Wall clock time and date at job start Fri Apr 10 2020 14:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00310 * 2 1 4 4 H 1.48500 * 109.47196 * 273.70433 * 3 2 1 5 5 H 1.48505 * 109.46780 * 33.70074 * 3 2 1 6 6 H 1.48495 * 109.47491 * 153.69786 * 3 2 1 7 7 C 1.38904 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99479 * 342.00827 * 7 2 1 9 9 N 1.37207 * 119.99809 * 162.00712 * 7 2 1 10 10 C 1.34783 * 119.99612 * 125.84084 * 9 7 2 11 11 O 1.21271 * 119.99951 * 184.35218 * 10 9 7 12 12 C 1.50696 * 119.99978 * 4.34907 * 10 9 7 13 13 N 1.46506 * 109.46968 * 183.58369 * 12 10 9 14 14 C 1.46090 * 118.73015 * 264.65780 * 13 12 10 15 15 C 1.53203 * 109.82775 * 161.46667 * 14 13 12 16 16 O 1.43246 * 108.51266 * 49.53657 * 15 14 13 17 17 C 1.42976 * 112.98668 * 291.46203 * 16 15 14 18 18 C 1.33868 * 118.72667 * 84.92192 * 13 12 10 19 19 O 1.21280 * 118.83345 * 1.88283 * 18 13 12 20 20 C 1.39422 * 120.00171 * 305.83960 * 9 7 2 21 21 C 1.39066 * 119.69833 * 5.00184 * 20 9 7 22 22 C 1.38377 * 119.09789 * 180.02562 * 21 20 9 23 23 C 1.38825 * 118.49578 * 0.02562 * 22 21 20 24 24 C 1.38149 * 119.31086 * 0.24609 * 23 22 21 25 25 N 1.31886 * 120.84637 * 359.48056 * 24 23 22 26 26 H 0.96999 * 120.00030 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47351 * 303.58583 * 12 10 9 28 28 H 1.09002 * 109.46956 * 63.58732 * 12 10 9 29 29 H 1.08999 * 109.39246 * 281.78133 * 14 13 12 30 30 H 1.09000 * 109.40134 * 41.49683 * 14 13 12 31 31 H 1.09002 * 109.82856 * 289.74769 * 15 14 13 32 32 H 1.09000 * 109.67755 * 169.23846 * 15 14 13 33 33 H 1.08994 * 109.40963 * 289.49215 * 17 16 15 34 34 H 1.09002 * 109.35782 * 169.66675 * 17 16 15 35 35 H 1.07999 * 120.44895 * 0.04275 * 21 20 9 36 36 H 1.08005 * 120.75051 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.34559 * 179.97438 * 23 22 21 38 38 H 1.07995 * 119.57459 * 179.75239 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4174 2.0916 -1.3971 5 1 1.4869 2.6287 0.7769 6 1 3.5826 1.4188 0.6203 7 6 2.0086 -1.2030 -0.0005 8 1 1.5081 -2.1155 0.2880 9 7 3.3304 -1.2318 -0.3676 10 6 4.2471 -1.7754 0.4574 11 8 5.4243 -1.7306 0.1695 12 6 3.8093 -2.4389 1.7377 13 7 4.9887 -2.8701 2.4923 14 6 5.4517 -4.2478 2.3446 15 6 6.9028 -4.3624 2.8226 16 8 7.0060 -3.7504 4.1136 17 6 6.8362 -2.3313 4.0740 18 6 5.5971 -1.9880 3.2946 19 8 5.1322 -0.8726 3.3967 20 6 3.7251 -0.6989 -1.5940 21 6 2.7930 -0.0468 -2.3939 22 6 3.1981 0.4770 -3.6090 23 6 4.5267 0.3295 -3.9838 24 6 5.3972 -0.3350 -3.1418 25 7 4.9836 -0.8194 -1.9869 26 1 -0.4850 0.8400 0.0004 27 1 3.2342 -1.7316 2.3353 28 1 3.1902 -3.3053 1.5047 29 1 4.8185 -4.9080 2.9373 30 1 5.3938 -4.5388 1.2958 31 1 7.5641 -3.8524 2.1222 32 1 7.1843 -5.4131 2.8925 33 1 7.7031 -1.8760 3.5953 34 1 6.7418 -1.9501 5.0908 35 1 1.7669 0.0497 -2.0711 36 1 2.4965 0.9882 -4.2515 37 1 4.8751 0.7264 -4.9259 38 1 6.4307 -0.4557 -3.4309 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892471277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:24:08 Heat of formation + Delta-G solvation = -54.536418 kcal Electronic energy + Delta-G solvation = -25850.927026 eV Core-core repulsion = 22080.495132 eV Total energy + Delta-G solvation = -3770.431894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.12513 -41.46395 -39.75175 -38.71229 -37.13857 -36.30568 -34.34986 -33.18244 -31.78909 -31.11648 -29.92424 -27.42394 -27.01109 -24.98475 -24.34112 -23.72896 -21.40690 -20.49006 -19.82620 -18.76642 -18.43052 -17.92691 -17.77760 -17.12170 -17.01088 -16.61923 -16.36479 -16.15682 -15.95141 -15.57006 -15.29425 -15.05941 -14.83039 -14.65520 -14.47835 -14.12009 -13.96289 -13.87143 -13.38503 -13.09745 -12.96353 -12.78827 -12.41691 -12.27552 -12.22584 -11.61907 -11.51849 -11.19199 -10.96962 -10.57074 -10.50123 -10.14177 -9.70971 -9.03341 -8.67968 -6.54802 0.21572 0.45429 1.08712 1.17097 1.29908 1.31502 1.69425 1.80171 2.02547 2.34178 2.66201 2.75356 3.10352 3.29578 3.62848 3.78067 3.99495 4.04000 4.05202 4.15811 4.18601 4.27453 4.38120 4.39560 4.46312 4.52632 4.55251 4.71247 4.80332 4.94126 5.08461 5.16430 5.31974 5.42960 5.72386 5.79169 5.92730 6.16731 6.27756 6.70180 6.91553 6.93776 7.24245 7.66244 8.39038 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.005658 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.960348 B = 4947.984380 C = 5776.180096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.237 1.237 5 H -0.272 1.272 6 H -0.307 1.307 7 C -0.368 4.368 8 H 0.105 0.895 9 N -0.421 5.421 10 C 0.476 3.524 11 O -0.535 6.535 12 C 0.116 3.884 13 N -0.588 5.588 14 C 0.075 3.925 15 C 0.046 3.954 16 O -0.372 6.372 17 C 0.065 3.935 18 C 0.475 3.525 19 O -0.593 6.593 20 C 0.324 3.676 21 C -0.223 4.223 22 C -0.061 4.061 23 C -0.207 4.207 24 C 0.104 3.896 25 N -0.525 5.525 26 H 0.287 0.713 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.148 0.852 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.445 -6.803 -0.640 11.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.160 1.160 5 H -0.197 1.197 6 H -0.234 1.234 7 C -0.495 4.495 8 H 0.122 0.878 9 N -0.137 5.137 10 C 0.265 3.735 11 O -0.411 6.411 12 C -0.010 4.010 13 N -0.320 5.320 14 C -0.046 4.046 15 C -0.030 4.030 16 O -0.290 6.290 17 C -0.014 4.014 18 C 0.264 3.736 19 O -0.475 6.475 20 C 0.096 3.904 21 C -0.246 4.246 22 C -0.086 4.086 23 C -0.228 4.228 24 C -0.055 4.055 25 N -0.241 5.241 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.151 0.849 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.119 0.881 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.222 -6.737 0.117 12.243 hybrid contribution -0.861 1.653 -0.676 1.983 sum 9.361 -5.084 -0.559 10.667 Atomic orbital electron populations 1.69729 1.06420 1.29594 1.44224 1.25610 0.95280 0.99580 0.92906 0.86790 0.78542 0.82653 0.80292 1.16043 1.19710 1.23385 1.18907 0.83420 0.96401 1.50776 0.87753 1.41637 1.08406 1.51900 1.11721 1.21945 0.85532 0.80018 0.85958 1.90591 1.17621 1.58227 1.74700 1.21086 0.88191 1.01757 0.89968 1.47375 1.29346 1.13167 1.42108 1.22541 0.97920 0.80444 1.03717 1.23245 0.93491 1.02048 0.84223 1.88149 1.92622 1.18238 1.29965 1.22783 0.92498 0.83341 1.02768 1.21880 0.87149 0.84400 0.80126 1.90741 1.66091 1.23257 1.67377 1.19451 0.89755 0.93499 0.87681 1.21973 1.01461 1.03643 0.97556 1.21786 0.97336 0.95425 0.94086 1.22315 0.93664 1.03769 1.03075 1.23198 1.01292 0.92833 0.88140 1.67638 1.15271 1.22878 1.18327 0.90205 0.88739 0.84904 0.87960 0.89371 0.92225 0.82707 0.88130 0.83470 0.84727 0.82008 0.80848 0.80370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.75 13.96 21.65 0.30 -45.45 16 2 C 0.08 3.98 3.74 84.92 0.32 4.29 16 3 Si 0.89 44.75 24.90 68.60 1.71 46.45 16 4 H -0.24 -10.95 6.16 99.48 0.61 -10.34 16 5 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.31 -17.87 7.11 99.48 0.71 -17.16 16 7 C -0.37 -19.28 8.06 84.01 0.68 -18.60 16 8 H 0.11 5.48 7.96 -2.91 -0.02 5.46 16 9 N -0.42 -21.78 2.10 -464.37 -0.97 -22.75 16 10 C 0.48 23.58 7.60 87.65 0.67 24.24 16 11 O -0.54 -28.10 14.64 -3.00 -0.04 -28.14 16 12 C 0.12 4.75 4.58 85.63 0.39 5.14 16 13 N -0.59 -20.45 2.37 -828.61 -1.96 -22.41 16 14 C 0.08 1.76 6.61 86.52 0.57 2.34 16 15 C 0.05 0.88 6.91 72.05 0.50 1.38 16 16 O -0.37 -8.39 10.85 -148.98 -1.62 -10.01 16 17 C 0.07 1.69 6.98 71.12 0.50 2.19 16 18 C 0.48 17.73 7.43 87.69 0.65 18.39 16 19 O -0.59 -28.39 16.44 -3.03 -0.05 -28.44 16 20 C 0.32 16.18 6.07 132.91 0.81 16.99 16 21 C -0.22 -10.04 6.10 22.50 0.14 -9.90 16 22 C -0.06 -2.11 10.17 22.44 0.23 -1.88 16 23 C -0.21 -6.31 10.11 22.39 0.23 -6.09 16 24 C 0.10 3.75 11.18 84.66 0.95 4.69 16 25 N -0.52 -24.89 7.92 -192.96 -1.53 -26.42 16 26 H 0.29 14.13 8.31 -92.71 -0.77 13.36 16 27 H 0.09 4.34 7.19 -2.39 -0.02 4.33 16 28 H 0.13 4.54 7.98 -2.39 -0.02 4.53 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 2.06 8.13 -2.39 -0.02 2.04 16 31 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.14 6.50 4.81 -2.91 -0.01 6.48 16 36 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 38 H 0.18 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -77.96 318.27 3.44 -74.51 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 1.00 Total: 19.47 kcal Atomic # 6 Polarization: 36.56 SS G_CDS: 6.61 Total: 43.18 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -4.16 Total: -117.03 kcal Atomic # 8 Polarization: -64.88 SS G_CDS: -1.71 Total: -66.59 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.71 Total: 46.45 kcal Total: -77.96 3.44 -74.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892471277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.976 kcal (2) G-P(sol) polarization free energy of solvation -77.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds