Wall clock time and date at job start Fri Apr 10 2020 14:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48502 * 109.46884 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47243 * 299.99690 * 3 2 1 6 6 H 1.48490 * 109.47401 * 60.00329 * 3 2 1 7 7 C 1.38950 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99795 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99692 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99685 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99757 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.46902 * 180.02562 * 12 10 9 14 14 C 1.34756 * 116.99892 * 180.02562 * 13 12 10 15 15 O 1.21516 * 119.99994 * 359.97438 * 14 13 12 16 16 C 1.47407 * 120.00020 * 180.02562 * 14 13 12 17 17 C 1.40405 * 120.48134 * 180.02562 * 16 14 13 18 18 C 1.36828 * 118.48898 * 179.97438 * 17 16 14 19 19 C 1.39415 * 119.38729 * 0.27052 * 18 17 16 20 20 N 1.38420 * 119.53700 * 179.72979 * 19 18 17 21 21 C 1.46507 * 120.00022 * 355.21888 * 20 19 18 22 22 C 1.53001 * 117.49893 * 229.34895 * 21 20 19 23 23 C 1.52997 * 117.50063 * 160.68789 * 21 20 19 24 24 N 1.32624 * 120.92861 * 359.42686 * 19 18 17 25 25 C 1.31655 * 121.64172 * 0.59134 * 24 19 18 26 26 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 27 27 H 0.96991 * 120.00029 * 0.02562 * 9 7 2 28 28 H 1.09006 * 109.47035 * 60.00736 * 12 10 9 29 29 H 1.08993 * 109.47560 * 300.00242 * 12 10 9 30 30 H 1.08001 * 120.75609 * 359.94920 * 17 16 14 31 31 H 1.08005 * 120.30961 * 180.02562 * 18 17 16 32 32 H 0.97000 * 120.00348 * 175.22152 * 20 19 18 33 33 H 1.09000 * 115.54892 * 15.01931 * 21 20 19 34 34 H 1.08996 * 117.49978 * 359.97438 * 22 21 20 35 35 H 1.08999 * 117.49251 * 145.02188 * 22 21 20 36 36 H 1.08996 * 117.50054 * 214.98374 * 23 21 20 37 37 H 1.09012 * 117.49652 * 359.97438 * 23 21 20 38 38 H 1.07999 * 119.74219 * 179.68050 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 8 2.1875 -5.9665 -0.0017 14 6 1.6724 -7.2118 -0.0019 15 8 0.4678 -7.3710 -0.0009 16 6 2.5704 -8.3808 -0.0020 17 6 2.0447 -9.6827 -0.0027 18 6 2.9154 -10.7382 -0.0034 19 6 4.2878 -10.4928 0.0024 20 7 5.1714 -11.5583 0.0074 21 6 4.6654 -12.9292 0.1124 22 6 5.3110 -13.8425 1.1565 23 6 5.5940 -14.0610 -0.3319 24 7 4.7587 -9.2530 -0.0029 25 6 3.9561 -8.2094 -0.0022 26 1 -0.4850 0.8401 0.0004 27 1 0.3535 -2.3907 -0.0005 28 1 0.6162 -4.9205 -0.8904 29 1 0.6182 -4.9209 0.8896 30 1 0.9773 -9.8473 -0.0023 31 1 2.5430 -11.7520 -0.0043 32 1 6.1257 -11.3973 -0.0585 33 1 3.5983 -13.0518 -0.0726 34 1 6.1124 -13.4236 1.7649 35 1 4.6685 -14.5662 1.6580 36 1 5.1378 -14.9284 -0.8089 37 1 6.5814 -13.7856 -0.7028 38 1 4.3728 -7.2130 -0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:58 Heat of formation + Delta-G solvation = -68.489061 kcal Electronic energy + Delta-G solvation = -23019.354622 eV Core-core repulsion = 19248.317695 eV Total energy + Delta-G solvation = -3771.036926 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90565 -41.00523 -39.95626 -38.68968 -37.45005 -36.01924 -34.90254 -33.58037 -33.40629 -31.18528 -29.66990 -26.67323 -25.50520 -24.71643 -23.24462 -22.74794 -21.88900 -21.40824 -20.06374 -19.44354 -18.75985 -18.34489 -17.67758 -17.51183 -17.38817 -16.54637 -16.38395 -15.93988 -15.83317 -15.69898 -15.34286 -15.04006 -14.69857 -14.21783 -14.07591 -13.95227 -13.67038 -13.55792 -13.22856 -12.94684 -12.87548 -12.45584 -12.40575 -12.10416 -11.84843 -11.83113 -11.57420 -11.40273 -11.14036 -10.77044 -10.60324 -10.49976 -10.10643 -8.82666 -8.51578 -6.01979 -0.38184 0.25784 1.35224 1.36018 1.45805 1.46873 1.59845 1.86966 1.88061 2.30844 2.70965 3.01963 3.06339 3.13991 3.45338 3.67465 3.73399 3.87404 3.87743 3.96460 4.02345 4.05979 4.18530 4.18642 4.24218 4.63739 4.66000 4.80814 4.89875 5.04802 5.09429 5.23205 5.31615 5.33972 5.38466 5.89236 5.90287 6.33574 6.46781 6.63944 6.95663 7.04017 7.41011 7.94628 8.65705 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.040762 B = 0.002155 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.754000 B =12988.781053 C =13585.357607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.558 5.558 10 C 0.438 3.562 11 O -0.617 6.617 12 C 0.073 3.927 13 O -0.341 6.341 14 C 0.519 3.481 15 O -0.536 6.536 16 C -0.258 4.258 17 C 0.030 3.970 18 C -0.237 4.237 19 C 0.427 3.573 20 N -0.677 5.677 21 C 0.062 3.938 22 C -0.192 4.192 23 C -0.175 4.175 24 N -0.572 5.572 25 C 0.215 3.785 26 H 0.281 0.719 27 H 0.400 0.600 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.160 0.840 31 H 0.177 0.823 32 H 0.410 0.590 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -28.741 0.179 29.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.102 0.898 9 N -0.196 5.196 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.004 4.004 13 O -0.256 6.256 14 C 0.365 3.635 15 O -0.427 6.427 16 C -0.265 4.265 17 C 0.005 3.995 18 C -0.261 4.261 19 C 0.189 3.811 20 N -0.304 5.304 21 C -0.043 4.043 22 C -0.231 4.231 23 C -0.214 4.214 24 N -0.290 5.290 25 C 0.056 3.944 26 H 0.090 0.910 27 H 0.235 0.765 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.178 0.822 31 H 0.194 0.806 32 H 0.247 0.753 33 H 0.168 0.832 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.063 -28.690 0.185 29.325 hybrid contribution -0.747 1.206 0.015 1.419 sum 5.316 -27.484 0.200 27.994 Atomic orbital electron populations 1.69680 1.06926 1.29632 1.49300 1.26131 0.96604 1.02585 0.95724 0.84789 0.78047 0.76578 0.78416 1.19607 1.19459 1.19451 1.19762 0.92945 0.83375 1.50508 0.89772 1.41738 1.09566 1.04159 1.64118 1.20099 0.88083 0.85369 0.84030 1.90526 1.15428 1.87701 1.56660 1.22527 0.90126 0.82303 1.05472 1.86580 1.40418 1.14725 1.83865 1.21249 0.87221 0.83044 0.71941 1.90788 1.16647 1.86915 1.48396 1.19738 0.93968 0.91867 1.20914 1.21323 1.01915 0.89039 0.87203 1.21399 0.90871 1.01753 1.12047 1.18890 0.88999 0.86822 0.86387 1.44027 1.08266 1.02348 1.75786 1.22004 0.99082 0.77366 1.05858 1.23578 1.04098 1.02691 0.92688 1.23488 1.00972 0.99465 0.97432 1.67343 1.39944 0.98287 1.23428 1.22899 0.88583 0.97453 0.85514 0.90989 0.76539 0.87455 0.87469 0.82206 0.80629 0.75276 0.83220 0.89016 0.86417 0.85981 0.88342 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 3 Si 1.00 42.54 29.55 68.60 2.03 44.57 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16 8 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -29.06 5.29 -306.98 -1.62 -30.68 16 10 C 0.44 21.79 7.86 87.66 0.69 22.47 16 11 O -0.62 -35.60 16.08 15.73 0.25 -35.34 16 12 C 0.07 2.83 5.95 71.23 0.42 3.26 16 13 O -0.34 -13.20 9.02 -50.28 -0.45 -13.66 16 14 C 0.52 17.51 7.89 70.24 0.55 18.06 16 15 O -0.54 -19.13 16.20 19.79 0.32 -18.81 16 16 C -0.26 -7.18 5.89 -20.00 -0.12 -7.30 16 17 C 0.03 0.63 9.65 22.47 0.22 0.85 16 18 C -0.24 -3.87 9.28 22.22 0.21 -3.66 16 19 C 0.43 8.36 7.63 133.26 1.02 9.38 16 20 N -0.68 -9.12 5.73 -324.63 -1.86 -10.98 16 21 C 0.06 0.47 6.27 44.99 0.28 0.75 16 22 C -0.19 -1.13 10.46 30.62 0.32 -0.81 16 23 C -0.18 -0.85 10.45 30.62 0.32 -0.53 16 24 N -0.57 -14.63 10.38 -192.29 -2.00 -16.63 16 25 C 0.22 6.05 10.79 85.05 0.92 6.97 16 26 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.40 19.59 7.90 -92.72 -0.73 18.86 16 28 H 0.11 3.74 8.14 -2.38 -0.02 3.72 16 29 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.16 2.89 7.73 -2.91 -0.02 2.86 16 31 H 0.18 1.49 5.85 -2.91 -0.02 1.48 16 32 H 0.41 5.29 8.93 -92.71 -0.83 4.46 16 33 H 0.15 0.65 5.89 -2.39 -0.01 0.64 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.17 4.94 7.61 -2.91 -0.02 4.91 16 Total: -1.00 -72.64 342.14 2.64 -70.00 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.42 Total: 29.20 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 6.11 Total: 31.06 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -5.20 Total: -107.02 kcal Atomic # 8 Polarization: -67.93 SS G_CDS: 0.12 Total: -67.81 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -72.64 2.64 -70.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.510 kcal (2) G-P(sol) polarization free energy of solvation -72.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds