Wall clock time and date at job start Fri Apr 10 2020 14:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48502 * 109.46884 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47243 * 299.99690 * 3 2 1 6 6 H 1.48490 * 109.47401 * 60.00329 * 3 2 1 7 7 C 1.38950 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99795 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99692 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99685 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99757 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.46902 * 180.02562 * 12 10 9 14 14 C 1.34756 * 116.99892 * 180.02562 * 13 12 10 15 15 O 1.21516 * 119.99994 * 359.97438 * 14 13 12 16 16 C 1.47407 * 120.00020 * 180.02562 * 14 13 12 17 17 C 1.40405 * 120.48134 * 180.02562 * 16 14 13 18 18 C 1.36828 * 118.48898 * 179.97438 * 17 16 14 19 19 C 1.39415 * 119.38729 * 0.27052 * 18 17 16 20 20 N 1.38420 * 119.53700 * 179.72979 * 19 18 17 21 21 C 1.46507 * 120.00022 * 355.21888 * 20 19 18 22 22 C 1.53001 * 117.49893 * 229.34895 * 21 20 19 23 23 C 1.52997 * 117.50063 * 160.68789 * 21 20 19 24 24 N 1.32624 * 120.92861 * 359.42686 * 19 18 17 25 25 C 1.31655 * 121.64172 * 0.59134 * 24 19 18 26 26 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 27 27 H 0.96991 * 120.00029 * 0.02562 * 9 7 2 28 28 H 1.09006 * 109.47035 * 60.00736 * 12 10 9 29 29 H 1.08993 * 109.47560 * 300.00242 * 12 10 9 30 30 H 1.08001 * 120.75609 * 359.94920 * 17 16 14 31 31 H 1.08005 * 120.30961 * 180.02562 * 18 17 16 32 32 H 0.97000 * 120.00348 * 175.22152 * 20 19 18 33 33 H 1.09000 * 115.54892 * 15.01931 * 21 20 19 34 34 H 1.08996 * 117.49978 * 359.97438 * 22 21 20 35 35 H 1.08999 * 117.49251 * 145.02188 * 22 21 20 36 36 H 1.08996 * 117.50054 * 214.98374 * 23 21 20 37 37 H 1.09012 * 117.49652 * 359.97438 * 23 21 20 38 38 H 1.07999 * 119.74219 * 179.68050 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 8 2.1875 -5.9665 -0.0017 14 6 1.6724 -7.2118 -0.0019 15 8 0.4678 -7.3710 -0.0009 16 6 2.5704 -8.3808 -0.0020 17 6 2.0447 -9.6827 -0.0027 18 6 2.9154 -10.7382 -0.0034 19 6 4.2878 -10.4928 0.0024 20 7 5.1714 -11.5583 0.0074 21 6 4.6654 -12.9292 0.1124 22 6 5.3110 -13.8425 1.1565 23 6 5.5940 -14.0610 -0.3319 24 7 4.7587 -9.2530 -0.0029 25 6 3.9561 -8.2094 -0.0022 26 1 -0.4850 0.8401 0.0004 27 1 0.3535 -2.3907 -0.0005 28 1 0.6162 -4.9205 -0.8904 29 1 0.6182 -4.9209 0.8896 30 1 0.9773 -9.8473 -0.0023 31 1 2.5430 -11.7520 -0.0043 32 1 6.1257 -11.3973 -0.0585 33 1 3.5983 -13.0518 -0.0726 34 1 6.1124 -13.4236 1.7649 35 1 4.6685 -14.5662 1.6580 36 1 5.1378 -14.9284 -0.8089 37 1 6.5814 -13.7856 -0.7028 38 1 4.3728 -7.2130 -0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:58 Heat of formation + Delta-G solvation = -47.005203 kcal Electronic energy + Delta-G solvation = -23018.423012 eV Core-core repulsion = 19248.317695 eV Total energy + Delta-G solvation = -3770.105316 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84517 -39.80751 -38.27256 -37.95380 -36.00595 -34.19590 -33.96600 -32.69720 -31.35572 -30.16244 -28.13197 -24.92030 -24.49018 -23.70623 -22.93940 -21.99389 -20.85683 -19.53954 -18.51251 -18.04747 -17.73732 -17.28386 -16.40835 -16.23374 -15.68455 -15.61227 -15.22257 -14.69600 -14.60027 -14.30171 -13.93242 -13.89994 -13.56104 -13.29962 -13.00076 -12.51797 -12.43471 -12.16618 -12.07471 -11.97374 -11.59862 -11.13081 -11.07642 -10.53696 -10.36705 -10.35810 -10.31882 -10.27529 -10.03704 -9.66751 -9.58794 -8.48761 -8.08446 -8.05309 -6.47357 -3.89159 0.61140 1.12671 2.50421 2.63864 2.77226 3.13983 3.25934 3.27091 3.33686 3.75268 3.78810 4.13461 4.16242 4.21946 4.36633 4.45417 4.53263 4.70299 4.80332 4.88019 5.08101 5.10849 5.18110 5.20080 5.35036 5.45362 5.51652 5.56610 5.74804 5.74933 5.95600 6.10680 6.20097 6.57610 6.66013 7.06027 7.50746 7.78867 7.91256 8.01262 8.51632 9.10090 9.42612 9.92498 10.69980 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.040762 B = 0.002155 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.754000 B =12988.781053 C =13585.357607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.575 6.575 12 C 0.063 3.937 13 O -0.323 6.323 14 C 0.516 3.484 15 O -0.519 6.519 16 C -0.237 4.237 17 C 0.029 3.971 18 C -0.251 4.251 19 C 0.430 3.570 20 N -0.687 5.687 21 C 0.082 3.918 22 C -0.195 4.195 23 C -0.186 4.186 24 N -0.550 5.550 25 C 0.220 3.780 26 H 0.273 0.727 27 H 0.395 0.605 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.409 0.591 33 H 0.135 0.865 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -26.689 0.209 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.125 0.875 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.459 6.459 12 C -0.015 4.015 13 O -0.238 6.238 14 C 0.361 3.639 15 O -0.410 6.410 16 C -0.243 4.243 17 C 0.004 3.996 18 C -0.276 4.276 19 C 0.194 3.806 20 N -0.315 5.315 21 C -0.025 4.025 22 C -0.234 4.234 23 C -0.224 4.224 24 N -0.268 5.268 25 C 0.061 3.939 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.245 0.755 33 H 0.153 0.847 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.425 -26.581 0.213 27.348 hybrid contribution -0.946 0.774 -0.001 1.222 sum 5.479 -25.807 0.212 26.383 Atomic orbital electron populations 1.69625 1.05989 1.28328 1.49868 1.25313 0.95690 0.99861 0.96982 0.85742 0.79721 0.80784 0.77759 1.19088 1.20664 1.20661 1.19779 0.93512 0.81749 1.47960 0.87542 1.41709 1.09379 1.04094 1.63930 1.19330 0.88339 0.84079 0.85835 1.90560 1.13396 1.86809 1.55163 1.22745 0.90809 0.84365 1.03581 1.86575 1.40021 1.13899 1.83288 1.20812 0.86928 0.83424 0.72740 1.90813 1.16022 1.86953 1.47177 1.19815 0.94442 0.91949 1.18116 1.21141 1.00943 0.89913 0.87631 1.21078 0.91817 1.00543 1.14118 1.18566 0.87832 0.86989 0.87214 1.43809 1.08340 1.01877 1.77521 1.21663 0.97946 0.78592 1.04284 1.23535 1.04323 1.03081 0.92433 1.23408 1.01335 0.99950 0.97736 1.67368 1.39711 0.97457 1.22214 1.23112 0.88416 0.97488 0.84901 0.91719 0.77157 0.89465 0.89470 0.83529 0.84313 0.75452 0.84727 0.88271 0.87777 0.87576 0.88248 0.80300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 9 N -0.55 -14.07 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.64 7.86 -10.99 -0.09 10.55 16 11 O -0.58 -15.96 16.08 -14.11 -0.23 -16.19 16 12 C 0.06 1.21 5.95 36.00 0.21 1.42 16 13 O -0.32 -6.12 9.02 -47.33 -0.43 -6.54 16 14 C 0.52 8.64 7.89 34.46 0.27 8.91 16 15 O -0.52 -9.38 16.20 -19.28 -0.31 -9.69 16 16 C -0.24 -3.29 5.89 -104.83 -0.62 -3.91 16 17 C 0.03 0.33 9.65 -39.28 -0.38 -0.05 16 18 C -0.25 -2.37 9.28 -39.65 -0.37 -2.74 16 19 C 0.43 4.55 7.63 -155.29 -1.18 3.36 16 20 N -0.69 -5.31 5.73 -53.96 -0.31 -5.62 16 21 C 0.08 0.43 6.27 -67.93 -0.43 0.01 16 22 C -0.19 -0.84 10.46 -26.69 -0.28 -1.12 16 23 C -0.19 -0.72 10.45 -26.69 -0.28 -1.00 16 24 N -0.55 -7.06 10.38 -12.13 -0.13 -7.19 16 25 C 0.22 3.00 10.79 -17.11 -0.18 2.82 16 26 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.15 1.47 7.73 -52.49 -0.41 1.07 16 31 H 0.14 0.89 5.85 -52.48 -0.31 0.58 16 32 H 0.41 2.92 8.93 -40.82 -0.36 2.56 16 33 H 0.14 0.57 5.89 -51.93 -0.31 0.26 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.18 2.47 7.61 -52.49 -0.40 2.07 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -33.27 342.14 -8.31 -41.58 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -4.15 Total: 9.98 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -3.56 Total: 10.30 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.23 Total: -50.40 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.97 Total: -32.42 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.27 -8.31 -41.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.425 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds