.30675 -16.96462 -16.73329 -16.33422 -15.90765 -15.73383 -15.22916 -14.80113 -14.68880 -14.39995 -14.10855 -13.92797 -13.87652 -13.58481 -13.49804 -13.25164 -13.11696 -13.03463 -12.84444 -12.43590 -12.31842 -12.11963 -12.04592 -11.78269 -11.50853 -11.10831 -11.04344 -10.39491 -10.30879 -9.90020 -9.63844 -8.39198 -5.94297 0.02570 1.38925 1.43592 1.49130 1.60968 1.66939 1.84681 2.08224 2.08456 2.20797 2.28047 2.37702 3.01841 3.15482 3.62733 3.70362 3.84329 3.96740 4.05488 4.10386 4.12715 4.35913 4.51462 4.62137 4.64478 4.71915 4.82048 4.91526 4.94130 4.96668 5.17973 5.18265 5.33847 5.41427 5.50496 5.84398 6.06454 6.38843 6.42075 6.95217 7.03069 7.15003 7.39117 7.95769 8.64703 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.029555 B = 0.002449 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.171227 B =11429.146231 C =12140.133108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.258 3.742 3 C 0.221 3.779 4 N -0.458 5.458 5 C -0.338 4.338 6 H 0.082 0.918 7 C 0.003 3.997 8 N -0.894 5.894 9 Si 0.985 3.015 10 H -0.271 1.271 11 H -0.264 1.264 12 H -0.291 1.291 13 C 0.449 3.551 14 O -0.617 6.617 15 C -0.125 4.125 16 C -0.099 4.099 17 C 0.124 3.876 18 N -0.710 5.710 19 C 0.599 3.401 20 O -0.561 6.561 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.234 4.234 24 C 0.009 3.991 25 O -0.173 6.173 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.273 0.727 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.415 0.585 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.141 19.972 -6.766 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.060 4.060 3 C 0.094 3.906 4 N -0.178 5.178 5 C -0.466 4.466 6 H 0.100 0.900 7 C -0.199 4.199 8 N -0.533 5.533 9 Si 0.810 3.190 10 H -0.195 1.195 11 H -0.188 1.188 12 H -0.218 1.218 13 C 0.240 3.760 14 O -0.503 6.503 15 C -0.165 4.165 16 C -0.138 4.138 17 C 0.001 3.999 18 N -0.360 5.360 19 C 0.386 3.614 20 O -0.442 6.442 21 C -0.164 4.164 22 C -0.146 4.146 23 C -0.253 4.253 24 C -0.060 4.060 25 O -0.068 6.068 26 H 0.140 0.860 27 H 0.160 0.840 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.251 0.749 36 H 0.177 0.823 37 H 0.202 0.798 38 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.352 19.678 -6.476 21.169 hybrid contribution 0.417 -1.334 -0.394 1.452 sum 4.769 18.344 -6.870 20.161 Atomic orbital electron populations 1.80909 1.14878 1.13837 1.09512 1.29831 0.95881 0.88756 0.91490 1.19103 0.79953 1.04917 0.86582 1.43851 1.56749 1.07312 1.09928 1.19627 1.30666 0.82296 1.13980 0.90024 1.25876 0.95230 1.02203 0.96565 1.69949 1.20408 1.33985 1.28922 0.84997 0.78100 0.77283 0.78640 1.19532 1.18844 1.21757 1.21086 0.82118 0.88323 0.84468 1.90511 1.51893 1.85462 1.22407 1.21509 1.03719 0.90433 1.00851 1.21312 1.03058 0.91690 0.97710 1.21433 1.01997 0.87943 0.88502 1.45891 1.65910 1.06930 1.17269 1.16772 0.77516 0.81776 0.85300 1.90855 1.48206 1.76673 1.28467 1.21856 1.12963 0.95427 0.86115 1.22276 0.99712 0.92779 0.99832 1.22234 1.07380 1.02382 0.93287 1.25404 0.99782 0.82723 0.98095 1.84074 1.65112 1.37417 1.20246 0.85987 0.83954 0.91664 0.85587 0.89528 0.92244 0.90409 0.89788 0.91409 0.74869 0.82263 0.79835 0.73004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.69 18.54 20.01 0.37 -23.32 16 2 C 0.26 10.85 12.95 89.44 1.16 12.01 16 3 C 0.22 8.02 4.91 84.57 0.42 8.44 16 4 N -0.46 -20.38 2.60 -645.41 -1.68 -22.06 16 5 C -0.34 -17.20 9.32 84.04 0.78 -16.42 16 6 H 0.08 4.51 7.39 -2.91 -0.02 4.49 16 7 C 0.00 0.15 4.87 84.93 0.41 0.57 16 8 N -0.89 -44.16 9.48 21.66 0.21 -43.95 16 9 Si 0.98 39.64 29.60 68.60 2.03 41.67 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 12 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 13 C 0.45 18.99 7.57 87.66 0.66 19.66 16 14 O -0.62 -31.10 15.63 -3.06 -0.05 -31.15 16 15 C -0.12 -3.63 4.30 29.85 0.13 -3.50 16 16 C -0.10 -2.62 4.62 30.59 0.14 -2.48 16 17 C 0.12 2.87 5.67 86.38 0.49 3.36 16 18 N -0.71 -16.16 5.55 -467.10 -2.59 -18.75 16 19 C 0.60 15.64 7.79 86.44 0.67 16.31 16 20 O -0.56 -18.10 16.86 -4.33 -0.07 -18.17 16 21 C -0.11 -2.46 7.13 24.07 0.17 -2.29 16 22 C -0.13 -2.35 10.62 22.39 0.24 -2.12 16 23 C -0.23 -2.83 10.88 22.07 0.24 -2.59 16 24 C 0.01 0.10 12.08 67.10 0.81 0.91 16 25 O -0.17 -3.08 10.40 -5.08 -0.05 -3.13 16 26 H 0.12 4.62 6.46 -2.39 -0.02 4.60 16 27 H 0.14 3.48 6.68 -2.38 -0.02 3.46 16 28 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 29 H 0.13 2.68 7.42 -2.39 -0.02 2.67 16 30 H 0.09 2.51 7.51 -2.39 -0.02 2.49 16 31 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.08 2.06 8.10 -2.39 -0.02 2.05 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.41 8.10 8.23 -92.71 -0.76 7.34 16 36 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.25 0.13 8.06 -2.91 -0.02 0.11 16 Total: -1.00 -74.10 341.34 4.84 -69.26 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.35 Total: 17.75 kcal Atomic # 6 Polarization: 25.54 SS G_CDS: 6.33 Total: 31.86 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -3.69 Total: -108.09 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -0.17 Total: -52.45 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -74.10 4.84 -69.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355710661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.074 kcal (2) G-P(sol) polarization free energy of solvation -74.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds