Wall clock time and date at job start Fri Apr 10 2020 14:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86792 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47534 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47254 * 119.99878 * 3 2 1 6 6 H 1.48506 * 109.47232 * 239.99938 * 3 2 1 7 7 C 1.40025 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00182 * 4.81663 * 7 2 1 9 9 C 1.41337 * 120.00043 * 184.82023 * 7 2 1 10 10 C 1.40613 * 119.79172 * 184.86573 * 9 7 2 11 11 C 1.38306 * 119.12721 * 179.77031 * 10 9 7 12 12 C 1.38693 * 118.67161 * 0.49475 * 11 10 9 13 13 C 1.39630 * 119.49665 * 359.75032 * 12 11 10 14 14 N 1.39272 * 119.57784 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99577 * 339.10904 * 14 13 12 16 16 O 1.21277 * 120.00237 * 3.71062 * 15 14 13 17 17 C 1.50702 * 119.99607 * 183.71572 * 15 14 13 18 18 N 1.46502 * 109.46784 * 179.97438 * 17 15 14 19 19 C 1.46093 * 118.73261 * 269.73351 * 18 17 15 20 20 C 1.53210 * 109.82580 * 161.46988 * 19 18 17 21 21 O 1.43239 * 108.51441 * 49.53589 * 20 19 18 22 22 C 1.42965 * 112.99140 * 291.45990 * 21 20 19 23 23 C 1.33874 * 118.72673 * 90.00079 * 18 17 15 24 24 O 1.21278 * 118.83885 * 1.88194 * 23 18 17 25 25 N 1.31937 * 120.85125 * 359.97438 * 13 12 11 26 26 H 0.97004 * 120.00209 * 174.98691 * 1 2 3 27 27 H 1.07999 * 120.43114 * 359.97438 * 10 9 7 28 28 H 1.08008 * 120.66293 * 180.22485 * 11 10 9 29 29 H 1.08000 * 120.25480 * 179.76826 * 12 11 10 30 30 H 0.97000 * 119.99987 * 159.10355 * 14 13 12 31 31 H 1.09001 * 109.47153 * 299.99368 * 17 15 14 32 32 H 1.08995 * 109.47052 * 60.00118 * 17 15 14 33 33 H 1.08999 * 109.39662 * 281.78343 * 19 18 17 34 34 H 1.09002 * 109.39069 * 41.50184 * 19 18 17 35 35 H 1.09008 * 109.82513 * 289.74526 * 20 19 18 36 36 H 1.08999 * 109.67091 * 169.24436 * 20 19 18 37 37 H 1.08998 * 109.41776 * 289.49552 * 22 21 20 38 38 H 1.09000 * 109.36008 * 169.66628 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2765 2.7465 -0.0006 5 1 3.0951 1.6964 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 1.4704 -2.1463 -0.0795 9 6 3.4171 -1.2150 0.1023 10 6 4.1233 -2.4265 -0.0016 11 6 5.5028 -2.4122 0.0963 12 6 6.1426 -1.1994 0.3047 13 6 5.3850 -0.0307 0.4046 14 7 6.0257 1.1879 0.6145 15 6 7.2703 1.2147 1.1310 16 8 7.8584 0.1770 1.3502 17 6 7.9311 2.5343 1.4362 18 7 9.2681 2.2954 1.9854 19 6 9.4190 2.1589 3.4320 20 6 10.7515 1.4743 3.7532 21 8 11.7912 2.1389 3.0258 22 6 11.7045 1.9326 1.6138 23 6 10.3052 2.2159 1.1425 24 8 10.1091 2.3785 -0.0432 25 7 4.0701 -0.0660 0.3028 26 1 -0.4851 -0.8368 -0.0734 27 1 3.5955 -3.3555 -0.1591 28 1 6.0702 -3.3278 0.0164 29 1 7.2185 -1.1592 0.3888 30 1 5.5762 2.0174 0.3888 31 1 8.0134 3.1198 0.5205 32 1 7.3319 3.0808 2.1644 33 1 9.3950 3.1462 3.8932 34 1 8.6003 1.5568 3.8261 35 1 10.7098 0.4263 3.4562 36 1 10.9513 1.5436 4.8225 37 1 11.9627 0.8993 1.3820 38 1 12.3999 2.6021 1.1075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:16 Heat of formation + Delta-G solvation = -91.923100 kcal Electronic energy + Delta-G solvation = -24856.302236 eV Core-core repulsion = 21084.249134 eV Total energy + Delta-G solvation = -3772.053102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.16425 -41.30711 -39.83051 -38.73630 -36.61586 -36.15736 -35.41412 -33.02784 -31.98484 -31.17596 -30.07145 -27.57021 -26.96861 -24.97203 -23.95132 -23.57714 -21.65514 -20.43393 -20.17215 -19.13268 -18.77478 -18.37602 -17.80280 -17.10937 -16.95988 -16.83034 -16.39780 -16.08844 -15.84272 -15.52518 -15.32980 -15.00956 -14.77391 -14.61675 -14.42262 -14.25832 -14.03603 -13.76955 -13.20557 -12.96377 -12.78677 -12.72990 -12.31253 -12.23237 -11.76276 -11.68242 -11.59515 -11.15855 -10.94165 -10.56195 -10.46088 -9.92193 -9.72219 -9.39952 -9.21392 -6.85595 0.45695 0.69341 1.19505 1.47073 1.55459 1.59904 1.72598 1.96162 2.11183 2.45212 2.64164 2.75962 3.26043 3.44997 3.53003 3.76848 3.99873 4.05806 4.12128 4.21037 4.29202 4.36514 4.40456 4.49065 4.59773 4.64749 4.71902 4.76063 4.81522 5.04136 5.31323 5.34834 5.38708 5.68534 5.73478 5.77728 5.89647 6.18234 6.24040 6.37038 6.61442 6.84580 6.96729 7.45173 7.92445 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025297 B = 0.003711 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.579319 B = 7542.455733 C = 8037.179936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.013 3.987 3 Si 1.185 2.815 4 H -0.328 1.328 5 H -0.269 1.269 6 H -0.295 1.295 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.258 3.742 10 C -0.292 4.292 11 C -0.029 4.029 12 C -0.312 4.312 13 C 0.376 3.624 14 N -0.650 5.650 15 C 0.501 3.499 16 O -0.537 6.537 17 C 0.097 3.903 18 N -0.588 5.588 19 C 0.076 3.924 20 C 0.041 3.959 21 O -0.375 6.375 22 C 0.058 3.942 23 C 0.484 3.516 24 O -0.582 6.582 25 N -0.609 5.609 26 H 0.281 0.719 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.420 0.580 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.100 0.900 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.395 7.891 8.754 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.203 4.203 3 Si 1.017 2.983 4 H -0.261 1.261 5 H -0.196 1.196 6 H -0.223 1.223 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.133 3.867 10 C -0.314 4.314 11 C -0.053 4.053 12 C -0.337 4.337 13 C 0.145 3.855 14 N -0.296 5.296 15 C 0.288 3.712 16 O -0.413 6.413 17 C -0.029 4.029 18 N -0.320 5.320 19 C -0.046 4.046 20 C -0.035 4.035 21 O -0.293 6.293 22 C -0.021 4.021 23 C 0.273 3.727 24 O -0.462 6.462 25 N -0.335 5.335 26 H 0.091 0.909 27 H 0.133 0.867 28 H 0.159 0.841 29 H 0.167 0.833 30 H 0.257 0.743 31 H 0.144 0.856 32 H 0.176 0.824 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.165 0.835 37 H 0.118 0.882 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 20.161 9.635 8.591 23.940 hybrid contribution -0.767 -3.039 -0.693 3.209 sum 19.395 6.596 7.898 21.956 Atomic orbital electron populations 1.70673 1.08486 1.32718 1.33193 1.28643 0.95591 1.08102 0.87976 0.81487 0.70172 0.67590 0.79046 1.26147 1.19610 1.22278 1.20735 0.91235 0.96083 1.45960 0.91400 1.18450 0.93410 0.87280 0.87573 1.21775 0.94957 0.98108 1.16544 1.21343 0.93593 0.97893 0.92453 1.22041 1.01715 0.91888 1.18018 1.18471 0.88119 0.86257 0.92674 1.43328 1.16527 1.07796 1.61997 1.22015 0.79980 0.93621 0.75554 1.90541 1.63454 1.35285 1.51975 1.21497 0.84434 0.92107 1.04906 1.47267 1.05739 1.70430 1.08553 1.22532 1.00252 1.03872 0.77907 1.23241 0.84914 0.95629 0.99716 1.88178 1.50863 1.73678 1.16593 1.22843 0.91437 1.05087 0.82765 1.21682 0.89424 0.75494 0.86071 1.90736 1.85985 1.51511 1.17986 1.66027 1.07825 1.29551 1.30118 0.90859 0.86750 0.84078 0.83317 0.74256 0.85597 0.82411 0.87556 0.89107 0.92257 0.83458 0.88200 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.82 13.65 21.84 0.30 -45.53 16 2 C 0.01 0.73 5.52 85.29 0.47 1.20 16 3 Si 1.19 55.27 25.61 68.60 1.76 57.02 16 4 H -0.33 -14.94 7.11 99.48 0.71 -14.23 16 5 H -0.27 -11.90 6.60 99.48 0.66 -11.24 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.51 -28.31 9.57 23.47 0.22 -28.09 16 8 H 0.07 3.85 8.05 -2.91 -0.02 3.83 16 9 C 0.26 13.59 6.40 40.21 0.26 13.84 16 10 C -0.29 -13.80 9.83 22.87 0.22 -13.58 16 11 C -0.03 -1.21 10.15 22.39 0.23 -0.98 16 12 C -0.31 -13.64 8.90 22.71 0.20 -13.44 16 13 C 0.38 16.64 7.51 133.23 1.00 17.64 16 14 N -0.65 -22.35 5.41 -308.37 -1.67 -24.02 16 15 C 0.50 15.15 7.79 87.66 0.68 15.84 16 16 O -0.54 -19.47 13.09 -3.02 -0.04 -19.51 16 17 C 0.10 1.93 5.80 85.63 0.50 2.43 16 18 N -0.59 -11.65 2.32 -828.58 -1.92 -13.58 16 19 C 0.08 0.96 6.63 86.53 0.57 1.53 16 20 C 0.04 0.47 6.91 72.05 0.50 0.97 16 21 O -0.38 -5.59 10.85 -148.98 -1.62 -7.20 16 22 C 0.06 0.95 6.98 71.13 0.50 1.44 16 23 C 0.48 11.40 7.58 87.69 0.66 12.06 16 24 O -0.58 -18.39 16.36 -3.02 -0.05 -18.44 16 25 N -0.61 -30.17 4.54 -186.35 -0.85 -31.02 16 26 H 0.28 15.08 8.72 -92.71 -0.81 14.27 16 27 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 28 H 0.14 4.89 8.06 -2.91 -0.02 4.86 16 29 H 0.15 6.41 5.17 -9.74 -0.05 6.36 16 30 H 0.42 12.19 8.82 -92.71 -0.82 11.38 16 31 H 0.13 2.51 7.24 -2.39 -0.02 2.49 16 32 H 0.16 1.79 8.03 -2.39 -0.02 1.77 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.16 8.13 -2.39 -0.02 1.15 16 35 H 0.06 0.81 8.10 -2.38 -0.02 0.79 16 36 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -75.03 323.16 2.10 -72.93 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.17 Total: 18.46 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.02 Total: 10.87 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.14 Total: -114.13 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.71 Total: -45.16 kcal Atomic # 14 Polarization: 55.27 SS G_CDS: 1.76 Total: 57.02 kcal Total: -75.03 2.10 -72.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.994 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds