Wall clock time and date at job start Fri Apr 10 2020 14:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86792 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47534 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47254 * 119.99878 * 3 2 1 6 6 H 1.48506 * 109.47232 * 239.99938 * 3 2 1 7 7 C 1.40025 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00182 * 4.81663 * 7 2 1 9 9 C 1.41337 * 120.00043 * 184.82023 * 7 2 1 10 10 C 1.40613 * 119.79172 * 184.86573 * 9 7 2 11 11 C 1.38306 * 119.12721 * 179.77031 * 10 9 7 12 12 C 1.38693 * 118.67161 * 0.49475 * 11 10 9 13 13 C 1.39630 * 119.49665 * 359.75032 * 12 11 10 14 14 N 1.39272 * 119.57784 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99577 * 339.10904 * 14 13 12 16 16 O 1.21277 * 120.00237 * 3.71062 * 15 14 13 17 17 C 1.50702 * 119.99607 * 183.71572 * 15 14 13 18 18 N 1.46502 * 109.46784 * 179.97438 * 17 15 14 19 19 C 1.46093 * 118.73261 * 269.73351 * 18 17 15 20 20 C 1.53210 * 109.82580 * 161.46988 * 19 18 17 21 21 O 1.43239 * 108.51441 * 49.53589 * 20 19 18 22 22 C 1.42965 * 112.99140 * 291.45990 * 21 20 19 23 23 C 1.33874 * 118.72673 * 90.00079 * 18 17 15 24 24 O 1.21278 * 118.83885 * 1.88194 * 23 18 17 25 25 N 1.31937 * 120.85125 * 359.97438 * 13 12 11 26 26 H 0.97004 * 120.00209 * 174.98691 * 1 2 3 27 27 H 1.07999 * 120.43114 * 359.97438 * 10 9 7 28 28 H 1.08008 * 120.66293 * 180.22485 * 11 10 9 29 29 H 1.08000 * 120.25480 * 179.76826 * 12 11 10 30 30 H 0.97000 * 119.99987 * 159.10355 * 14 13 12 31 31 H 1.09001 * 109.47153 * 299.99368 * 17 15 14 32 32 H 1.08995 * 109.47052 * 60.00118 * 17 15 14 33 33 H 1.08999 * 109.39662 * 281.78343 * 19 18 17 34 34 H 1.09002 * 109.39069 * 41.50184 * 19 18 17 35 35 H 1.09008 * 109.82513 * 289.74526 * 20 19 18 36 36 H 1.08999 * 109.67091 * 169.24436 * 20 19 18 37 37 H 1.08998 * 109.41776 * 289.49552 * 22 21 20 38 38 H 1.09000 * 109.36008 * 169.66628 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2765 2.7465 -0.0006 5 1 3.0951 1.6964 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 1.4704 -2.1463 -0.0795 9 6 3.4171 -1.2150 0.1023 10 6 4.1233 -2.4265 -0.0016 11 6 5.5028 -2.4122 0.0963 12 6 6.1426 -1.1994 0.3047 13 6 5.3850 -0.0307 0.4046 14 7 6.0257 1.1879 0.6145 15 6 7.2703 1.2147 1.1310 16 8 7.8584 0.1770 1.3502 17 6 7.9311 2.5343 1.4362 18 7 9.2681 2.2954 1.9854 19 6 9.4190 2.1589 3.4320 20 6 10.7515 1.4743 3.7532 21 8 11.7912 2.1389 3.0258 22 6 11.7045 1.9326 1.6138 23 6 10.3052 2.2159 1.1425 24 8 10.1091 2.3785 -0.0432 25 7 4.0701 -0.0660 0.3028 26 1 -0.4851 -0.8368 -0.0734 27 1 3.5955 -3.3555 -0.1591 28 1 6.0702 -3.3278 0.0164 29 1 7.2185 -1.1592 0.3888 30 1 5.5762 2.0174 0.3888 31 1 8.0134 3.1198 0.5205 32 1 7.3319 3.0808 2.1644 33 1 9.3950 3.1462 3.8932 34 1 8.6003 1.5568 3.8261 35 1 10.7098 0.4263 3.4562 36 1 10.9513 1.5436 4.8225 37 1 11.9627 0.8993 1.3820 38 1 12.3999 2.6021 1.1075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:18 Heat of formation + Delta-G solvation = -67.346575 kcal Electronic energy + Delta-G solvation = -24855.236518 eV Core-core repulsion = 21084.249134 eV Total energy + Delta-G solvation = -3770.987384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.12663 -39.94002 -38.22985 -37.86172 -35.61295 -34.60368 -33.55900 -31.15460 -30.85492 -30.05610 -28.90415 -26.42166 -25.30440 -24.22124 -22.40686 -21.80053 -20.10112 -19.37886 -18.46545 -18.01064 -17.75235 -17.20912 -16.56791 -16.13681 -15.77641 -15.25419 -15.07575 -14.97928 -14.51525 -14.34365 -13.86895 -13.68636 -13.59245 -13.37788 -13.00649 -12.87079 -12.30963 -12.14361 -12.07253 -11.92239 -11.64715 -11.27297 -10.88131 -10.84208 -10.37196 -10.06894 -9.79052 -9.71802 -9.53394 -9.22758 -8.87711 -8.59482 -7.79209 -7.53575 -7.26341 -4.82208 2.11101 2.19118 2.44982 2.60013 2.95969 3.25423 3.40361 3.49606 3.59884 3.93160 3.99763 4.34837 4.38799 4.57408 4.63838 4.71832 4.78138 4.87358 5.02617 5.08255 5.17255 5.24105 5.37298 5.47396 5.79105 5.85399 6.02241 6.38408 6.40865 6.47499 6.52329 7.01159 7.07591 7.13541 7.39297 7.50140 7.57438 7.71296 7.76532 8.06558 8.22551 8.36880 8.60569 9.35234 9.95796 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025297 B = 0.003711 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.579319 B = 7542.455733 C = 8037.179936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.043 3.957 3 Si 1.154 2.846 4 H -0.332 1.332 5 H -0.280 1.280 6 H -0.294 1.294 7 C -0.476 4.476 8 H 0.083 0.917 9 C 0.273 3.727 10 C -0.275 4.275 11 C -0.036 4.036 12 C -0.313 4.313 13 C 0.384 3.616 14 N -0.651 5.651 15 C 0.501 3.499 16 O -0.508 6.508 17 C 0.091 3.909 18 N -0.586 5.586 19 C 0.082 3.918 20 C 0.044 3.956 21 O -0.372 6.372 22 C 0.053 3.947 23 C 0.494 3.506 24 O -0.537 6.537 25 N -0.598 5.598 26 H 0.283 0.717 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.144 0.856 30 H 0.408 0.592 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.935 6.663 7.363 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.178 4.178 3 Si 0.990 3.010 4 H -0.265 1.265 5 H -0.208 1.208 6 H -0.222 1.222 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.149 3.851 10 C -0.297 4.297 11 C -0.060 4.060 12 C -0.337 4.337 13 C 0.154 3.846 14 N -0.296 5.296 15 C 0.286 3.714 16 O -0.383 6.383 17 C -0.036 4.036 18 N -0.320 5.320 19 C -0.041 4.041 20 C -0.033 4.033 21 O -0.290 6.290 22 C -0.026 4.026 23 C 0.281 3.719 24 O -0.413 6.413 25 N -0.324 5.324 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.161 0.839 30 H 0.243 0.757 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.683 8.394 7.154 20.840 hybrid contribution -0.209 -2.575 -0.314 2.603 sum 17.473 5.818 6.840 19.646 Atomic orbital electron populations 1.70646 1.08170 1.32839 1.31034 1.27787 0.95331 1.06196 0.88527 0.81861 0.70773 0.69634 0.78781 1.26537 1.20792 1.22238 1.20734 0.90343 0.96389 1.43330 0.89845 1.18273 0.93440 0.85913 0.87503 1.21620 0.93992 0.98367 1.15762 1.20956 0.94156 0.96532 0.94385 1.21721 1.01293 0.91504 1.19227 1.18110 0.88616 0.84236 0.93625 1.43217 1.15867 1.08797 1.61745 1.21043 0.81080 0.92090 0.77194 1.90576 1.63067 1.33609 1.51002 1.21364 0.84004 0.94999 1.03186 1.47028 1.06241 1.71459 1.07234 1.22253 0.99835 1.02178 0.79850 1.23057 0.85562 0.96464 0.98226 1.88170 1.50394 1.73458 1.16994 1.22820 0.93203 1.04308 0.82292 1.21011 0.87959 0.76401 0.86487 1.90763 1.85141 1.49335 1.16111 1.66004 1.06709 1.29800 1.29893 0.90549 0.87660 0.87634 0.83911 0.75717 0.86076 0.86743 0.90249 0.89207 0.91215 0.86532 0.88888 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.79 13.65 55.55 0.76 -21.03 16 2 C 0.04 1.15 5.52 -17.34 -0.10 1.06 16 3 Si 1.15 27.45 25.61 -169.99 -4.35 23.09 16 4 H -0.33 -7.80 7.11 56.52 0.40 -7.40 16 5 H -0.28 -6.45 6.60 56.52 0.37 -6.08 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.48 -12.94 9.57 -37.73 -0.36 -13.30 16 8 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16 9 C 0.27 7.17 6.40 -85.00 -0.54 6.63 16 10 C -0.28 -6.59 9.83 -38.66 -0.38 -6.97 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.31 -7.12 8.90 -38.89 -0.35 -7.46 16 13 C 0.38 8.81 7.51 -154.96 -1.16 7.65 16 14 N -0.65 -11.90 5.41 -11.40 -0.06 -11.96 16 15 C 0.50 8.17 7.79 -10.99 -0.09 8.08 16 16 O -0.51 -9.71 13.09 5.56 0.07 -9.64 16 17 C 0.09 1.05 5.80 -5.19 -0.03 1.02 16 18 N -0.59 -6.63 2.32 -175.66 -0.41 -7.04 16 19 C 0.08 0.66 6.63 -4.15 -0.03 0.63 16 20 C 0.04 0.32 6.91 37.27 0.26 0.58 16 21 O -0.37 -3.31 10.85 -35.23 -0.38 -3.69 16 22 C 0.05 0.49 6.98 35.84 0.25 0.74 16 23 C 0.49 6.27 7.58 -11.56 -0.09 6.18 16 24 O -0.54 -8.75 16.36 5.56 0.09 -8.66 16 25 N -0.60 -15.08 4.54 -10.25 -0.05 -15.13 16 26 H 0.28 7.34 8.72 -40.82 -0.36 6.98 16 27 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 28 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 29 H 0.14 3.22 5.17 -52.92 -0.27 2.95 16 30 H 0.41 6.41 8.82 -40.82 -0.36 6.05 16 31 H 0.12 1.36 7.24 -51.93 -0.38 0.99 16 32 H 0.11 0.91 8.03 -51.93 -0.42 0.49 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.07 0.56 8.10 -51.92 -0.42 0.13 16 36 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -34.40 323.16 -6.88 -41.29 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.41 Total: 4.28 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -3.01 Total: 3.62 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.24 Total: -55.16 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.22 Total: -21.99 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.35 Total: 23.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.40 -6.88 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.061 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds